ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12h07 |
|---|---|
| Clone Library Name | barley_pub |
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 32.7 bits (73), Expect = 0.65 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +1 Query: 259 RPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQPRNP 372 +P GA L V PP G AA P P P GGP P +P Sbjct: 1527 QPPGAEAPLPVPPPTGTAAAPAPTPSPAGGP--DPTSP 1562
>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)| Length = 641 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +1 Query: 253 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQP 363 RL P G PPPG GL PGP P G P + P Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)| Length = 641 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +1 Query: 253 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQP 363 RL P G PPPG GL PGP P G P + P Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding| protein SNP70) (Npw38-binding protein) (NpwBP) Length = 641 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +1 Query: 253 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQP 363 RL P G PPPG GL PGP P G P + P Sbjct: 456 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 492
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = +1 Query: 253 RLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQP 363 RL P G PPPG GL PGP P G P + P Sbjct: 422 RLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLP 458
>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein) (WBRS9) (Williams syndrome transcription factor) (hWALP2) Length = 1483 Score = 29.6 bits (65), Expect = 5.5 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = +1 Query: 211 EESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQPRNP 372 EE + + + LRLRP + H PP +G PG P QP+ P Sbjct: 1267 EEEEEEEDYEVAGLRLRPRKTIRGKHSVIPPAARSGRRPGKKPHSTRRSQPKAP 1320
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.6 bits (65), Expect = 5.5 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +1 Query: 259 RPDGALVVLHVQPPPGIAAGLNPGPIPFGGPSKQPRNP 372 +P GA L PP G+AA P P P GGP P +P Sbjct: 1525 QPPGAEAPLPGPPPTGMAATPVPTPSPAGGP--DPTSP 1560
>HCHA_STAAN (P64313) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 184 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPS 354 + VV + SE+ + L WALD+ D +V L P ++AGLN P G S Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYS 212
>HCHA_STAAM (P64312) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 184 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPS 354 + VV + SE+ + L WALD+ D +V L P ++AGLN P G S Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYS 212
>HCHA_STAAC (Q5HIC4) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +1 Query: 184 SVVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGPS 354 + VV + SE+ + L WALD+ D +V L P ++AGLN P G S Sbjct: 161 AAVVGISESEDVQQTLDWALDN-----DRFIVTLCHGPAALLSAGLNREKSPLEGYS 212
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 238 ALDSLRLRPDGALVVLHVQPPPGIAAGLNPGPIPFGGP 351 AL + +P AL + + PP G PGP P GGP Sbjct: 179 ALQTSFKKPGSALPLQNPPLPPTFQPGAPPGPPPAGGP 216
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 29.3 bits (64), Expect = 7.2 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +1 Query: 286 HVQPPPGIAAGLNPGPIPFGGP 351 H+ PP G PGPI GGP Sbjct: 892 HLSGPPAFGPGPGPGPIHIGGP 913
>ROUGH_DROME (P10181) Homeobox protein rough| Length = 350 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 286 HVQPPPGIAAGLNPGPI-PFGGPSKQPRNPH 375 +V PPP IAAG P+ P P+ P +PH Sbjct: 142 YVSPPPAIAAGGAANPVLPHAFPAGFPSDPH 172
>Y2019_MYCBO (P0A5F8) Hypothetical protein Mb2019| Length = 317 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +1 Query: 187 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPP 300 +VV VDGS S A+ WA ++R + AL V+ V PP Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMR-NVALRVVQVVPP 46
>Y1996_MYCTU (P0A5F7) Hypothetical protein Rv1996/MT2052| Length = 317 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +1 Query: 187 VVVAVDGSEESMKALRWALDSLRLRPDGALVVLHVQPP 300 +VV VDGS S A+ WA ++R + AL V+ V PP Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMR-NVALRVVQVVPP 46
>MG101_CANGA (Q6FK91) Mitochondrial genome maintenance protein MGM101,| mitochondrial precursor Length = 244 Score = 28.9 bits (63), Expect = 9.3 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 528 SRIASVIRRWCDSMACVNAGTSATPEQP--APRPTEAAVS 415 SR + RRW ++A AGT T +P + +PTEAA++ Sbjct: 12 SRALFLARRWNSNIASGTAGTFQTTAKPLRSVKPTEAALA 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,700,267 Number of Sequences: 219361 Number of extensions: 682896 Number of successful extensions: 3432 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3417 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
