ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart12g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472575.1| Oryza sativa (japonica cultivar-group), predic... 335 9e-89
2dbj|AK068521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 335 9e-89
3emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4,... 242 1e-60
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
5ref|NM_192705.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AK105656.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10ref|NM_201658.1| Arabidopsis thaliana unknown protein AT2G01170 ... 50 0.007
11ref|NM_126178.3| Arabidopsis thaliana amino acid permease AT2G01... 50 0.007
12gb|AY080610.1| Arabidopsis thaliana putative amino acid or GABA ... 50 0.007
13gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map... 50 0.007
14emb|BX820683.1|CNS0AACX Arabidopsis thaliana Full-length cDNA Co... 50 0.007
15emb|BX820338.1|CNS0AACS Arabidopsis thaliana Full-length cDNA Co... 50 0.007
16emb|BX820764.1|CNS0AA31 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
17emb|BX819028.1|CNS0AA2X Arabidopsis thaliana Full-length cDNA Co... 50 0.007
18gb|AF019637.1|AF019637 Arabidopsis thaliana putative amino acid ... 50 0.007
19ref|NM_192704.1| Oryza sativa (japonica cultivar-group), predic... 48 0.029
20emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 48 0.029
21dbj|AK071623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.029
22ref|NM_189753.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
23ref|NM_189752.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
24dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
25dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
26gb|AC005602.1|AC005602 Homo sapiens chromosome 19, cosmid F19843... 46 0.12
27emb|BX820771.1|CNS0AAD3 Arabidopsis thaliana Full-length cDNA Co... 44 0.46
28ref|NM_174412.2| Bos taurus proprotein convertase subtilisin/kex... 40 7.1
29ref|XM_589886.2| PREDICTED: Bos taurus similar to huntingtin int... 40 7.1
30gb|AE009411.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 7.1
31gb|AE008203.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 7.1
32emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 7.1
33gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, ... 40 7.1
34gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, com... 40 7.1
35gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 7.1
36ref|XM_393494.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 7.1
37emb|BX819189.1|CNS0AAEC Arabidopsis thaliana Full-length cDNA Co... 40 7.1
38dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.1
40gb|AF186405.1|AF186405 Bos taurus prohormone convertase 1 (PC1) ... 40 7.1
41gb|AE004815.1| Pseudomonas aeruginosa PAO1, section 376 of 529 o... 40 7.1
42dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.1
43dbj|AK120391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
44gb|BT020534.1| Arabidopsis thaliana At2g01170 gene, complete cds 40 7.1 
>ref|XM_472575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1593

 Score =  335 bits (169), Expect = 9e-89
 Identities = 223/241 (92%)
 Strand = Plus / Plus

                                                                       
Query: 288 gactccggggagaagcgcctcaacgagctcggctacaagcaggagctccggagggagatg 347
           |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 22  gactccggcgagaagcgcctcaacgagctcgggtacaagcaggagctccgcagggagatg 81

                                                                       
Query: 348 acgctgttcaagacgctggccatctctttctccacgatgacgctcttcacgggcatcacg 407
           || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 82  actctgttcaagacgctggccatctccttctcgacgatgacgctgttcaccgggatcacg 141

                                                                       
Query: 408 ccgctgtacggcagcagcctccagtacgccgggccggccagcctcgtgtggggctgggtc 467
           ||||||||||| |||||||| | |||| | ||||||||||||||||| ||||||||||||
Sbjct: 142 ccgctgtacgggagcagcctgcggtacacggggccggccagcctcgtctggggctgggtc 201

                                                                       
Query: 468 gtcgtctccttcttcacctggttcgtcggcatcgcgatggccgagatctgctcctccttc 527
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct: 202 gtcgtctccttcttcacctggttcgtcggcttcgccatggccgagatctgctcttccttc 261

            
Query: 528 c 528
           |
Sbjct: 262 c 262
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>dbj|AK068521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155C12, full
           insert sequence
          Length = 2009

 Score =  335 bits (169), Expect = 9e-89
 Identities = 223/241 (92%)
 Strand = Plus / Plus

