ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart12h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 Score = 357 bits (180), Expect = 3e-95 Identities = 372/436 (85%) Strand = Plus / Plus Query: 124 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 183 ||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | ||| Sbjct: 112 tcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgggc 171 Query: 184 attggcccggcgctggggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 243 || || | |||| | ||||||||||||||||||||| |||| ||| |||| || | Sbjct: 172 atcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtcacg 231 Query: 244 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 303 || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||||| Sbjct: 232 gcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcgcc 291 Query: 304 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 363 ||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||||| Sbjct: 292 ggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacggg 351 Query: 364 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagcatg 423 ||||||||||||||| |||||||||||||||||||||||||| | || | |||||| Sbjct: 352 aggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagcatc 411 Query: 424 ccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggag 483 || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| || Sbjct: 412 ccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcag 471 Query: 484 cggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccg 543 |||||| || ||||||||| | |||||||| |||||| |||||||||||||||||||| Sbjct: 472 cggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccct 531 Query: 544 aatctcttcggcgagg 559 | |||||||| |||| Sbjct: 532 cacctcttcggtgagg 547
>dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full insert sequence Length = 1147 Score = 357 bits (180), Expect = 3e-95 Identities = 372/436 (85%) Strand = Plus / Plus Query: 124 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 183 ||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | ||| Sbjct: 111 tcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgggc 170 Query: 184 attggcccggcgctggggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 243 || || | |||| | ||||||||||||||||||||| |||| ||| |||| || | Sbjct: 171 atcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtcacg 230 Query: 244 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 303 || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||||| Sbjct: 231 gcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcgcc 290 Query: 304 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 363 ||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||||| Sbjct: 291 ggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacggg 350 Query: 364 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagcatg 423 ||||||||||||||| |||||||||||||||||||||||||| | || | |||||| Sbjct: 351 aggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagcatc 410 Query: 424 ccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggag 483 || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| || Sbjct: 411 ccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcag 470 Query: 484 cggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccg 543 |||||| || ||||||||| | |||||||| |||||| |||||||||||||||||||| Sbjct: 471 cggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccct 530 Query: 544 aatctcttcggcgagg 559 | |||||||| |||| Sbjct: 531 cacctcttcggtgagg 546
>dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A11, full insert sequence Length = 1144 Score = 357 bits (180), Expect = 3e-95 Identities = 372/436 (85%) Strand = Plus / Plus Query: 124 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 183 ||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | ||| Sbjct: 112 tcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgggc 171 Query: 184 attggcccggcgctggggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 243 || || | |||| | ||||||||||||||||||||| |||| ||| |||| || | Sbjct: 172 atcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtcacg 231 Query: 244 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 303 || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||||| Sbjct: 232 gcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcgcc 