>PAX8_RAT (P51974) Paired box protein Pax-8|
          Length = 458

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
 Frame = +2

Query: 32  TLLPSPRLLPDKIPSGINFXXXXXXXXXXXXXXXGENRRRARCNDPG-ALCH-------G 187
           TL+PS  + P + P   +                G +  R RC+D     C         
Sbjct: 158 TLIPSSAVTPPESPQSDSLGSTYSIHGLLGIAQAGSDTHRGRCDDSDQGQCRLSIDSQSS 217

Query: 188 RASPRSHRRAGTGGQSRPEPL 250
            + PR H R  T GQ   EPL
Sbjct: 218 SSGPRKHLRTDTFGQHHLEPL 238

>SIVA_HUMAN (O15304) Apoptosis regulatory protein Siva (CD27-binding protein)|
           (CD27BP)
          Length = 175

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 1/113 (0%)
 Frame = +1

Query: 199 PEPPE-GWDGRPVSSRAASIAGMQSQIVCHRCRRVLAYPSGAPSVCCAMCRAITXXXXXX 375
           PE P+ G  G P ++R   + G   +++    +   A PSG  S+ C+ C  +       
Sbjct: 68  PESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSC--VRAVDGKA 125

Query: 376 XXXEMAQLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPANNIAHVNCGRCRT 534
              +  + +CG C   +       +V C+ C  V+       +   +C    T
Sbjct: 126 VCGQCERALCGQC---VRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 175

>WDR24_XENLA (Q7ZX22) WD-repeat protein 24|
          Length = 780

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 451 VRCSCCSTVNLVRPANNIAHVNCGRCR 531
           ++ S CS++N +  A+   HVNC  C+
Sbjct: 687 IKLSTCSSINCLNQASTTLHVNCSNCK 713

>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3020

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +3

Query: 258  RYAEPDRVPPLPEGAGLPVRGAQRVLRHVPSHHRRATPSASSGNGSA 398
            R+  PD VPP   G  LP RGA      VP   R+ T      N SA
Sbjct: 2305 RWKAPDYVPPTVHGCALPPRGAP----PVPPPRRKRTIQLDGSNVSA 2347

>POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3020

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 258  RYAEPDRVPPLPEGAGLPVRGAQRVLRHVPSHHRRATPSASSGNGSA 398
            R+  PD VPP   G  LP +GA      VP   R+ T      N SA
Sbjct: 2305 RWKSPDYVPPTVHGCALPPKGAP----PVPPPRRKRTIQLDGSNVSA 2347

>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)|
          Length = 203

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 258 RYAEPDR-----VPPLPEGAGLPVRGAQRVLRHVPSHHRRATPSASSG 386
           R  EPDR     V P+PEGAG P RG       +P     A P A++G
Sbjct: 4   RPQEPDRAASDPVEPVPEGAGRPPRG------DLPQPGPPARPEATNG 45

>WDR24_CHICK (Q5ZMV9) WD-repeat protein 24|
          Length = 705

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 445 DTVRCSCCSTVNLVRPANNIAHVNCGRCR 531
           + ++ S C  +N +  A+   H+NC  C+
Sbjct: 610 EVIKLSTCRAINCLNQASTTLHINCSNCK 638


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,416,694
Number of Sequences: 219361
Number of extensions: 1609469
Number of successful extensions: 5158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5156
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)