>DDX17_HUMAN (Q92841) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)|
           (DEAD box protein 17) (RNA-dependent helicase p72) (DEAD
           box protein p72)
          Length = 650

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 27/66 (40%), Positives = 30/66 (45%)
 Frame = +1

Query: 190 GRAADPSSYRDRRSEGAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVPAAA 369
           G   D    RDR   GA GGG       G P         +L  LP+FEKNFYVE P  A
Sbjct: 4   GGFGDRDRDRDRGGFGARGGGGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVA 63

Query: 370 GMTAEE 387
            +T  E
Sbjct: 64  RLTPYE 69

>DDX5_HUMAN (P17844) Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-)|
           (DEAD box protein 5) (RNA helicase p68)
          Length = 614

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 208 SSYRDRRSEGAFG----GGTRAFAPSGR----PDXXXXXXXXELDGLPRFEKNFYVEVPA 363
           SS RDR  +  FG    GG+RA   SG+    P          LD LP+FEKNFY E P 
Sbjct: 5   SSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64

Query: 364 AAGMTAEE 387
            A  TA+E
Sbjct: 65  LARRTAQE 72

>DDX5_MOUSE (Q61656) Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-)|
           (DEAD box protein 5) (RNA helicase p68) (DEAD box RNA
           helicase DEAD1) (mDEAD1)
          Length = 614

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 29/68 (42%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +1

Query: 208 SSYRDRRSEGAFG----GGTRAFAPSGR----PDXXXXXXXXELDGLPRFEKNFYVEVPA 363
           SS RDR  +  FG    GG+R    SG+    P          LD LP+FEKNFY E P 
Sbjct: 5   SSDRDRGRDRGFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQEHPD 64

Query: 364 AAGMTAEE 387
            A  TA+E
Sbjct: 65  LARRTAQE 72

>DDX17_MOUSE (Q501J6) Probable ATP-dependent RNA helicase DDX17 (EC 3.6.1.-)|
           (DEAD box protein 17)
          Length = 650

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 26/66 (39%), Positives = 29/66 (43%)
 Frame = +1

Query: 190 GRAADPSSYRDRRSEGAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVPAAA 369
           G   D    RDR   GA GG        G P         +L  LP+FEKNFYVE P  A
Sbjct: 4   GGFGDRDRDRDRGGFGARGGSGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVA 63

Query: 370 GMTAEE 387
            +T  E
Sbjct: 64  RLTPYE 69

>DBP2_CANGA (Q6FLF3) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 544

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = +1

Query: 190 GRAADPSSYRDRRSEGAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVE 354
           GR++D + Y   R++G   GG R     G  +        EL  LP FEKNFYVE
Sbjct: 23  GRSSDRNDYNRDRNQGYSHGGLRGRHDDGPRELIKPDWESELPNLPPFEKNFYVE 77

>DBP2_YEAST (P24783) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-) (DEAD box|
           protein 2) (p68-like protein)
          Length = 546

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 190 GRAADPSSYRDRRSEGAFGGGTRAFAPSGRP-DXXXXXXXXELDGLPRFEKNFYVE 354
           GR +D +SY DR   G + GG    +   +P +        EL  LP FEKNFYVE
Sbjct: 25  GRNSDRNSYNDRPQGGNYRGGFGGRSNYNQPQELIKPNWDEELPKLPTFEKNFYVE 80

>DBP2_ASHGO (Q755N4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 557

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
 Frame = +1

Query: 178 SRFDGRAADPSSYR--DRRSEGAFG---GGTRAFAPSGRPDXXXXXXXX----ELDGLPR 330
           S F GR  D    R  DR S G  G   GG   FA  GR              +++ LP+
Sbjct: 14  SNFGGRDGDHRGQRPSDRNSYGRDGFGRGGRGGFAGRGRGRSDDRLELTKPDWDVESLPK 73

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           FEKNFYVE      M+ +E
Sbjct: 74  FEKNFYVEHEDVQKMSTDE 92

>DBP2_CANAL (Q59LU0) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 562

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 184 FDGRAADPSSYRDRRSEGAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVPA 363
           + G   D   YR  R  G   GG R    +  P         +L+ LP+FEKNFY E P 
Sbjct: 41  YGGGDRDQGGYRGGRFSGGGRGGGRF---NDAPRQELTAPQWDLEQLPKFEKNFYSEHPD 97

Query: 364 AA 369
            A
Sbjct: 98  VA 99

>DBP2_KLULA (Q6CIV2) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 554

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 193 RAADPSSYR---DRRSEGAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVPA 363
           R +D +SY    D R   +FG G    +   R D        EL  LP FEKNFY E P 
Sbjct: 27  RGSDRNSYNRGNDFRGGRSFGRGP---SRDTRVDLVAPNWDEELPNLPVFEKNFYQEHPD 83