291 Query: 304 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 363 ||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||||| Sbjct: 292 ggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacggg 351 Query: 364 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagcatg 423 ||||||||||||||| |||||||||||||||||||||||||| | || | |||||| Sbjct: 352 aggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagcatc 411 Query: 424 ccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggag 483 || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| || Sbjct: 412 ccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcag 471 Query: 484 cggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccg 543 |||||| || ||||||||| | |||||||| |||||| |||||||||||||||||||| Sbjct: 472 cggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccct 531 Query: 544 aatctcttcggcgagg 559 | |||||||| |||| Sbjct: 532 cacctcttcggtgagg 547
>dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D11, full insert sequence Length = 1112 Score = 357 bits (180), Expect = 3e-95 Identities = 372/436 (85%) Strand = Plus / Plus Query: 124 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 183 ||||| ||||||||| ||||| | |||||||||||||||||||||||||| | | | ||| Sbjct: 95 tcccctttcgactgcgtcctctttgacctcgacgacacgctgtacccgggaagcgcgggc 154 Query: 184 attggcccggcgctggggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 243 || || | |||| | ||||||||||||||||||||| |||| ||| |||| || | Sbjct: 155 atcgggctggcgacgaagcgcaacatcgacgagttcctcatggcacggtgcggcgtcacg 214 Query: 244 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 303 || || ||||||||||||||||| ||| |||||||||||| |||||||| | |||||| Sbjct: 215 gcggagcgggccgccgcgctccgcgtcgagctcttccgctcctacggcagctcgctcgcc 274 Query: 304 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 363 ||||||||||| |||||| | ||||||||||| || |||||||||||||||||||||||| Sbjct: 275 ggcctcatcgctctcggctatgacgtgcacccggatgagtaccacagctacgtgcacggg 334 Query: 364 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgcgctccagagcatg 423 ||||||||||||||| |||||||||||||||||||||||||| | || | |||||| Sbjct: 335 aggctgccctacgaccggatcgccgccgacccgcagctcgccggccttctgcggagcatc 394 Query: 424 ccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggag 483 || |||||||| || ||||||||||||||||| |||||||||||||||| | ||||| || Sbjct: 395 ccgcagcgcaaaattctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcag 454 Query: 484 cggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccg 543 |||||| || ||||||||| | |||||||| |||||| |||||||||||||||||||| Sbjct: 455 cggctgagcgtcgacgagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccct 514 Query: 544 aatctcttcggcgagg 559 | |||||||| |||| Sbjct: 515 cacctcttcggtgagg 530
>gb|AY108507.1| Zea mays PCO092437 mRNA sequence Length = 1277 Score = 355 bits (179), Expect = 1e-94 Identities = 373/435 (85%), Gaps = 2/435 (0%) Strand = Plus / Plus Query: 124 tcccccttcgactgcctcctcatcgacctcgacgacacgctgtacccgggcaacaccggc 183 ||||||||||||||| ||||| | |||||||||||||| |||||||||||| |||||||| Sbjct: 132 tcccccttcgactgcgtcctcctagacctcgacgacaccctgtacccgggcgacaccggc 191 Query: 184 attggcccggcgctggggcgcaacatcgacgagttccttgtggccaggttcggcctcgcc 243 || ||| |||| ||| |||||||||||||||||||||| ||||| | ||||| | | Sbjct: 192 atcggcgcggccctgaggcgcaacatcgacgagttcctccaggccaagctcggcgtgtcg 251 Query: 244 gccgacaaggccgccgcgctccgcgccgacctcttccgctcccacggcagcaccctcgcc 303 |||||| |||||||||| |||||||| ||||||||| | ||||||||| |||||||| Sbjct: 252 gccgacgaggccgccgccacgcgcgccgagctcttccgcgcgcacggcagctccctcgcc 311 Query: 304 ggcctcatcgcgctcggccacgacgtgcaccccgacgagtaccacagctacgtgcacggg 363 || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct: 312 gggctcatcgcgctcggctacgacgtgcacccggacgagtaccacagctacgtgcacggc 371 Query: 364 aggctgccctacgacgtgatcgccgccgacccgcagctcgccgccgc-gctccagagcat 422 ||||| || |||||| |||||| |||||||||||| | ||| || ||| |||||||| Sbjct: 372 aggctaccgtacgacaggatcgcgcgcgacccgcagct-ggcgcggctgctgcagagcat 430 Query: 423 gccccagcgcaagatcctgttcaccaactctgaccgcgcgcacatgaggaggtcgctgga 482 || |||||||| | |||||||||||||| ||||||||||||||| | || ||||||| Sbjct: 431 cccgcagcgcaaagtgctgttcaccaactcggaccgcgcgcacatggagcgggcgctgga 490 Query: 483 gcggctgggcctcgacgaggccctcttcgacggcgtcgtatgcttcgagaccatgaaccc 542 |||||||||| | ||||||||| |||||||| |||||| |||||||||||||||||||| Sbjct: 491 gcggctgggcgtggacgaggccgccttcgacgccgtcgtgtgcttcgagaccatgaaccc 550 Query: 543 gaatctcttcggcga 557 | | || |||||||| Sbjct: 551 gcacctgttcggcga 565