                                                                       
Query: 288 gactccggggagaagcgcctcaacgagctcggctacaagcaggagctccggagggagatg 347
           |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 220 gactccggcgagaagcgcctcaacgagctcgggtacaagcaggagctccgcagggagatg 279

                                                                       
Query: 348 acgctgttcaagacgctggccatctctttctccacgatgacgctcttcacgggcatcacg 407
           || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 280 actctgttcaagacgctggccatctccttctcgacgatgacgctgttcaccgggatcacg 339

                                                                       
Query: 408 ccgctgtacggcagcagcctccagtacgccgggccggccagcctcgtgtggggctgggtc 467
           ||||||||||| |||||||| | |||| | ||||||||||||||||| ||||||||||||
Sbjct: 340 ccgctgtacgggagcagcctgcggtacacggggccggccagcctcgtctggggctgggtc 399

                                                                       
Query: 468 gtcgtctccttcttcacctggttcgtcggcatcgcgatggccgagatctgctcctccttc 527
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct: 400 gtcgtctccttcttcacctggttcgtcggcttcgccatggccgagatctgctcttccttc 459

            
Query: 528 c 528
           |
Sbjct: 460 c 460
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>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13,
             complete sequence
          Length = 127952

 Score =  242 bits (122), Expect = 1e-60
 Identities = 164/178 (92%)
 Strand = Plus / Plus

                                                                         
Query: 351   ctgttcaagacgctggccatctctttctccacgatgacgctcttcacgggcatcacgccg 410
             ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct: 81269 ctgttcaagacgctggccatctccttctcgacgatgacgctgttcaccgggatcacgccg 81328

                                                                         
Query: 411   ctgtacggcagcagcctccagtacgccgggccggccagcctcgtgtggggctgggtcgtc 470
             |||||||| |||||||| | |||| | ||||||||||||||||| |||||||||||||||
Sbjct: 81329 ctgtacgggagcagcctgcggtacacggggccggccagcctcgtctggggctgggtcgtc 81388

                                                                       
Query: 471   gtctccttcttcacctggttcgtcggcatcgcgatggccgagatctgctcctccttcc 528
             ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct: 81389 gtctccttcttcacctggttcgtcggcttcgccatggccgagatctgctcttccttcc 81446



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 57/60 (95%)
 Strand = Plus / Plus

                                                                         
Query: 288   gactccggggagaagcgcctcaacgagctcggctacaagcaggagctccggagggagatg 347
             |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 80886 gactccggcgagaagcgcctcaacgagctcgggtacaagcaggagctccgcagggagatg 80945
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  242 bits (122), Expect = 1e-60
 Identities = 164/178 (92%)
 Strand = Plus / Plus

                                                                            
Query: 351      ctgttcaagacgctggccatctctttctccacgatgacgctcttcacgggcatcacgccg 410
                ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct: 21646727 ctgttcaagacgctggccatctccttctcgacgatgacgctgttcaccgggatcacgccg 21646786

                                                                            
Query: 411      ctgtacggcagcagcctccagtacgccgggccggccagcctcgtgtggggctgggtcgtc 470
                |||||||| |||||||| | |||| | ||||||||||||||||| |||||||||||||||
Sbjct: 21646787 ctgtacgggagcagcctgcggtacacggggccggccagcctcgtctggggctgggtcgtc 21646846

                                                                          
Query: 471      gtctccttcttcacctggttcgtcggcatcgcgatggccgagatctgctcctccttcc 528
                ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct: 21646847 gtctccttcttcacctggttcgtcggcttcgccatggccgagatctgctcttccttcc 21646904



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 57/60 (95%)
 Strand = Plus / Plus

                                                                            
Query: 288      gactccggggagaagcgcctcaacgagctcggctacaagcaggagctccggagggagatg 347
                |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 21646344 gactccggcgagaagcgcctcaacgagctcgggtacaagcaggagctccgcagggagatg 21646403
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>ref|NM_192705.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2301

