>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
 Frame = +1

Query: 121 NSPFDCLLIDLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTL 300
           N        D+D+ LY  +T I   + ++I  F                      +G  +
Sbjct: 52  NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 111

Query: 301 AGLIALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRA 462
            GL+   H V+  EY+  V   LP  D++  D  L   L  + Q  KI    LFTN+ + 
Sbjct: 112 RGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 170

Query: 463 HMRRSLERLGLDEALFDGV 519
           H  R L  LG+ + LFDG+
Sbjct: 171 HAIRCLRLLGIAD-LFDGL 188

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
 Frame = +1

Query: 148 DLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 327
           D+D+TLY  +T +   + +++  F                      +G ++ GLI     
Sbjct: 58  DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117

Query: 328 VHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 483
               +Y++++   LP  D +  D +L   L ++ ++K+       LFTNS + H  R ++
Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177

Query: 484 RLGLDEALFDGV 519
            LG+ + LFDG+
Sbjct: 178 ILGIAD-LFDGI 188

>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
 Frame = +1

Query: 139 LLIDLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 318
           +  DLD+ LYP +  I   +   I  F                      +G  + GL+ L
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66

Query: 319 GHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 489
            H++   +Y   V   LP + VI  D  L   L  + ++    +FTN+   H  R L+ L
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126

Query: 490 GLDEALFDGV 519
           G+++  FDG+
Sbjct: 127 GIEDC-FDGI 135

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 200  PSAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQE 78
            PSAG  P LPGYS SS       +G+ K   G+  AS++ +
Sbjct: 1797 PSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDK 1837

>RSC2_YEAST (Q06488) Chromatin structure remodeling complex protein RSC2|
           (Remodel the structure of chromatin complex subunit 2)
          Length = 889

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -2

Query: 236 PNLATRNSSMLRPSAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQETVD 69
           PNL  +   ++ P  GP+P  PGY    + +R +++   +A A    +S    + +
Sbjct: 119 PNLKEKYPQLVYPDLGPLPDEPGYEEFQQKLREKAEEVARANAARAESSSSMNSTE 174

>UVRB_HALSA (Q9HMT9) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 689

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -1

Query: 558 LAEEIRVHGLEAYDAVEEGLVEAQPLQRPPHVRAVRVGEQDLALGHALERGG 403
           +AE++  +  EA  AVE    E   L+R   VR +R+GE D+ +G  L R G
Sbjct: 470 MAEDLTEYLEEAGVAVEYMHDETDTLERHELVRGLRLGEYDVLVGINLLREG 521


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,719,997
Number of Sequences: 219361
Number of extensions: 837361
Number of successful extensions: 3867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3867
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)