>emb|X82617.1|ZMSSIP Z.mays mRNA for sugar-starvation induced protein Length = 1022 Score = 208 bits (105), Expect = 1e-50 Identities = 208/241 (86%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 265 cgcgccgacctcttccgctcccacggcagcaccctcgccggcctcatcgcgctcggccac 324 |||||||| ||||||||| | ||||||||| |||||||||| ||||||||||||||| || Sbjct: 32 cgcgccgagctcttccgcgcgcacggcagctccctcgccgggctcatcgcgctcggctac 91 Query: 325 gacgtgcaccccgacgagtaccacagctacgtgcacgggaggctgccctacgacgtgatc 384 ||||||||||| |||||||||||||||||||||||||| ||||| || |||||| |||| Sbjct: 92 gacgtgcacccggacgagtaccacagctacgtgcacggcaggctaccgtacgacaggatc 151 Query: 385 gccgccgacccgcagctcgccgc-cgcgctccagagcatgccccagcgcaagatcctgtt 443 || |||||||||||| | ||| | ||| |||||||| || |||||||| | ||||| Sbjct: 152 gcgcgcgacccgcagctgggcgcgcctgctgcagagcatcccgcagcgcaaagtgctgtt 211 Query: 444 caccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgacgaggc 503 ||||||||| ||||||||||||||| | || ||||||||||||||||| | |||||||| Sbjct: 212 caccaactcggaccgcgcgcacatggagcgggcgctggagcggctgggcgtggacgaggc 271 Query: 504 c 504 | Sbjct: 272 c 272
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 125 bits (63), Expect = 2e-25 Identities = 102/115 (88%) Strand = Plus / Plus Query: 442 ttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgacgag 501 ||||||||||| ||||| |||||||||| | || || |||||||||||||| | |||||| Sbjct: 10172 ttcaccaactcggaccgggcgcacatgaagcgggcgttggagcggctgggcgtggacgag 10231 Query: 502 gccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcg 556 ||| ||||||||| |||||| ||||||||||||||||||||| | |||||||||| Sbjct: 10232 gccgtcttcgacgccgtcgtgtgcttcgagaccatgaacccgcacctcttcggcg 10286 Score = 123 bits (62), Expect = 7e-25 Identities = 140/166 (84%) Strand = Plus / Plus Query: 148 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctggggcgcaac 207 ||||| |||||||| ||||||||||||||||||||||| ||||| || ||| ||||||| Sbjct: 9499 gacctggacgacaccctgtacccgggcaacaccggcatcggccccgccctgaagcgcaac 9558 Query: 208 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 267 |||||||||||||| ||||| | ||||| || | || || ||||||||||| | ||| Sbjct: 9559 atcgacgagttcctgcaggccaagctcggcgtctcggcggagaaggccgccgccatgcgc 9618 Query: 268 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 313 | ||| ||||||||| | ||||||||| |||||||||| ||||||| Sbjct: 9619 gtcgagctcttccgcacgcacggcagctccctcgccggactcatcg 9664 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 348 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagct 401 ||||||||||||||| ||||| || |||||| ||||| |||||||||||||||| Sbjct: 9960 cagctacgtgcacggcaggctaccgtacgacatgatccccgccgacccgcagct 10013 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 313 gcgctcggccacgacgtgcaccccgacgagtaccacag 350 ||||||||| | ||||||||||| |||||||||||||| Sbjct: 9809 gcgctcggctatgacgtgcacccggacgagtaccacag 9846
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 439 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 498 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 96769 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 96828 Query: 499 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 558 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 96829 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 96888 Query: 559 g 559 | Sbjct: 96889 g 96889 Score = 107 bits (54), Expect = 4e-20 Identities = 138/166 (83%) Strand = Plus / Plus Query: 148 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctggggcgcaac 207 |||||||||||||||||||||||||| | | | ||||| || | |||| | ||||||| Sbjct: 96120 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 96179 Query: 208 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 267 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 96180 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 96239 Query: 268 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 313 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 96240 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 96285 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 348 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 96589 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 96647
