Clone Information

BLAST Search Result

Clone Name	bart13c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475642.1\| Oryza sativa (japonica cultivar-group), predic...	276	8e-71
2	dbj\|AK066161.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	276	8e-71
3	gb\|AC124144.2\| Oryza sativa (japonica cultivar-group) chromosome...	86	1e-13
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	86	1e-13
5	emb\|CT010443.3\| M.truncatula DNA sequence from clone MTH2-76G21 ...	58	3e-05
6	gb\|AC138017.15\| Medicago truncatula clone mth2-6i3, complete seq...	58	3e-05
7	gb\|AC146819.19\| Medicago truncatula clone mth2-176k6, complete s...	54	5e-04
8	gb\|AC133341.11\| Medicago truncatula clone mth2-28i3, complete se...	54	5e-04
9	ref\|NM_132853.2\| Drosophila melanogaster Arginyl-tRNA synthetase...	48	0.032
10	gb\|AY070924.1\| Drosophila melanogaster RE02962 full length cDNA	48	0.032
11	gb\|AC092401.1\|AC092401 Drosophila melanogaster, chromosome X, re...	48	0.032
12	gb\|AC013431.9\|AC013431 Drosophila melanogaster, chromosome X, re...	48	0.032
13	gb\|AY103885.1\| Zea mays PCO145718 mRNA sequence	48	0.032
14	gb\|AE003500.4\| Drosophila melanogaster chromosome X, section 52 ...	48	0.032
15	ref\|XM_816031.1\| Trypanosoma cruzi strain CL Brener arginyl-tRNA...	44	0.50
16	ref\|XM_776166.1\| PREDICTED: Strongylocentrotus purpuratus simila...	44	0.50
17	gb\|AC097382.3\| Homo sapiens BAC clone RP11-367J11 from 4, comple...	44	0.50
18	ref\|XM_509080.1\| PREDICTED: Pan troglodytes similar to keratin 1...	42	2.0
19	gb\|BC028294.1\| Homo sapiens mRNA similar to keratin 1 (epidermol...	42	2.0
20	emb\|BX511062.12\| Zebrafish DNA sequence from clone CH211-266M11 ...	42	2.0
21	ref\|NM_006121.2\| Homo sapiens keratin 1 (epidermolytic hyperkera...	42	2.0
22	emb\|BX119986.8\| Mouse DNA sequence from clone RP23-440J5 on chro...	42	2.0
23	gb\|BC063697.1\| Homo sapiens keratin 1 (epidermolytic hyperkerato...	42	2.0
24	gb\|M10938.1\|HUMKTEP2A Human epidermal 67-kDa type II keratin mRNA	42	2.0
25	ref\|NM_105324.1\| Arabidopsis thaliana ATP binding / arginine-tRN...	40	7.9
26	gb\|AC007578.6\| Drosophila melanogaster clone BACR09A11, complete...	40	7.9
27	gb\|AY358115.1\| Homo sapiens clone DNA183018 DAAT9248 (UNQ9248) m...	40	7.9
28	emb\|AL939123.1\|SCO939123 Streptomyces coelicolor A3(2) complete ...	40	7.9
29	gb\|BC070893.1\| Rattus norvegicus SH3-domain GRB2-like 1, mRNA (c...	40	7.9
30	gb\|AC015914.8\| Homo sapiens chromosome 15, clone RP11-111E14, co...	40	7.9
31	gb\|AY093956.1\| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, co...	40	7.9
32	ref\|NM_165841.1\| Drosophila melanogaster engrailed CG9015-RB, tr...	40	7.9
33	ref\|NM_078976.3\| Drosophila melanogaster engrailed CG9015-RA, tr...	40	7.9
34	gb\|AF375433.1\| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, co...	40	7.9
35	gb\|AY069448.1\| Drosophila melanogaster LD16125 full length cDNA	40	7.9
36	ref\|NM_031239.2\| Rattus norvegicus SH3-domain GRB2-like 1 (Sh3gl...	40	7.9
37	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
38	gb\|AC093719.26\| Homo sapiens 12 BAC RP11-549I9 (Roswell Park Can...	40	7.9
39	gb\|AC011246.6\| Homo sapiens BAC clone RP11-498O20 from 2, comple...	40	7.9
40	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	7.9
41	ref\|XM_215524.3\| PREDICTED: Rattus norvegicus tumor protein D52 ...	40	7.9
42	dbj\|AK104114.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.9
43	dbj\|AK101325.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.9
44	dbj\|AK060041.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.9
45	gb\|AE003825.3\| Drosophila melanogaster chromosome 2R, section 25...	40	7.9
46	emb\|AL954180.6\| Zebrafish DNA sequence from clone CH211-222A10, ...	40	7.9
47	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.9
48	ref\|NM_001004432.1\| Homo sapiens leucine rich repeat neuronal 6D...	40	7.9
49	emb\|AL928745.3\|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb...	40	7.9
50	gb\|AF009602.1\|AF009602 Rattus norvegicus SH3p8 mRNA, complete cds	40	7.9
51	gb\|M10017.1\|DROENGM Drosophila melanogaster engrailed protein (e...	40	7.9
52	dbj\|AB008161.1\| Rattus norvegicus mRNA for SH3P8, complete cds	40	7.9

