>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8|
           (Vegetative cell protein X) (M4 protein)
          Length = 263

 Score =  101 bits (252), Expect = 1e-21
 Identities = 59/142 (41%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
 Frame = +1

Query: 118 KAACKRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVE-ELKLAREIYEHAVLLSVK 294
           K     SD      +L QLK+  T     P       + V+ +L LAREI E   L S+K
Sbjct: 15  KLVAGNSDKAQITPVLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLAREILELISLYSIK 74

Query: 295 MEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPA 474
           ++D D+FER F QLK YY D   I+ PS++EY I+GLNL+RLL +++ +EFH+E+EL+  
Sbjct: 75  IKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHKTSEFHSEIELIEF 134

Query: 475 KALENACIKHGVELEQSFMEGA 540
             L+N+ IK  + +E+S  EG+
Sbjct: 135 NNLDNSFIKFPLLVEKSITEGS 156

>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8|
          Length = 257

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
 Frame = +1

Query: 103 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 276
           ++E+ K    R   +L      L +LK++L +   LP     T    ++L LAR+I E  
Sbjct: 1   MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58

Query: 277 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 456
              S+  +D  +FER   QLK YY D    LP S+  + ++GLNLL LL QNR+AEFHTE
Sbjct: 59  AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118

Query: 457 LELLPAKALE-NACIKHGVELEQSFMEGA 540
           LE LPAK ++ N  IKH V LEQ  MEG+
Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGS 147

>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S|
           proteasome regulatory subunit S14) (p31)
          Length = 257

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
 Frame = +1

Query: 103 LFERFKAACKRS--DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHA 276
           ++E+ K    R   +L      L +LK++L +   LP     T    ++L LAR+I E  
Sbjct: 1   MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58

Query: 277 VLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTE 456
              S+  +D  +FER   QLK YY D    LP S+  + ++GLNLL LL QNR+AEFHTE
Sbjct: 59  AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118

Query: 457 LELLPAKALE-NACIKHGVELEQSFMEGA 540
           LE LPAK ++ N  IKH V LEQ  MEG+
Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGS 147

>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S|
           proteasome regulatory subunit S14)
          Length = 257

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
 Frame = +1

Query: 130 KRSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQD 309
           K  +L      L +LK++L +   LP     T    ++L LAR+I E     S+  +D  
Sbjct: 12  KNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIGAQWSILCKDIP 69

Query: 310 AFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKALE- 486
           +FER   QLK YY D    LP S+  + ++GLNLL LL QNR+AEFHTELE LPAK ++ 
Sbjct: 70  SFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQT 129

Query: 487 NACIKHGVELEQSFMEGA 540
           N  IKH V LEQ  MEG+
Sbjct: 130 NVYIKHPVSLEQYLMEGS 147

>RPN12_SCHPO (P50524) 26S proteasome regulatory subunit rpn12|
          Length = 270

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
 Frame = +1

Query: 133 RSDLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDA 312
           R D +A    L +LKV L K      LF  T +  E+   AR ++E+ VL+S++  D ++
Sbjct: 15  RKDWNACKKELLKLKVELAK----QNLFVPTSDK-EKASFARNVFEYGVLVSIQTCDIES 69

Query: 313 FERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELELLPAKAL--E 486
           F R   Q+ P+Y D+   L PSS    + GLNLL LL +NRIAEFHT LE +P K+L   
Sbjct: 70  FARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFER 126

Query: 487 NACIKHGVELEQSFMEGA 540
           +  ++  + LEQ+ MEGA
Sbjct: 127 DPYVEWVISLEQNVMEGA 144

>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity|
           protein 1)
          Length = 274

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
 Frame = +1

Query: 79  PKLVEVTQLFERFKAACKRSDLDASATLLSQLKVLLTKFPSL-PPLFQQTPNAVEELKLA 255
           P L E+T+       A +  D  A   LL  +K+ L K   L P L  Q    + +L + 
Sbjct: 2   PSLAELTK---SLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMIT 58

Query: 256 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNR 435
           + I E   L S++  + D+FE  F QLKPYY      L  S  +  ++ L LL LL QN 
Sbjct: 59  KRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNN 118

Query: 436 IAEFHTELELLP--AKALE-NACIKHGVELEQSFMEGA 540
             +FH+EL+ L    K LE ++ + + ++L++  MEG+
Sbjct: 119 TTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS 156