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 439 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 498 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 27852639 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 27852698 Query: 499 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 558 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 27852699 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 27852758 Query: 559 g 559 | Sbjct: 27852759 g 27852759 Score = 107 bits (54), Expect = 4e-20 Identities = 138/166 (83%) Strand = Plus / Plus Query: 148 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctggggcgcaac 207 |||||||||||||||||||||||||| | | | ||||| || | |||| | ||||||| Sbjct: 27851990 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 27852049 Query: 208 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 267 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 27852050 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 27852109 Query: 268 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 313 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 27852110 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 27852155 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 348 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27852459 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 27852517
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 439 ctgttcaccaactctgaccgcgcgcacatgaggaggtcgctggagcggctgggcctcgac 498 ||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct: 27943963 ctgttcaccaactctgatcgcgcgcacatgaggaaggcgctgcagcggctgagcgtcgac 27944022 Query: 499 gaggccctcttcgacggcgtcgtatgcttcgagaccatgaacccgaatctcttcggcgag 558 |||| | |||||||| |||||| |||||||||||||||||||| | |||||||| ||| Sbjct: 27944023 gagggctgcttcgacgccgtcgtgtgcttcgagaccatgaaccctcacctcttcggtgag 27944082 Query: 559 g 559 | Sbjct: 27944083 g 27944083 Score = 107 bits (54), Expect = 4e-20 Identities = 138/166 (83%) Strand = Plus / Plus Query: 148 gacctcgacgacacgctgtacccgggcaacaccggcattggcccggcgctggggcgcaac 207 |||||||||||||||||||||||||| | | | ||||| || | |||| | ||||||| Sbjct: 27943314 gacctcgacgacacgctgtacccgggaagcgcgggcatcgggctggcgacgaagcgcaac 27943373 Query: 208 atcgacgagttccttgtggccaggttcggcctcgccgccgacaaggccgccgcgctccgc 267 |||||||||||||| |||| ||| |||| || | || || |||||||||||||||| Sbjct: 27943374 atcgacgagttcctcatggcacggtgcggcgtcacggcggagcgggccgccgcgctccgc 27943433 Query: 268 gccgacctcttccgctcccacggcagcaccctcgccggcctcatcg 313 | ||| |||||||||||| |||||||| | |||||||||||||||| Sbjct: 27943434 gtcgagctcttccgctcctacggcagctcgctcgccggcctcatcg 27943479 Score = 101 bits (51), Expect = 2e-18 Identities = 57/59 (96%) Strand = Plus / Plus Query: 348 cagctacgtgcacgggaggctgccctacgacgtgatcgccgccgacccgcagctcgccg 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 27943783 cagctacgtgcacgggaggctgccctacgaccggatcgccgccgacccgcagctcgccg 27943841
>gb|AY106832.1| Zea mays PCO074808 mRNA sequence Length = 1378 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 130 ttcgactgcctcctcatcgacctcgacgacacgctgta 167 ||||||||||| ||| |||||||||||||||| ||||| Sbjct: 208 ttcgactgcctgctcttcgacctcgacgacaccctgta 245
>gb|AF421538.2| Crypthecodinium cohnii BiP (BiP) mRNA, partial cds Length = 2238 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 498 cgaggccctcttcgacggcgtcg 520 ||||||||||||||||||||||| Sbjct: 987 cgaggccctcttcgacggcgtcg 1009
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 375 cgacgtgatcgccgccgacccgcagctcgccgcc 408 ||||||||||||| ||||||||||| || ||||| Sbjct: 1049004 cgacgtgatcgcccccgacccgcaggtcaccgcc 1049037
>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene cluster, partial sequence Length = 85915 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 ggccgccgcgctccgcgccgac 273 |||||||||||||||||||||| Sbjct: 74167 ggccgccgcgctccgcgccgac 74146
>ref|XM_450329.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1835 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 394 ccgcagctcgccgccgcgctcc 415 |||||||||||||||||||||| Sbjct: 1175 ccgcagctcgccgccgcgctcc 1154
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 cgccgccgacaaggccgccgcg 261 |||||||||||||||||||||| Sbjct: 1212760 cgccgccgacaaggccgccgcg 1212781
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 383 tcgccgccgacccgcagctcgc 404 |||||||||||||||||||||| Sbjct: 1712464 tcgccgccgacccgcagctcgc 1712485