>ref|XM_475642.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score =  276 bits (139), Expect = 8e-71
 Identities = 255/294 (86%)
 Strand = Plus / Plus

                                                                       
Query: 287 gaagtggatgtagaaccgatagttgaagtttgcacgggaaaatttggtgactaccagtgc 346
           |||||||| || || || || |||||||| ||||| | ||| ||||||||||||||||||
Sbjct: 124 gaagtggaagtcgatcctatggttgaagtctgcacagcaaagtttggtgactaccagtgc 183

                                                                       
Query: 347 aacaatgcaatgggattgtggtcaaaagtaaagggatccgggacaagcttcaaaaacccc 406
           ||||||||||||||||| ||||||| | | || ||||| || ||||| ||||| ||||||
Sbjct: 184 aacaatgcaatgggattatggtcaagaattaaaggatctggaacaagtttcaagaacccc 243

                                                                       
Query: 407 aatgcaattggacagtcgattgctaagaacctgcctgcctgtgacgttattgaatcagcc 466
           ||||||||||||||| | ||||| |||||||||||| | | |||  ||||||||||  | 
Sbjct: 244 aatgcaattggacaggccattgcgaagaacctgcctccgtctgatattattgaatccaca 303

                                                                       
Query: 467 tctgttgctggtcctggttttgtgaatattgtcttatccaagagctgggttgctaagaga 526
           ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 304 tctgtcgctggacctggttttgtgaatattgtcttgtccaacagctgggttgcaaagaga 363

                                                                 
Query: 527 atacaagatatgcttgtgaatggtatncaaacttgggcaccaattcttccagtt 580
           ||||||||||||||||||||||||||  |||| ||||||||||| || ||||||
Sbjct: 364 atacaagatatgcttgtgaatggtatcaaaacatgggcaccaatcctgccagtt 417

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>dbj|AK066161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052F22, full
           insert sequence
          Length = 2136

 Score =  276 bits (139), Expect = 8e-71
 Identities = 255/294 (86%)
 Strand = Plus / Plus

                                                                       
Query: 287 gaagtggatgtagaaccgatagttgaagtttgcacgggaaaatttggtgactaccagtgc 346
           |||||||| || || || || |||||||| ||||| | ||| ||||||||||||||||||
Sbjct: 297 gaagtggaagtcgatcctatggttgaagtctgcacagcaaagtttggtgactaccagtgc 356

                                                                       
Query: 347 aacaatgcaatgggattgtggtcaaaagtaaagggatccgggacaagcttcaaaaacccc 406
           ||||||||||||||||| ||||||| | | || ||||| || ||||| ||||| ||||||
Sbjct: 357 aacaatgcaatgggattatggtcaagaattaaaggatctggaacaagtttcaagaacccc 416

