>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)|
          Length = 1819

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 105  MASNYVDTTGEEGRFHTHGHHSNSTTPTGEAASP-KNTRRRW 227
            +  N  D    + R++THGH SN++   GE+ S    TR RW
Sbjct: 1063 VGENVSDVAPTQPRWNTHGHVSNASISLGESVSDVAPTRPRW 1104

>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +3

Query: 15  GTSSPPGSCILPSPPLLACRF--LGTGKQGTEMASNYVDTTGEEGRFHTHGHHSNSTTPT 188
           G + PPGS  LP PP L C    LG      +         G  GR  T G       P 
Sbjct: 532 GRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDP- 590

Query: 189 GEAASPKNT 215
           GE   P +T
Sbjct: 591 GEDGKPGDT 599

>FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor winged-helix|
           nude) (Hepatocyte nuclear factor 3 forkhead homolog 11)
           (HNF-3/forkhead homolog 11) (HFH-11)
          Length = 648

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +3

Query: 12  LGTSSPPGSCILPSPPLLACRFLG-----TGKQGTEMASNYVDTTGEEGRFHTHGHHSN- 173
           L TSSP  S +LP PP   C   G     TG +  E+A      +G  G  H    +S  
Sbjct: 561 LVTSSPTSSSMLPPPPAAHCFPPGPCLAETGNEAGELAPPGSGGSGALGDMHLSTLYSAF 620

Query: 174 ---STTPTGEAASP 206
               +TP+  AA P
Sbjct: 621 VELESTPSSAAAGP 634

>TILS_XYLFT (Q87BE2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -1

Query: 103 SVPCFPVPRNLQARRGGEGRMQLPG 29
           +VP FP P  ++ARRGGE R+ LPG
Sbjct: 348 TVPGFPHPLRVRARRGGE-RLILPG 371

>SEM4C_MOUSE (Q64151) Semaphorin-4C precursor (Semaphorin I) (Sema I)|
           (Semaphorin C-like 1) (M-Sema F)
          Length = 834

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 47  PLPSPPRLQISRHRETGDRNGF---QLRGHHRGGGKVPHP 157
           PLPSP RL +   R + + NG+   QL G  RGG   P P
Sbjct: 770 PLPSPTRLHLGGGRNS-NANGYVRLQLGGEDRGGSGHPLP 808

>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +2

Query: 32  GQLHPPLPSPPRLQISRHRETGDRNGFQLRGHHRGGGKVPHPRSP 166
           G   PP P PPR      R    R  F LR   R  G++  PRSP
Sbjct: 795 GPFQPPFPPPPR------RPQSLREAFSLR---RASGRLGPPRSP 830

>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB|
           sensitivity-inducing factor large subunit) (DSIF large
           subunit)
          Length = 1079

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
 Frame = +2

Query: 2   VCRSRHLVSSGQLHPP----------LPSPPRLQISRHRE-TGDRNGFQLRGHHRGGGK 145
           VC++RHLV +G   P            P  PR+    H    G R GF   G  RG G+
Sbjct: 634 VCKTRHLVLAGGSKPRDVTNFTVGSFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGR 692

>TILS_XYLFA (Q9PFJ8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 437

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -1

Query: 103 SVPCFPVPRNLQARRGGEGRMQLPG 29
           +VP FP P  ++ARRGGE R+ LPG
Sbjct: 348 TVPGFPHPLCVRARRGGE-RLILPG 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,833,442
Number of Sequences: 219361
Number of extensions: 867670
Number of successful extensions: 3667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3649
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)