ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart13e01 |
|---|---|
| Clone Library Name | barley_pub |
>YAN9_SCHPO (Q10074) Hypothetical protein C3H1.09c in chromosome I| Length = 656 Score = 41.2 bits (95), Expect = 0.002 Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 13/141 (9%) Frame = +3 Query: 195 RTIHPSM----APEVKVPLLEGRGATPAQTLGN---------IVVSIVGTGVLGLPFAFR 335 R ++PS+ P + PL+ G QT GN ++ S VGTGVL LP AF+ Sbjct: 242 RDVNPSLIHSTVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFK 301 Query: 336 TXXXXXXXXXXXXXXXXTFYCMLLLLDCRDKLREQETEEDGLGDEQRRHGDGGNYTYGDL 515 + C LLL+ R K+ ++GD+ Sbjct: 302 LGGLVFSSATLLIVGVLSHICFLLLIQTRMKVPG---------------------SFGDI 340 Query: 516 GERCFGPVGRHFTEAIIVLCQ 578 G +GP R A IV+ Q Sbjct: 341 GGTLYGPHMRFAILASIVVSQ 361
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 35.0 bits (79), Expect = 0.16 Identities = 30/114 (26%), Positives = 39/114 (34%) Frame = +3 Query: 231 VPLLEGRGATPAQTLGNIVVSIVGTGVLGLPFAFRTXXXXXXXXXXXXXXXXTFYCMLLL 410 V LL G+ P QT+ N + ++G G+L LP + TF LL Sbjct: 201 VTLLAGQSTAP-QTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELL 259 Query: 411 LDCRDKLREQETEEDGLGDEQRRHGDGGNYTYGDLGERCFGPVGRHFTEAIIVL 572 C D D +Y DLG FG GR A+ L Sbjct: 260 SRCLDT-------------------DPTLISYADLGYAAFGTKGRALISALFTL 294
>HLDE_RHILO (Q98I54) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 496 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 213 MAPEVKVPLLEGRGATPAQ-TLGNIVVSIVGTGVLGLP 323 ++PE +P+L GRG T A GN+V +IV G +P Sbjct: 43 ISPEAPIPVLHGRGETSAMGGAGNVVANIVSLGARAIP 80
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 32.3 bits (72), Expect = 1.0 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +3 Query: 210 SMAPEVKVPLLEGRGATPAQTLGNIVVSIVGTGVLGLPFAFRTXXXXXXXXXXXXXXXXT 389 S +P L E T QTL +++ +GTG+LGLP A + Sbjct: 31 SFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVA 90 Query: 390 FYCMLLLLDCRDKL 431 +CM +L+ C L Sbjct: 91 VHCMGILVKCAHHL 104
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 32.3 bits (72), Expect = 1.0 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +3 Query: 210 SMAPEVKVPLLEGRGATPAQTLGNIVVSIVGTGVLGLPFAFRTXXXXXXXXXXXXXXXXT 389 S +P L E T QTL +++ +GTG+LGLP A + Sbjct: 31 SFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVA 90 Query: 390 FYCMLLLLDCRDKL 431 +CM +L+ C L Sbjct: 91 VHCMGILVKCAHHL 104
>AVT3_YEAST (P36062) Vacuolar amino acid transporter 3| Length = 692 Score = 32.0 bits (71), Expect = 1.3 Identities = 31/125 (24%), Positives = 44/125 (35%) Frame = +3 Query: 204 HPSMAPEVKVPLLEGRGATPAQTLGNIVVSIVGTGVLGLPFAFRTXXXXXXXXXXXXXXX 383 HP + VK LL ++ S VGTGVL LP AF Sbjct: 293 HPHKSSTVKAVLL-------------LLKSFVGTGVLFLPKAFHNGGWGFSALCLLSCAL 339 Query: 384 XTFYCMLLLLDCRDKLREQETEEDGLGDEQRRHGDGGNYTYGDLGERCFGPVGRHFTEAI 563 ++ C + L+ +DK+ G YGD+G +GP + + Sbjct: 340 ISYGCFVSLITTKDKV--------------------GVDGYGDMGRILYGPKMKFAILSS 379 Query: 564 IVLCQ 578 I L Q Sbjct: 380 IALSQ 384
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = +3 Query: 243 EGRGATPAQTLGNIVVSIVGTGVLGLPFAFRTXXXXXXXXXXXXXXXXTFYCMLLLLDC 419 + T QTL +++ +GTG+LGLP A + +CM +L+ C Sbjct: 43 QSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKC 101
>ATG1_CRYNE (Q5K8D3) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 988 Score = 30.8 bits (68), Expect = 2.9 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Frame = -3 Query: 316 PSTPVPTMDTTMFPSVCAG----------VAPLPSSSGTFTSGAMEGWMVRQTD*QRANP 167 PS P PT +T P G + P PSS+ T TS G +Q+ RANP Sbjct: 423 PSRPTPTRRST--PKYYVGDATPSEPTAIIPPSPSSAPTPTSAPDPGLTTQQSPTSRANP 480 Query: 166 RAAAQDQSS*RPRHVVIGHG 107 R SS + R G G Sbjct: 481 RPIITAASSAQRRMSGKGDG 500
>AVT4_YEAST (P50944) Vacuolar amino acid transporter 4| Length = 713 Score = 30.0 bits (66), Expect = 5.0 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Frame = +3 Query: 219 PEVKVPLLEGRGATPAQTLGNIVV-SIVGTGVLGLPFAFRTXXXXXXXXXXXXXXXXTFY 395 P+ L +G T + + I++ S +GTGVL LP AF +++ Sbjct: 284 PDHMKVLPSAKGTTSTKKVFLILLKSFIGTGVLFLPNAFHNGGLFFSVSMLAFFGIYSYW 343 Query: 396 CMLLLLDCRDKLREQETEEDGLGDEQRRHGDGGNYTYGDLGERCFGP 536 C +L+ + G ++GD+G + +GP Sbjct: 344 CYYILVQAKSSC--------------------GVSSFGDIGLKLYGP 370 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,642,198 Number of Sequences: 219361 Number of extensions: 1069440 Number of successful extensions: 3339 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3337 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