                                                                       
Query: 407 aatgcaattggacagtcgattgctaagaacctgcctgcctgtgacgttattgaatcagcc 466
           ||||||||||||||| | ||||| |||||||||||| | | |||  ||||||||||  | 
Sbjct: 417 aatgcaattggacaggccattgcgaagaacctgcctccgtctgatattattgaatccaca 476

                                                                       
Query: 467 tctgttgctggtcctggttttgtgaatattgtcttatccaagagctgggttgctaagaga 526
           ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 477 tctgtcgctggacctggttttgtgaatattgtcttgtccaacagctgggttgcaaagaga 536

                                                                 
Query: 527 atacaagatatgcttgtgaatggtatncaaacttgggcaccaattcttccagtt 580
           ||||||||||||||||||||||||||  |||| ||||||||||| || ||||||
Sbjct: 537 atacaagatatgcttgtgaatggtatcaaaacatgggcaccaatcctgccagtt 590



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 75/85 (88%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                       
Query: 90  tcggtcattgtagagcatctcccttcacaaggttaccgaggagtgcctgctacgcgtcca 149
           |||||||||||||||||||| ||| | ||||||  |||||||| ||||||||||||   |
Sbjct: 112 tcggtcattgtagagcatcttcctccgcaaggtctccgaggagggcctgctacgcg---a 168

                                    
Query: 150 ccaccatgggagacgagacctccac 174
           |||||||||| ||||||||||||||
Sbjct: 169 ccaccatgggggacgagacctccac 193

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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                         
Query: 425   attgctaagaacctgcctgcctgtgacgttattgaatcagcctctgttgctggtcctggt 484
             ||||| |||||||||||| | | |||  ||||||||||  | ||||| ||||| ||||||
Sbjct: 53234 attgcgaagaacctgcctccgtctgatattattgaatccacatctgtcgctggacctggt 53293

                                                
Query: 485   tttgtgaatattgtcttatccaagagctgggttgc 519
             ||||||||||||||||| ||||| |||||||||||
Sbjct: 53294 tttgtgaatattgtcttgtccaacagctgggttgc 53328



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                         
Query: 345   gcaacaatgcaatgggattgtggtcaaaagtaaagggatccgggacaagcttcaaaaacc 404
             ||||||||||||||||||| ||||||| | | || ||||| || ||||| ||||| ||||
Sbjct: 52981 gcaacaatgcaatgggattatggtcaagaattaaaggatctggaacaagtttcaagaacc 53040

                              
Query: 405   ccaatgcaattggacag 421
             |||||||||||||||||
Sbjct: 53041 ccaatgcaattggacag 53057



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                         
Query: 92    ggtcattgtagagcatctcccttcacaaggttaccgaggagtgcctgctacgcgtccacc 151
             |||||||||||||||||| ||| | ||||||  |||||||| ||||||||||||   |||
Sbjct: 52505 ggtcattgtagagcatcttcctccgcaaggtctccgaggagggcctgctacgcg---acc 52561

                                    
Query: 152   accatgggagacgagacctccac 174
             |||||||| ||||||||||||||
Sbjct: 52562 accatgggggacgagacctccac 52584



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 522   agagaatacaagatatgcttgtgaatggtatncaaacttgggcaccaattcttccagtt 580
             |||||||||||||||||||||||||||||||  |||| ||||||||||| || ||||||
Sbjct: 53420 agagaatacaagatatgcttgtgaatggtatcaaaacatgggcaccaatcctgccagtt 53478



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 287   gaagtggatgtagaaccgatagttgaagtttgcacgggaaaatttggtgactaccagtg 345
             |||||||| || || || || |||||||| ||||| | ||| |||||||||||||||||
Sbjct: 52796 gaagtggaagtcgatcctatggttgaagtctgcacagcaaagtttggtgactaccagtg 52854

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                           
Query: 425     attgctaagaacctgcctgcctgtgacgttattgaatcagcctctgttgctggtcctggt 484
               ||||| |||||||||||| | | |||  ||||||||||  | ||||| ||||| ||||||
Sbjct: 3630887 attgcgaagaacctgcctccgtctgatattattgaatccacatctgtcgctggacctggt 3630946