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 491 cgtcggcatcgcgatggccgagatctgctcctccttcc 528
           ||||||| || | |||||||||||||||||||||||||
Sbjct: 255 cgtcggcctctccatggccgagatctgctcctccttcc 292



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 312 gagctcggctacaagcaggagctc 335
           ||||||||||||||||||||||||
Sbjct: 76  gagctcggctacaagcaggagctc 99
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 491      cgtcggcatcgcgatggccgagatctgctcctccttcc 528
                ||||||| || | |||||||||||||||||||||||||
Sbjct: 23926269 cgtcggcctctccatggccgagatctgctcctccttcc 23926306



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 312      gagctcggctacaagcaggagctc 335
                ||||||||||||||||||||||||
Sbjct: 23925988 gagctcggctacaagcaggagctc 23926011



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 490      tcgtcggcatcgcgatggccgagatctgctcc 521
                |||||||| |||| ||||||||||||||||||
Sbjct: 23921178 tcgtcggcctcgccatggccgagatctgctcc 23921209



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 313      agctcggctacaagcaggagctc 335
                |||||||||||||||||||||||
Sbjct: 41546811 agctcggctacaagcaggagctc 41546789



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 313      agctcggctacaagcaggagctc 335
                |||||||||||||||||||||||
Sbjct: 41543638 agctcggctacaagcaggagctc 41543616



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 281     ggtggtggactccggggagaagcg 304
               |||||||| |||||||||||||||
Sbjct: 4453047 ggtggtggtctccggggagaagcg 4453070
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 491   cgtcggcatcgcgatggccgagatctgctcctccttcc 528
             ||||||| || | |||||||||||||||||||||||||
Sbjct: 72673 cgtcggcctctccatggccgagatctgctcctccttcc 72710



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 312   gagctcggctacaagcaggagctc 335
             ||||||||||||||||||||||||
Sbjct: 72392 gagctcggctacaagcaggagctc 72415



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 490   tcgtcggcatcgcgatggccgagatctgctcc 521
             |||||||| |||| ||||||||||||||||||
Sbjct: 67582 tcgtcggcctcgccatggccgagatctgctcc 67613
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 491   cgtcggcatcgcgatggccgagatctgctcctccttcc 528
             ||||||| || | |||||||||||||||||||||||||
Sbjct: 40791 cgtcggcctctccatggccgagatctgctcctccttcc 40828



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 312   gagctcggctacaagcaggagctc 335
             ||||||||||||||||||||||||
Sbjct: 40510 gagctcggctacaagcaggagctc 40533



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 490   tcgtcggcatcgcgatggccgagatctgctcc 521
             |||||||| |||| ||||||||||||||||||
Sbjct: 35700 tcgtcggcctcgccatggccgagatctgctcc 35731
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>dbj|AK105656.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G07, full
           insert sequence
          Length = 1999

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 491 cgtcggcatcgcgatggccgagatctgctcctccttcc 528
           ||||||| || | |||||||||||||||||||||||||
Sbjct: 366 cgtcggcctctccatggccgagatctgctcctccttcc 403



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 312 gagctcggctacaagcaggagctc 335
           ||||||||||||||||||||||||
Sbjct: 187 gagctcggctacaagcaggagctc 210
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>ref|NM_201658.1| Arabidopsis thaliana unknown protein AT2G01170 transcript variant
           AT2G01170.2 mRNA, complete cds
          Length = 1825

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 108 cgcctcaaggagctcggctacaagcaagagctc 140



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 377 atggccgagatctgctcctc 396
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>ref|NM_126178.3| Arabidopsis thaliana amino acid permease AT2G01170 transcript
           variant AT2G01170.1 mRNA, complete cds
          Length = 1808

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 142 cgcctcaaggagctcggctacaagcaagagctc 174



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 343 atggccgagatctgctcctc 362
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>gb|AY080610.1| Arabidopsis thaliana putative amino acid or GABA permease
           (At2g01170) mRNA, complete cds
          Length = 1735

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 141 cgcctcaaggagctcggctacaagcaagagctc 173