Query: 364 AAGMTAEE 387
            A M+  E
Sbjct: 84  VAQMSESE 91

>DBP2_YARLI (Q6C4D4) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 552

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 241 FGGGTRAFAPSGRPDXXXXXXXXE---LDGLPRFEKNFYVEVPAAAGMTAEE 387
           FGG    +   G  D        +   L+ LP+FEKNFY E PA    T EE
Sbjct: 43  FGGDRGGYGGGGYQDNDFGNLPKQDWDLEKLPQFEKNFYKEDPAVTERTDEE 94

>DBP2_DEBHA (Q6BY27) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 536

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 208 SSYRDRRSEGAFGGGTRAFAP--SGRPDXXXXXXXXE--LDGLPRFEKNFYVEVPAAAGM 375
           +SY      G  GGG   F     GR D        E  +D LP+FEKNFY E P     
Sbjct: 20  NSYGGGGYGGGRGGGRGGFGGRGGGRYDERVELNTPEWDIDSLPKFEKNFYNEHPDVTAR 79

Query: 376 TAEE 387
           + ++
Sbjct: 80  SVQD 83

>DBP2_ASPFU (Q4X195) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 547

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 310 ELDGLPRFEKNFYVEVPAAAGMTAEE 387
           +LD LP+FEK+FY E P  A  +  E
Sbjct: 74  DLDSLPKFEKSFYKEHPDVAARSERE 99

>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           F KNFYVEVP  A M+ EE
Sbjct: 299 FRKNFYVEVPELARMSPEE 317

>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           F KNFYVEVP  A M+ EE
Sbjct: 331 FRKNFYVEVPELAKMSQEE 349

>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           F KNFYVEVP  A M+ EE
Sbjct: 331 FRKNFYVEVPELAKMSQEE 349

>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           F KNFYVEVP  A M+ EE
Sbjct: 331 FRKNFYVEVPELAKMSQEE 349

>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 331 FEKNFYVEVPAAAGMTAEE 387
           F KNFYVEVP  A M+ EE
Sbjct: 331 FRKNFYVEVPELAKMSQEE 349

>DBP2_ASPOR (Q2U070) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 554

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 310 ELDGLPRFEKNFYVEVPAAAGMTAEE 387
           +LD LP+FEK+FY E P  A  +  +
Sbjct: 83  DLDSLPKFEKSFYKEHPDVANRSQRD 108

>DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)|
          Length = 562

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
 Frame = +1

Query: 235 GAFGGGTRAFAPSGRPDXXXXXXXX------ELDGLPRFEKNFYVEVPAAAGMTAEE 387
           G +GGG   +   G  D              ++  LP+FEK+FY E P+ A  +  E
Sbjct: 56  GGYGGG--GYGGGGGGDRMSALGAGLQKQNWDMSALPKFEKSFYQEHPSVANRSPAE 110

>DBP2_EMENI (Q5B0J9) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 563

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +1

Query: 235 GAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVPAAAGMTAEE 387
           GA  GG R     G           +LD LP+FEK+FY E P     +  E
Sbjct: 72  GAGAGGDRM----GNLGSGLKKQDWDLDTLPKFEKSFYKEHPDVTARSQRE 118

>VASA_DROME (P09052) ATP-dependent RNA helicase vasa (EC 3.6.1.-) (Antigen|
           Mab46F11)
          Length = 661

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 177 HGGRRRRQLGFSGGRWGARLRRGCAEAVEGSIRRAERG 64
           HGGRR  +  F GG  G R  +G +   +G  R  + G
Sbjct: 83  HGGRREGERDFRGGEGGFRGGQGGSRGGQGGSRGGQGG 120

>HSP1_CHRPI (Q7LZB2) Sperm protamine P1-type (Protamine I-1)|
          Length = 58

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -1

Query: 168 RRRRQLGFSGGRWGARLRRGCAEAVEGSIRRAERG 64
           RRRR+ G  GGR G R RR       G  RR  RG
Sbjct: 14  RRRRRRGGRGGRRGRRRRR------HGQRRRGRRG 42

>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 281 GLPDGANALVPPPKAPSLR 225
           GL +GA AL PPP  P ++
Sbjct: 408 GLAEGAGALAPPPPPPQIK 426

>DBP2_GIBZE (Q4IF76) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 555

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 235 GAFGGGTRAFAPSGRPDXXXXXXXXELDGLPRFEKNFYVEVP 360
           G FGGG       G           +++ LP+FEK+FY E P
Sbjct: 63  GGFGGGAGGDR-MGALGSGLKNQEWDINSLPKFEKSFYKEHP 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,379,028
Number of Sequences: 219361
Number of extensions: 423042
Number of successful extensions: 1047
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)