Clone Name | bart12h02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SSM1_YEAST (P53078) Protein SSM1 | 40 | 0.003 | 2 | YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 i... | 40 | 0.006 | 3 | YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I | 40 | 0.006 | 4 | RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... | 34 | 0.33 | 5 | RSC2_YEAST (Q06488) Chromatin structure remodeling complex prote... | 33 | 0.73 | 6 | UVRB_HALSA (Q9HMT9) UvrABC system protein B (Protein uvrB) (Exci... | 30 | 6.1 |
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>SSM1_YEAST (P53078) Protein SSM1| Length = 280 Score = 40.4 bits (93), Expect = 0.003 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 6/139 (4%) Frame = +1 Query: 121 NSPFDCLLIDLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTL 300 N D+D+ LY +T I + ++I F +G + Sbjct: 52 NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 111 Query: 301 AGLIALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRA 462 GL+ H V+ EY+ V LP D++ D L L + Q KI LFTN+ + Sbjct: 112 RGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 170 Query: 463 HMRRSLERLGLDEALFDGV 519 H R L LG+ + LFDG+ Sbjct: 171 HAIRCLRLLGIAD-LFDGL 188
>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic| region Length = 321 Score = 39.7 bits (91), Expect = 0.006 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Frame = +1 Query: 148 DLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 327 D+D+TLY +T + + +++ F +G ++ GLI Sbjct: 58 DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117 Query: 328 VHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 483 +Y++++ LP D + D +L L ++ ++K+ LFTNS + H R ++ Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177 Query: 484 RLGLDEALFDGV 519 LG+ + LFDG+ Sbjct: 178 ILGIAD-LFDGI 188
>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I| Length = 226 Score = 39.7 bits (91), Expect = 0.006 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Frame = +1 Query: 139 LLIDLDDTLYPGNTGIGPALGRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 318 + DLD+ LYP + I + I F +G + GL+ L Sbjct: 8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66 Query: 319 GHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 489 H++ +Y V LP + VI D L L + ++ +FTN+ H R L+ L Sbjct: 67 HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126 Query: 490 GLDEALFDGV 519 G+++ FDG+ Sbjct: 127 GIEDC-FDGI 135
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -2 Query: 200 PSAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQE 78 PSAG P LPGYS SS +G+ K G+ AS++ + Sbjct: 1797 PSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDK 1837
>RSC2_YEAST (Q06488) Chromatin structure remodeling complex protein RSC2| (Remodel the structure of chromatin complex subunit 2) Length = 889 Score = 32.7 bits (73), Expect = 0.73 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = -2 Query: 236 PNLATRNSSMLRPSAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQETVD 69 PNL + ++ P GP+P PGY + +R +++ +A A +S + + Sbjct: 119 PNLKEKYPQLVYPDLGPLPDEPGYEEFQQKLREKAEEVARANAARAESSSSMNSTE 174
>UVRB_HALSA (Q9HMT9) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 689 Score = 29.6 bits (65), Expect = 6.1 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = -1 Query: 558 LAEEIRVHGLEAYDAVEEGLVEAQPLQRPPHVRAVRVGEQDLALGHALERGG 403 +AE++ + EA AVE E L+R VR +R+GE D+ +G L R G Sbjct: 470 MAEDLTEYLEEAGVAVEYMHDETDTLERHELVRGLRLGEYDVLVGINLLREG 521 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,719,997 Number of Sequences: 219361 Number of extensions: 837361 Number of successful extensions: 3867 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3867 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)