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 342 atggccgagatctgctcctc 361
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>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete
             sequence
          Length = 94029

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 303   cgcctcaacgagctcggctacaagcaggagctc 335
             |||||||| ||||||||||||||||| ||||||
Sbjct: 14004 cgcctcaaggagctcggctacaagcaagagctc 13972



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 504   atggccgagatctgctcctc 523
             ||||||||||||||||||||
Sbjct: 13735 atggccgagatctgctcctc 13716
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>emb|BX820683.1|CNS0AACX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH59ZG01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1642

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 108 cgcctcaaggagctcggctacaagcaagagctc 140



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 309 atggccgagatctgctcctc 328
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>emb|BX820338.1|CNS0AACS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH24ZB05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1757

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 92  cgcctcaaggagctcggctacaagcaagagctc 124



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 293 atggccgagatctgctcctc 312
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>emb|BX820764.1|CNS0AA31 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH67ZF06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1669

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 105 cgcctcaaggagctcggctacaagcaagagctc 137



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 306 atggccgagatctgctcctc 325
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>emb|BX819028.1|CNS0AA2X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB39ZA03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1737

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 87  cgcctcaaggagctcggctacaagcaagagctc 119



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 288 atggccgagatctgctcctc 307
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>gb|AF019637.1|AF019637 Arabidopsis thaliana putative amino acid or GABA permease mRNA,
           complete cds
          Length = 1726

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 303 cgcctcaacgagctcggctacaagcaggagctc 335
           |||||||| ||||||||||||||||| ||||||
Sbjct: 86  cgcctcaaggagctcggctacaagcaagagctc 118



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 287 atggccgagatctgctcctc 306
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>ref|NM_192704.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 414

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 490 tcgtcggcatcgcgatggccgagatctgctcc 521
           |||||||| |||| ||||||||||||||||||
Sbjct: 287 tcgtcggcctcgccatggccgagatctgctcc 318
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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 489    ttcgtcggcatcgcgatggccgagatctgctc 520
              ||||||||| | ||||||||||||||||||||
Sbjct: 269775 ttcgtcggcctggcgatggccgagatctgctc 269806
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>dbj|AK071623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104K01, full
           insert sequence
          Length = 2005

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 490 tcgtcggcatcgcgatggccgagatctgctcc 521
           |||||||| |||| ||||||||||||||||||
Sbjct: 369 tcgtcggcctcgccatggccgagatctgctcc 400
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>ref|NM_189753.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1599

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 313 agctcggctacaagcaggagctc 335
           |||||||||||||||||||||||
Sbjct: 53  agctcggctacaagcaggagctc 75
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>ref|NM_189752.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 313 agctcggctacaagcaggagctc 335
           |||||||||||||||||||||||
Sbjct: 71  agctcggctacaagcaggagctc 93
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>dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0614D08
          Length = 147548

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 313    agctcggctacaagcaggagctc 335
              |||||||||||||||||||||||
Sbjct: 103104 agctcggctacaagcaggagctc 103082



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 313   agctcggctacaagcaggagctc 335
             |||||||||||||||||||||||
Sbjct: 99931 agctcggctacaagcaggagctc 99909
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>dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0660F12
          Length = 147203

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 313    agctcggctacaagcaggagctc 335
              |||||||||||||||||||||||
Sbjct: 115010 agctcggctacaagcaggagctc 114988



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 313    agctcggctacaagcaggagctc 335
              |||||||||||||||||||||||
Sbjct: 111837 agctcggctacaagcaggagctc 111815
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>gb|AC005602.1|AC005602 Homo sapiens chromosome 19, cosmid F19843, complete sequence
          Length = 39951

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 119   ccgctctcgctccctcccccgcc 141
             |||||||||||||||||||||||
Sbjct: 20853 ccgctctcgctccctcccccgcc 20831
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>emb|BX820771.1|CNS0AAD3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH68ZD08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1745

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 303 cgcctcaacgagctcggctacaagca 328
           |||||||| |||||||||||||||||
Sbjct: 100 cgcctcaaggagctcggctacaagca 125