                                                  
Query: 485     tttgtgaatattgtcttatccaagagctgggttgc 519
               ||||||||||||||||| ||||| |||||||||||
Sbjct: 3630947 tttgtgaatattgtcttgtccaacagctgggttgc 3630981



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                           
Query: 345     gcaacaatgcaatgggattgtggtcaaaagtaaagggatccgggacaagcttcaaaaacc 404
               ||||||||||||||||||| ||||||| | | || ||||| || ||||| ||||| ||||
Sbjct: 3630634 gcaacaatgcaatgggattatggtcaagaattaaaggatctggaacaagtttcaagaacc 3630693

                                
Query: 405     ccaatgcaattggacag 421
               |||||||||||||||||
Sbjct: 3630694 ccaatgcaattggacag 3630710



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                           
Query: 92      ggtcattgtagagcatctcccttcacaaggttaccgaggagtgcctgctacgcgtccacc 151
               |||||||||||||||||| ||| | ||||||  |||||||| ||||||||||||   |||
Sbjct: 3630158 ggtcattgtagagcatcttcctccgcaaggtctccgaggagggcctgctacgcg---acc 3630214

                                      
Query: 152     accatgggagacgagacctccac 174
               |||||||| ||||||||||||||
Sbjct: 3630215 accatgggggacgagacctccac 3630237



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                          
Query: 522     agagaatacaagatatgcttgtgaatggtatncaaacttgggcaccaattcttccagtt 580
               |||||||||||||||||||||||||||||||  |||| ||||||||||| || ||||||
Sbjct: 3631073 agagaatacaagatatgcttgtgaatggtatcaaaacatgggcaccaatcctgccagtt 3631131



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 287     gaagtggatgtagaaccgatagttgaagtttgcacgggaaaatttggtgactaccagtg 345
               |||||||| || || || || |||||||| ||||| | ||| |||||||||||||||||
Sbjct: 3630449 gaagtggaagtcgatcctatggttgaagtctgcacagcaaagtttggtgactaccagtg 3630507

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>emb|CT010443.3| M.truncatula DNA sequence from clone MTH2-76G21 on chromosome 3,
             complete sequence
          Length = 111543

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 466   ctctgttgctggtcctggttttgtgaatattgtcttatccaagagctgg 514
             ||||||||| |||||||| ||||| |||||||||||||| |||| ||||
Sbjct: 35309 ctctgttgcgggtcctggatttgtcaatattgtcttatcaaagaactgg 35357

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>gb|AC138017.15| Medicago truncatula clone mth2-6i3, complete sequence
          Length = 129585

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 466  ctctgttgctggtcctggttttgtgaatattgtcttatccaagagctgg 514
            ||||||||| |||||||| ||||| |||||||||||||| |||| ||||
Sbjct: 7944 ctctgttgcgggtcctggatttgtcaatattgtcttatcaaagaactgg 7992

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>gb|AC146819.19| Medicago truncatula clone mth2-176k6, complete sequence
          Length = 127131

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 466   ctctgttgctggtcctggttttgtgaatattgtcttatc 504
             ||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 22417 ctctgttgccggtcttggatttgtgaatattgtcttatc 22379

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>gb|AC133341.11| Medicago truncatula clone mth2-28i3, complete sequence
          Length = 138850

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 466   ctctgttgctggtcctggttttgtgaatattgtcttatc 504
             ||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 15751 ctctgttgccggtcttggatttgtgaatattgtcttatc 15789

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>ref|NM_132853.2| Drosophila melanogaster Arginyl-tRNA synthetase CG9020-RA
           (Aats-arg), mRNA
          Length = 2132

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 326 aaatttggtgactaccagtgcaacaatgcaatgggattgt 365
           ||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 395 aaattcggcgactatcagtgcaacaatgccatgggattgt 434

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>gb|AY070924.1| Drosophila melanogaster RE02962 full length cDNA
          Length = 2141

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 326 aaatttggtgactaccagtgcaacaatgcaatgggattgt 365
           ||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 395 aaattcggcgactatcagtgcaacaatgccatgggattgt 434