>PSD8_CAEEL (Q23449) 26S proteasome non-ATPase regulatory subunit 8 (26S|
           proteasome regulatory subunit rpn-12)
          Length = 250

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
 Frame = +1

Query: 139 DLDASATLLSQLKVLLTKFPSLPPLFQQTPNAVEELKLAREIYEHAVLLSVKMEDQDAFE 318
           DL A    L++L  +L+    L        N  +    ++++YE +VLL++   D + F+
Sbjct: 18  DLVAVEKALNELTKVLSASSDL--------NDKQSALASKDLYEISVLLAILKHDFETFD 69

Query: 319 RDFCQLKPYYMDTCGILPPSSMEYPIM-GLNLLRLLVQNRIAEFHTELELLPAK-ALENA 492
               Q+  YY     + P +S    +M GL+L+ LL  NR+++FH  LE +P K    NA
Sbjct: 70  DYINQMHTYYT----MAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNA 125

Query: 493 CIKHGVELEQSFMEGA 540
            I   V +EQS MEGA
Sbjct: 126 YISTPVRIEQSLMEGA 141

>DSC2_BOVIN (P33545) Desmocollin-2 precursor (Epithelial type 2 desmocollin)|
           (Fragment)
          Length = 863

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 136 SDLDASATLLSQLKV-LLTKFPSLPPLFQQTPN----AVEELKLAREIYEHAVLLSVKME 300
           +D D   TL ++LK  ++ +FP+LP LF   P          KL RE+ +    L +K++
Sbjct: 222 TDQDEPDTLHTRLKYSIIEQFPALPTLFSMHPTTGVITTSSSKLDRELID-KYQLKIKVQ 280

Query: 301 DQD 309
           D D
Sbjct: 281 DMD 283

>RDR1_SCHPO (O14227) RNA-dependent RNA polymerase homolog 1 (Protein rdp1)|
          Length = 1215

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +1

Query: 283 LSVKMEDQDAFERDFCQLKPYYMDTCGILPPSSMEYPIMGLNLLRLLVQNRIAEFHTELE 462
           LS+++++ D F   F      Y     + PP+ +EY   G  +     Q++   FH+ LE
Sbjct: 627 LSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYH-QGNLVFPRRSQDKFKSFHSTLE 685

Query: 463 LLPAKALENA 492
           ++      NA
Sbjct: 686 VIKISRFSNA 695

>ARHG1_RAT (Q9Z1I6) Rho guanine nucleotide exchange factor 1 (Lbc's second|
           cousin)
          Length = 919

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 256 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 378
           +E+ E+ + L V ++  +  E +FC+L+P+      IL P+
Sbjct: 866 QEVEENLLSLEVVIKQLEELEEEFCRLRPFLSQLGEILSPN 906

>GLT35_DROME (Q8MVS5) Polypeptide N-acetylgalactosaminyltransferase 35A (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           35A) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 35A) (pp-GaNTase 35A)
           (Protein l(2)35Aa) (dGalNAc-T1)
          Length = 632

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 452 VWNSAILFWTNSLRRLSPMIGYSIEDGGSMPHVSM 348
           VW  A+LF+++SLR      G+ I++G + P   +
Sbjct: 22  VWLLALLFYSHSLRSSIRSAGWRIDEGNATPRAEL 56

>ARHG1_MOUSE (Q61210) Rho guanine nucleotide exchange factor 1 (Lymphoid blast|
           crisis-like 2) (Lbc's second cousin)
          Length = 920

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 256 REIYEHAVLLSVKMEDQDAFERDFCQLKPYYMDTCGILPPS 378
           +EI E+ + L V +   +  E +FC+L+P      G L P+
Sbjct: 867 QEIEENLLSLEVAIRQLEELEEEFCRLRPLLSQLGGTLSPN 907

>CAPP_SYNP6 (P06516) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
            (PEPC)
          Length = 1053

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 181  LLTKFPSLPPLFQQTPNAVEEL--KLAREIYEHAVLLSVKMEDQDAFERDFCQLKPYYMD 354
            LL  F    P F+   + VE    K+  +I  H V      EDQ+ FER F Q+   +  
Sbjct: 907  LLRYFYEKWPFFRMVISKVEMTLAKVDLQIAHHYVHELANPEDQERFERVFSQIAAEFQL 966

Query: 355  TCGIL 369
            TC ++
Sbjct: 967  TCHLV 971


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,363,206
Number of Sequences: 219361
Number of extensions: 1179291
Number of successful extensions: 3974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3966
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)