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 146 tcgacctcgacgacacgctgtacccg 171 ||||||||||| |||||||||||||| Sbjct: 345714 tcgacctcgacaacacgctgtacccg 345689
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 cgccgccgacaaggccgccgcg 261 |||||||||||||||||||||| Sbjct: 2528780 cgccgccgacaaggccgccgcg 2528801
>gb|AE005815.1| Caulobacter crescentus CB15 section 141 of 359 of the complete genome Length = 9132 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 cgccgacaaggccgccgcgctc 264 |||||||||||||||||||||| Sbjct: 6957 cgccgacaaggccgccgcgctc 6978
>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence Length = 141874 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/41 (90%), Gaps = 2/41 (4%) Strand = Plus / Plus Query: 234 cggcctcgccgccg--acaaggccgccgcgctccgcgccga 272 |||||||||| ||| |||| |||||||||||||||||||| Sbjct: 61987 cggcctcgccaccggcacaaagccgccgcgctccgcgccga 62027
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 cgccgccgacaaggccgccgcg 261 |||||||||||||||||||||| Sbjct: 234077 cgccgccgacaaggccgccgcg 234056
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 394 ccgcagctcgccgccgcgctcc 415 |||||||||||||||||||||| Sbjct: 4174909 ccgcagctcgccgccgcgctcc 4174888 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 cgactgcctcctcatcgacc 151 |||||||||||||||||||| Sbjct: 929679 cgactgcctcctcatcgacc 929698
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 391 gacccgcagctcgccgccgcgctccagagc 420 |||||||||||| ||| ||||||||||||| Sbjct: 453633 gacccgcagctcaccgtcgcgctccagagc 453604
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 394 ccgcagctcgccgccgcgctcc 415 |||||||||||||||||||||| Sbjct: 158390 ccgcagctcgccgccgcgctcc 158369
>dbj|AK106263.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F09, full insert sequence Length = 2025 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 394 ccgcagctcgccgccgcgctcc 415 |||||||||||||||||||||| Sbjct: 357 ccgcagctcgccgccgcgctcc 378
>dbj|AK101561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050D17, full insert sequence Length = 1833 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 394 ccgcagctcgccgccgcgctcc 415 |||||||||||||||||||||| Sbjct: 1173 ccgcagctcgccgccgcgctcc 1152
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 296 ccctcgccggcctcatcgcgctcggc 321 ||||||||| |||||||||||||||| Sbjct: 348670 ccctcgccgtcctcatcgcgctcggc 348645
>ref|NM_188345.1| Oryza sativa (japonica cultivar-group), Ozsa8096 predicted mRNA Length = 642 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 252 ggccgccgcgctccgcgccgacctc 276 |||||||||||||||||||| |||| Sbjct: 3 ggccgccgcgctccgcgccgccctc 27
>ref|XM_847960.1| PREDICTED: Canis familiaris hypothetical protein LOC610450 (LOC610450), mRNA Length = 792 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 467 tgaggaggtcgctggagcggctggg 491 |||||||||||||||||||| |||| Sbjct: 620 tgaggaggtcgctggagcggatggg 644
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 170 cgggcaacaccggcattggcccggcgctg 198 |||||||||||||||| |||| ||||||| Sbjct: 2982660 cgggcaacaccggcatgggcctggcgctg 2982688
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gccgacaaggccgccgcgctc 264 ||||||||||||||||||||| Sbjct: 546993 gccgacaaggccgccgcgctc 547013
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 gcccggcgctggggcgcaaca 208 ||||||||||||||||||||| Sbjct: 897471 gcccggcgctggggcgcaaca 897491
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 tcctgctcctcgctcgcagct 99 ||||||||||||||||||||| Sbjct: 412919 tcctgctcctcgctcgcagct 412939
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 288 cggcagcaccctcgccggcctcatc 312 ||||||||||||||||| ||||||| Sbjct: 1113552 cggcagcaccctcgccgacctcatc 1113528 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 tcttcgacggcgtcgtatgcttcg 529 |||||||| ||||||||||||||| Sbjct: 133798 tcttcgaccgcgtcgtatgcttcg 133821
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 ggccgccgcgctccgcgccgacctc 276 |||||||||||||||||||| |||| Sbjct: 5796596 ggccgccgcgctccgcgccgccctc 5796572
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 gatcgccgccgacccgcagct 401 ||||||||||||||||||||| Sbjct: 4464931 gatcgccgccgacccgcagct 4464911 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cgacgaggccctcttcgacg 514 |||||||||||||||||||| Sbjct: 5355618 cgacgaggccctcttcgacg 5355599 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 agctcgccgccgcgctccag 417 |||||||||||||||||||| Sbjct: 3300726 agctcgccgccgcgctccag 3300745