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>gb|AC092401.1|AC092401 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone
              BACR25C18, complete sequence
          Length = 185200

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 326    aaatttggtgactaccagtgcaacaatgcaatgggattgt 365
              ||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 155158 aaattcggcgactatcagtgcaacaatgccatgggattgt 155119

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>gb|AC013431.9|AC013431 Drosophila melanogaster, chromosome X, region 13E-13F, BAC clone
              BACR22H11, complete sequence
          Length = 191558

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 326    aaatttggtgactaccagtgcaacaatgcaatgggattgt 365
              ||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 133888 aaattcggcgactatcagtgcaacaatgccatgggattgt 133849

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>gb|AY103885.1| Zea mays PCO145718 mRNA sequence
          Length = 1503

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 53  ctcctcctcgtctccgcccgccgc 76
           ||||||||||||||||||||||||
Sbjct: 329 ctcctcctcgtctccgcccgccgc 352

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>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete
              sequence
          Length = 303344

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 326    aaatttggtgactaccagtgcaacaatgcaatgggattgt 365
              ||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 137878 aaattcggcgactatcagtgcaacaatgccatgggattgt 137839

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>ref|XM_816031.1| Trypanosoma cruzi strain CL Brener arginyl-tRNA synthetase
           (Tc00.1047053508355.320) partial mRNA
          Length = 2079

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 338 taccagtgcaacaatgcaatgggatt 363
           ||||||||||||||||| ||||||||
Sbjct: 130 taccagtgcaacaatgcgatgggatt 155

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>ref|XM_776166.1| PREDICTED: Strongylocentrotus purpuratus similar to arginyl-tRNA
           synthetase (LOC575790), mRNA
          Length = 1998

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 329 tttggtgactaccagtgcaacaatgcaatg 358
           ||||| |||||||||||||||| |||||||
Sbjct: 340 tttggagactaccagtgcaacagtgcaatg 369

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>gb|AC097382.3| Homo sapiens BAC clone RP11-367J11 from 4, complete sequence
          Length = 210515

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 170    tccacttctgcctcaggctcgg 191
              ||||||||||||||||||||||
Sbjct: 201470 tccacttctgcctcaggctcgg 201449

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>ref|XM_509080.1| PREDICTED: Pan troglodytes similar to keratin 1; Keratin-1;
           cytokeratin 1; hair alpha protein (LOC451920), mRNA
          Length = 1676

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 232 tgtcaagcagcagatctccaacttg 256
           ||||||| |||||||||||||||||
Sbjct: 440 tgtcaagaagcagatctccaacttg 464

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>gb|BC028294.1| Homo sapiens mRNA similar to keratin 1 (epidermolytic hyperkeratosis)
            (cDNA clone IMAGE:4779138)
          Length = 3114

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 232  tgtcaagcagcagatctccaacttg 256
            ||||||| |||||||||||||||||
Sbjct: 1913 tgtcaagaagcagatctccaacttg 1937

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>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17,
             complete sequence
          Length = 131970

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 521   aagagaatacaagatatgctt 541
             |||||||||||||||||||||
Sbjct: 93553 aagagaatacaagatatgctt 93533

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>ref|NM_006121.2| Homo sapiens keratin 1 (epidermolytic hyperkeratosis) (KRT1), mRNA
          Length = 2507

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 232  tgtcaagcagcagatctccaacttg 256
            ||||||| |||||||||||||||||
Sbjct: 1289 tgtcaagaagcagatctccaacttg 1313

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>emb|BX119986.8| Mouse DNA sequence from clone RP23-440J5 on chromosome X, complete
             sequence
          Length = 196937

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 427   tgctaagaacctgcctgcctg 447
             |||||||||||||||||||||
Sbjct: 20770 tgctaagaacctgcctgcctg 20790

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>gb|BC063697.1| Homo sapiens keratin 1 (epidermolytic hyperkeratosis), mRNA (cDNA
            clone MGC:75449 IMAGE:4746001), complete cds
          Length = 2470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 232  tgtcaagcagcagatctccaacttg 256
            ||||||| |||||||||||||||||
Sbjct: 1283 tgtcaagaagcagatctccaacttg 1307