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 301 atggccgagatctgctcctc 320
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>ref|NM_174412.2| Bos taurus proprotein convertase subtilisin/kexin type 1 (PCSK1),
            mRNA
          Length = 2694

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  aggtggtggactccggggag 299
            ||||||||||||||||||||
Sbjct: 1951 aggtggtggactccggggag 1970
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>ref|XM_589886.2| PREDICTED: Bos taurus similar to huntingtin interacting protein B
            isoform 2 (LOC539860), mRNA
          Length = 5355

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 508  ccgagatctgctcctccttc 527
            ||||||||||||||||||||
Sbjct: 1176 ccgagatctgctcctccttc 1157
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>gb|AE009411.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 181 of
            187 of the complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 497  catcgcgatggccgagatct 516
            ||||||||||||||||||||
Sbjct: 2898 catcgcgatggccgagatct 2917
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>gb|AE008203.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 7 of
            187 of the complete sequence
          Length = 13386

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  catcgcgatggccgagatct 516
            ||||||||||||||||||||
Sbjct: 9559 catcgcgatggccgagatct 9540
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    ggcggcggggacgggcgtcgccat 268
              |||||||| |||||||||||||||
Sbjct: 957531 ggcggcggagacgggcgtcgccat 957554
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>gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, complete sequence
          Length = 187718

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   ccctcccccgccgcacccttcccc 153
             |||||||||||||||||| |||||
Sbjct: 48522 ccctcccccgccgcacccctcccc 48545
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>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence
          Length = 166869

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   ccctcccccgccgcacccttcccc 153
             |||||||||||||||||| |||||
Sbjct: 66949 ccctcccccgccgcacccctcccc 66972
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     gagaggacggacttttgccg 86
              ||||||||||||||||||||
Sbjct: 120679 gagaggacggacttttgccg 120660
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>ref|XM_393494.2| PREDICTED: Apis mellifera similar to ENSANGP00000017576
           (LOC410006), mRNA
          Length = 2139

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 ttcacgggcatcacgccgct 412
           ||||||||||||||||||||
Sbjct: 728 ttcacgggcatcacgccgct 709
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>emb|BX819189.1|CNS0AAEC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB54ZH08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1359

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 150 atggccgagatctgctcctc 169
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>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0489A01
          Length = 137174

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    ggtggtggactccggggagaagcg 304
              |||||||| |||||||||||||||
Sbjct: 113129 ggtggtggtctccggggagaagcg 113152
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 301     agcgcctcaacgagctcggctaca 324
               ||||||||||||||| ||||||||
Sbjct: 5126952 agcgcctcaacgagcacggctaca 5126929
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>gb|AF186405.1|AF186405 Bos taurus prohormone convertase 1 (PC1) mRNA, complete cds
          Length = 2694

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  aggtggtggactccggggag 299
            ||||||||||||||||||||
Sbjct: 1951 aggtggtggactccggggag 1970
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>gb|AE004815.1| Pseudomonas aeruginosa PAO1, section 376 of 529 of the complete
            genome
          Length = 10254

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  gacgggcgtcgccatggccg 273
            ||||||||||||||||||||
Sbjct: 2616 gacgggcgtcgccatggccg 2635
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 428     ccagtacgccgggccggcca 447
               ||||||||||||||||||||
Sbjct: 1780908 ccagtacgccgggccggcca 1780889
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>dbj|AK120391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K17, full
            insert sequence
          Length = 4154

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 281  ggtggtggactccggggagaagcg 304
            |||||||| |||||||||||||||
Sbjct: 2387 ggtggtggtctccggggagaagcg 2364
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>gb|BT020534.1| Arabidopsis thaliana At2g01170 gene, complete cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 atggccgagatctgctcctc 523
           ||||||||||||||||||||
Sbjct: 55  atggccgagatctgctcctc 74


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,681,322
Number of Sequences: 3902068
Number of extensions: 3681322
Number of successful extensions: 72949
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72481
Number of HSP's gapped (non-prelim): 466
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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