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 cgccgacccgcagctcgccgc 407 ||||||||||||||||||||| Sbjct: 2642932 cgccgacccgcagctcgccgc 2642912 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 303 cggcctcatcgcgctcggccacgac 327 |||||||||||||||||||| |||| Sbjct: 1488396 cggcctcatcgcgctcggcctcgac 1488420 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 ggccgccgcgctccgcgccg 271 |||||||||||||||||||| Sbjct: 1518378 ggccgccgcgctccgcgccg 1518397
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 ggccgccgcgctccgcgccgacctc 276 |||||||||||||||||||| |||| Sbjct: 337 ggccgccgcgctccgcgccgccctc 313
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 ggccgccgcgctccgcgccgacctc 276 |||||||||||||||||||| |||| Sbjct: 121298 ggccgccgcgctccgcgccgccctc 121274
>ref|XM_319887.2| Anopheles gambiae str. PEST ENSANGP00000010636 (ENSANGG00000008147), partial mRNA Length = 2565 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 gctccgcgccgacctcttccg 281 ||||||||||||||||||||| Sbjct: 154 gctccgcgccgacctcttccg 134
>dbj|AK102840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109M13, full insert sequence Length = 1028 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 252 ggccgccgcgctccgcgccgacctc 276 |||||||||||||||||||| |||| Sbjct: 81 ggccgccgcgctccgcgccgccctc 105
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gccgacaaggccgccgcgctc 264 ||||||||||||||||||||| Sbjct: 268740 gccgacaaggccgccgcgctc 268760
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cgccgccgacaaggccgccgc 260 ||||||||||||||||||||| Sbjct: 28616 cgccgccgacaaggccgccgc 28636
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 gccgccgacccgcagctcgcc 405 ||||||||||||||||||||| Sbjct: 2744379 gccgccgacccgcagctcgcc 2744399
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 406 gccgcgctccagagcatgccccagc 430 ||||||||||||| ||||||||||| Sbjct: 3138366 gccgcgctccagaccatgccccagc 3138390
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ccgccgacaaggccgccgcg 261 |||||||||||||||||||| Sbjct: 44772 ccgccgacaaggccgccgcg 44753
>ref|XM_483291.1| Oryza sativa (japonica cultivar-group), mRNA Length = 998 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 253 gccgccgcgctccgcgccgacctcttccgctc 284 |||||||||| ||||||||||| | ||||||| Sbjct: 201 gccgccgcgcgccgcgccgaccgcctccgctc 232
>ref|XM_450001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cgactgcctcctcatcgacc 151 |||||||||||||||||||| Sbjct: 366 cgactgcctcctcatcgacc 347
>ref|XM_479452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 699 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgccgacccgcagctcgccgccgc 410 |||||||| ||||||||||||||| Sbjct: 282 cgccgacctgcagctcgccgccgc 305
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 atctcttcggcgagggcgcc 564 |||||||||||||||||||| Sbjct: 1845841 atctcttcggcgagggcgcc 1845822
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 ccggcctcatcgcgctcggc 321 |||||||||||||||||||| Sbjct: 3179358 ccggcctcatcgcgctcggc 3179339
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ccggcctcatcgcgctcggc 321 |||||||||||||||||||| Sbjct: 1621493 ccggcctcatcgcgctcggc 1621512
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 tgatcgccgccgacccgcagctcg 403 ||||| |||||||||||||||||| Sbjct: 927171 tgatcaccgccgacccgcagctcg 927194
>gb|AF441790.2| Synechococcus sp. PCC 7942 plasmid pANL, complete sequence Length = 46366 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgggcaacaccggcattggc 189 |||||||||||||||||||| Sbjct: 36335 cgggcaacaccggcattggc 36354
>gb|AF525691.2| Chlamydomonas reinhardtii RNA polymerase sigma factor (RpoD) gene, complete cds; nuclear gene for chloroplast product Length = 5013 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acggcagcaccctcgccggc 306 |||||||||||||||||||| Sbjct: 863 acggcagcaccctcgccggc 882
>ref|XM_001002302.1| PREDICTED: Mus musculus similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16) (LOC672880), mRNA Length = 2347 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 atcctgttcaccaactctga 455 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>ref|XM_355900.4| PREDICTED: Mus musculus solute carrier family 6, member 16 (LOC381884), mRNA Length = 2392 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 atcctgttcaccaactctga 455 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>ref|XM_914689.2| PREDICTED: Mus musculus solute carrier family 6, member 16 (LOC381884), mRNA Length = 2392 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 atcctgttcaccaactctga 455 |||||||||||||||||||| Sbjct: 185 atcctgttcaccaactctga 166