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>gb|M10938.1|HUMKTEP2A Human epidermal 67-kDa type II keratin mRNA
          Length = 1924

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 232 tgtcaagcagcagatctccaacttg 256
           ||||||| |||||||||||||||||
Sbjct: 789 tgtcaagaagcagatctccaacttg 813

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>ref|NM_105324.1| Arabidopsis thaliana ATP binding / arginine-tRNA ligase/ tRNA
           ligase AT1G66530 mRNA, complete cds
          Length = 1991

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 326 aaatttggtgactaccagtgcaacaatgcaatggga 361
           |||||||| || ||||| || |||||||||||||||
Sbjct: 195 aaatttggagattaccaatgtaacaatgcaatggga 230

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>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence
          Length = 170684

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 5     gcggccgcagcagcaactgcagtagtggcggc 36
             ||||||||||||||| |||||| || ||||||
Sbjct: 33998 gcggccgcagcagcagctgcagcagcggcggc 33967

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>gb|AY358115.1| Homo sapiens clone DNA183018 DAAT9248 (UNQ9248) mRNA, complete
          cds
          Length = 2609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 3  tcgcggccgcagcagcaactgcag 26
          ||||||||||||||||||| ||||
Sbjct: 2  tcgcggccgcagcagcaacagcag 25

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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cctcgtctccgcccgccgcg 77
              ||||||||||||||||||||
Sbjct: 133359 cctcgtctccgcccgccgcg 133378

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>gb|BC070893.1| Rattus norvegicus SH3-domain GRB2-like 1, mRNA (cDNA clone
          MGC:91401 IMAGE:7099223), complete cds
          Length = 2035

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 29 gtggcggcgcctacccccgc 48
          ||||||||||||||||||||
Sbjct: 39 gtggcggcgcctacccccgc 58

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>gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, complete sequence
          Length = 170078

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     gcagcagcaactgcagtagt 30
              ||||||||||||||||||||
Sbjct: 104930 gcagcagcaactgcagtagt 104911

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>gb|AY093956.1| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, complete cds
          Length = 1773

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 326 aaatttggtgactaccagtgcaacaatgcaatggga 361
           |||||||| || ||||| || |||||||||||||||
Sbjct: 130 aaatttggagattaccaatgtaacaatgcaatggga 165

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>ref|NM_165841.1| Drosophila melanogaster engrailed CG9015-RB, transcript variant B
           (en), mRNA
          Length = 2794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 5   gcggccgcagcagcaactgcagtagtggcggc 36
           ||||||||||||||| |||||| || ||||||
Sbjct: 782 gcggccgcagcagcagctgcagcagcggcggc 751

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>ref|NM_078976.3| Drosophila melanogaster engrailed CG9015-RA, transcript variant A
           (en), mRNA
          Length = 2467

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 5   gcggccgcagcagcaactgcagtagtggcggc 36
           ||||||||||||||| |||||| || ||||||
Sbjct: 455 gcggccgcagcagcagctgcagcagcggcggc 424

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>gb|AF375433.1| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, complete cds
          Length = 1991

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 326 aaatttggtgactaccagtgcaacaatgcaatggga 361
           |||||||| || ||||| || |||||||||||||||
Sbjct: 195 aaatttggagattaccaatgtaacaatgcaatggga 230

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>gb|AY069448.1| Drosophila melanogaster LD16125 full length cDNA
          Length = 2458

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 5   gcggccgcagcagcaactgcagtagtggcggc 36
           ||||||||||||||| |||||| || ||||||
Sbjct: 435 gcggccgcagcagcagctgcagcagcggcggc 404

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>ref|NM_031239.2| Rattus norvegicus SH3-domain GRB2-like 1 (Sh3gl1), mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 29 gtggcggcgcctacccccgc 48
          ||||||||||||||||||||
Sbjct: 43 gtggcggcgcctacccccgc 62