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gccgccgacaaggccgccgc 260 |||||||||||||||||||| Sbjct: 658117 gccgccgacaaggccgccgc 658098
>ref|XM_503785.1| Yarrowia lipolytica CLIB122, YALI0E10549g predicted mRNA Length = 1959 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 tccttgtggccaggttcggcctcg 241 |||||||||||| ||||||||||| Sbjct: 488 tccttgtggccatgttcggcctcg 465
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgacaaggccgccgcgc 262 |||||||||||||||||||| Sbjct: 2983778 cgccgacaaggccgccgcgc 2983759 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 acgacgtgatcgccgccgac 393 |||||||||||||||||||| Sbjct: 1749166 acgacgtgatcgccgccgac 1749185 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 tcgccggcctcatcgcgctcggcc 322 |||||||||| ||||||||||||| Sbjct: 1135100 tcgccggcctgatcgcgctcggcc 1135077 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ctcgccggcctcatcgcgctcggc 321 ||||||||||| |||||||||||| Sbjct: 379922 ctcgccggcctgatcgcgctcggc 379945
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ccgccgacaaggccgccgcg 261 |||||||||||||||||||| Sbjct: 72910 ccgccgacaaggccgccgcg 72929
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 234 cggcctcgccgccgacaaggccgccgcg 261 |||| |||||| |||||||||||||||| Sbjct: 550955 cggcttcgccgtcgacaaggccgccgcg 550928
>emb|X95444.1|SLRHOGENE S.lividans Rho gene Length = 2986 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gccgccgacaaggccgccgc 260 |||||||||||||||||||| Sbjct: 780 gccgccgacaaggccgccgc 799
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccgacaaggccgccgcgctc 264 |||||||||||||||||||| Sbjct: 202309 ccgacaaggccgccgcgctc 202328
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccgacaaggccgccgcgctc 264 |||||||||||||||||||| Sbjct: 205751 ccgacaaggccgccgcgctc 205770
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgacaaggccgccgcgctc 264 |||||||||||||||||||| Sbjct: 142093 ccgacaaggccgccgcgctc 142074
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ccggcctcatcgcgctcggc 321 |||||||||||||||||||| Sbjct: 1508641 ccggcctcatcgcgctcggc 1508660
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 cctcgccgccgacaaggccgccgc 260 ||||||||||| |||||||||||| Sbjct: 102290 cctcgccgccgccaaggccgccgc 102267
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gccgccgacaaggccgccgc 260 |||||||||||||||||||| Sbjct: 145654 gccgccgacaaggccgccgc 145673
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 cgacgaggccctcttcgacg 514 |||||||||||||||||||| Sbjct: 279842 cgacgaggccctcttcgacg 279861
>emb|AJ627180.1| Chlamydomonas reinhardtii sig1 gene for sigma-like transcription factor, exons 1-4 Length = 6047 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acggcagcaccctcgccggc 306 |||||||||||||||||||| Sbjct: 2127 acggcagcaccctcgccggc 2146
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cgccgacaaggccgccgcgctccg 266 ||||||||||| |||||||||||| Sbjct: 2571109 cgccgacaaggacgccgcgctccg 2571086
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 gcctcgccgccgacaaggccgccg 259 |||||||||||| ||||||||||| Sbjct: 1285189 gcctcgccgccgccaaggccgccg 1285166
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cgccgacaaggccgccgcgc 262 |||||||||||||||||||| Sbjct: 53531 cgccgacaaggccgccgcgc 53512
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcgccgccgacccgcagctc 402 |||||||||||||||||||| Sbjct: 5097835 tcgccgccgacccgcagctc 5097854 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 tcgccggcctcatcgcgctcggcc 322 |||||||||| ||||||||||||| Sbjct: 1022825 tcgccggcctgatcgcgctcggcc 1022802
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 387 cgccgacccgcagctcgccgccgcgctc 414 ||||||||||||| ||||||||| |||| Sbjct: 136368 cgccgacccgcagatcgccgccgggctc 136341
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 gccgccgcgctccgcgccgacctcttccgctc 284 |||||||||| ||||||||||| | ||||||| Sbjct: 25313276 gccgccgcgcgccgcgccgaccgcctccgctc 25313245
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgccgacccgcagctcgccgccgc 410 |||||||| ||||||||||||||| Sbjct: 28286414 cgccgacctgcagctcgccgccgc 28286437