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 53       ctcctcctcgtctccgcccgccgc 76
                |||||||||||||||| |||||||
Sbjct: 22746937 ctcctcctcgtctccggccgccgc 22746914

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>gb|AC093719.26| Homo sapiens 12 BAC RP11-549I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 79925

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   tggttttgtgaatattgtct 500
             ||||||||||||||||||||
Sbjct: 47965 tggttttgtgaatattgtct 47984

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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ccaccaccatgggagacgag 166
             ||||||||||||||||||||
Sbjct: 59257 ccaccaccatgggagacgag 59276

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 67      cgcccgccgcgctgctccgc 86
               ||||||||||||||||||||
Sbjct: 2059514 cgcccgccgcgctgctccgc 2059533

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>ref|XM_215524.3| PREDICTED: Rattus norvegicus tumor protein D52 (predicted)
          (Tpd52_predicted), mRNA
          Length = 695

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 64 ctccgcccgccgcgctgctccgcg 87
          |||||||||||||||| |||||||
Sbjct: 44 ctccgcccgccgcgctcctccgcg 21

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>dbj|AK104114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H10,
          full insert sequence
          Length = 962

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 53 ctcctcctcgtctccgcccgccgc 76
          |||||||||||||||| |||||||
Sbjct: 32 ctcctcctcgtctccggccgccgc 55

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>dbj|AK101325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034F22,
          full insert sequence
          Length = 949

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 53 ctcctcctcgtctccgcccgccgc 76
          |||||||||||||||| |||||||
Sbjct: 29 ctcctcctcgtctccggccgccgc 52

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>dbj|AK060041.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C08,
          full insert sequence
          Length = 985

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 53 ctcctcctcgtctccgcccgccgc 76
          |||||||||||||||| |||||||
Sbjct: 54 ctcctcctcgtctccggccgccgc 77

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>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
             sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 5     gcggccgcagcagcaactgcagtagtggcggc 36
             ||||||||||||||| |||||| || ||||||
Sbjct: 62124 gcggccgcagcagcagctgcagcagcggcggc 62155

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>emb|AL954180.6| Zebrafish DNA sequence from clone CH211-222A10, complete sequence
          Length = 225504

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 242   cagatctccaacttggtggctctgtcac 269
             ||||||||||| |||||| |||||||||
Sbjct: 72491 cagatctccaatttggtgcctctgtcac 72464

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 53       ctcctcctcgtctccgcccgccgc 76
                |||||||||||||||| |||||||
Sbjct: 22675128 ctcctcctcgtctccggccgccgc 22675105

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>ref|NM_001004432.1| Homo sapiens leucine rich repeat neuronal 6D (LRRN6D), mRNA
          Length = 2609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 3  tcgcggccgcagcagcaactgcag 26
          ||||||||||||||||||| ||||
Sbjct: 2  tcgcggccgcagcagcaacagcag 25

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>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    ctcctcctcgtctccgcccgccgc 76
             |||||||||||||||| |||||||
Sbjct: 58787 ctcctcctcgtctccggccgccgc 58764

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>gb|AF009602.1|AF009602 Rattus norvegicus SH3p8 mRNA, complete cds
          Length = 1546

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 29 gtggcggcgcctacccccgc 48
          ||||||||||||||||||||
Sbjct: 28 gtggcggcgcctacccccgc 47

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>gb|M10017.1|DROENGM Drosophila melanogaster engrailed protein (en) mRNA, complete cds
          Length = 2412

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 5   gcggccgcagcagcaactgcagtagtggcggc 36
           ||||||||||||||| |||||| || ||||||
Sbjct: 410 gcggccgcagcagcagctgcagcagcggcggc 379

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>dbj|AB008161.1| Rattus norvegicus mRNA for SH3P8, complete cds
          Length = 2010

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 29 gtggcggcgcctacccccgc 48
          ||||||||||||||||||||
Sbjct: 43 gtggcggcgcctacccccgc 62


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,724,526
Number of Sequences: 3902068
Number of extensions: 4724526
Number of successful extensions: 92764
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92391
Number of HSP's gapped (non-prelim): 370
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result