>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0646B04 Length = 178896 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 cgactgcctcctcatcgacc 151 |||||||||||||||||||| Sbjct: 93806 cgactgcctcctcatcgacc 93825
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 gcgctccgcgccgacctcttccgc 282 ||||||||||||||||||| |||| Sbjct: 3109281 gcgctccgcgccgacctctcccgc 3109304
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgacaaggccgccgcgctc 264 |||||||||||||||||||| Sbjct: 3096663 ccgacaaggccgccgcgctc 3096644
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgccgacccgcagctcgccgccgc 410 |||||||| ||||||||||||||| Sbjct: 141959 cgccgacctgcagctcgccgccgc 141982
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgccgacccgcagctcgccgccgc 410 |||||||| ||||||||||||||| Sbjct: 11977 cgccgacctgcagctcgccgccgc 12000
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 gccgccgcgctccgcgccgacctcttccgctc 284 |||||||||| ||||||||||| | ||||||| Sbjct: 88461 gccgccgcgcgccgcgccgaccgcctccgctc 88430
>dbj|AK111180.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F12, full insert sequence Length = 3298 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cggccacgacgtgcaccccgacga 341 ||||||||||||||| |||||||| Sbjct: 1407 cggccacgacgtgcagcccgacga 1430
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgccggcctcatcgcgctcggcca 323 |||||||||||| ||||||||||| Sbjct: 33587 cgccggcctcatggcgctcggcca 33564
>dbj|AK069393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H05, full insert sequence Length = 998 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 253 gccgccgcgctccgcgccgacctcttccgctc 284 |||||||||| ||||||||||| | ||||||| Sbjct: 201 gccgccgcgcgccgcgccgaccgcctccgctc 232
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 300 cgccggcctcatcgcgctcggcca 323 |||||||||||| ||||||||||| Sbjct: 33587 cgccggcctcatggcgctcggcca 33564
>gb|AF176824.1|AF176824 Synechococcus PCC7942 plasmid pANL O-acetylserine(thiol)-lyase SrpD (srpD), gamma-glutamyltranspeptidase SrpE (srpE), alpha-helical coiled-coil protein SrpF (srpF), SrpJ (srpJ), ATP-binding protein of ABC transporter SrpK (srpK), membrane lipoprotein SrpL (srpL), and cytoplasmic membrane protein SrpM (srpM) genes, complete cds Length = 11239 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgggcaacaccggcattggc 189 |||||||||||||||||||| Sbjct: 317 cgggcaacaccggcattggc 336
>gb|AC109197.9| Mus musculus chromosome 1, clone RP23-309A8, complete sequence Length = 255342 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 477 gctggagcggctgggcctcgacga 500 ||||||| |||||||||||||||| Sbjct: 150407 gctggagaggctgggcctcgacga 150430
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 385 gccgccgacccgcagctcgccgccgcgc 412 ||||||| || ||||||||||||||||| Sbjct: 750874 gccgccgcccagcagctcgccgccgcgc 750901
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgctcggccacgacgtgca 332 |||||||||||||||||||| Sbjct: 1654206 gcgctcggccacgacgtgca 1654187
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence Length = 227073 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 atcctgttcaccaactctga 455 |||||||||||||||||||| Sbjct: 87112 atcctgttcaccaactctga 87131
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tccttgtggccaggttcggcctcg 241 |||||||||||| ||||||||||| Sbjct: 1310577 tccttgtggccatgttcggcctcg 1310600
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 tcgccgccgacccgcagctcgccg 406 ||||||||| |||||||||||||| Sbjct: 92502 tcgccgccggcccgcagctcgccg 92479
>gb|U75434.1|SAU75434 Streptomyces actuosus 23S rRNA methyltransferase (nshR) and NshA (nshA) genes, complete cds Length = 3444 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gatcgccgccgacccgcagc 400 |||||||||||||||||||| Sbjct: 2409 gatcgccgccgacccgcagc 2390
>gb|CP000101.1| Synechococcus elongatus PCC 7942 plasmid 1, complete sequence Length = 46366 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgggcaacaccggcattggc 189 |||||||||||||||||||| Sbjct: 14635 cgggcaacaccggcattggc 14654 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,375,589 Number of Sequences: 3902068 Number of extensions: 3375589 Number of successful extensions: 88795 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81251 Number of HSP's gapped (non-prelim): 7536 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
