ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12f09 |
|---|---|
| Clone Library Name | barley_pub |
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 37.4 bits (85), Expect = 0.028 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 513 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 514 DIDYLIDSDGRK 549 +I Y + S G++ Sbjct: 59 EIKYSLKSAGKE 70
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 37.0 bits (84), Expect = 0.037 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 513 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 514 DIDYLIDSDGR 546 +I Y S GR Sbjct: 59 EISYNFRSAGR 69
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.048 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 484 NPNPVPIPLVDIDYL 528 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 36.6 bits (83), Expect = 0.048 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 513 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 514 DIDYLIDSDGR 546 +I Y + S GR Sbjct: 59 EIKYTLKSAGR 69
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 33.9 bits (76), Expect = 0.31 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 513 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 514 DIDYLIDSDGRK 549 +I + S GR+ Sbjct: 59 EISFTFHSAGRE 70
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.69 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 513 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 514 D 516 + Sbjct: 90 N 90
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 234 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 234 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 234 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +1 Query: 334 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 495 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 496 VP 501 +P Sbjct: 221 IP 222
>YG3A_YEAST (P53278) Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic| region Length = 816 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Frame = +1 Query: 166 SSDLASQPAAMSSSSDNPNEVTDRGLFSSKSNKEDADAXXXXXXXXXXXXXXXXX----- 330 SS ++ ++ SSSS + + +D G +S + E +A Sbjct: 164 SSSTSTSSSSSSSSSSSSSSSSDEGDVTSTTTSEATEATADTATTTTTTTSTSTTSTSTT 223 Query: 331 -----FIDKVKDFIHDIGEKIEEAVGFGKPSADVARIHV 432 D+ + +K+ E+ GK +AD A+I+V Sbjct: 224 NAVENSADEATSVEEEHEDKVSESTSIGKGTADSAQINV 262
>ATG15_DEBHA (Q6BLM0) Putative lipase ATG15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 615 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/59 (30%), Positives = 23/59 (38%) Frame = +3 Query: 3 PAPTSATRSARDLHSLRPAGSPSHPQSIAIPSCLISFDSRISTFHLRRPGSEASKLRSC 179 P P S RS+ H P S S PSC SF S +F + P + + C Sbjct: 533 PKPPSTVRSSNMPHEQSPNASRSLSSLCTEPSCTSSFQSVSPSFSSQLPSHPSQNPQRC 591
>GLTR_ARATH (Q9FWA4) Probable glycosyltransferase At3g02350 (EC 2.4.1.-)| Length = 561 Score = 30.0 bits (66), Expect = 4.5 Identities = 28/113 (24%), Positives = 44/113 (38%) Frame = +1 Query: 151 DLKQASSDLASQPAAMSSSSDNPNEVTDRGLFSSKSNKEDADAXXXXXXXXXXXXXXXXX 330 DL SDL S+P S+ SDN N + + + +D Sbjct: 120 DLAINFSDLQSKPGLKSAVSDNGNALEEDSFRQLEKEVKDKVKTARMMIVESKESYDTQL 179 Query: 331 FIDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNP 489 I K+KD I + E++ +A G ++ ++ VP A +V I NP Sbjct: 180 KIQKLKDTIFAVQEQLTKAKKNGAVASLISAKSVPKSLHCLAMRLVGERISNP 232
>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52| Length = 435 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +2 Query: 23 TLRTRSPLAPSSRIPFPSSVHRHPLLFDFI*FPHLHFPSPPAGI*SKQAPILPASQR 193 TL R L+ +P +S + P + + P LHFP P A P +PAS+R Sbjct: 368 TLAARPALSAPQNLPTNTSSIQRPTMIEL---PKLHFPQPTA----VPLPNVPASRR 417
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 189 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 85 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4| (Immediate-early protein IE175) Length = 1415 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = +3 Query: 3 PAPTSATRSARDLHSLRPAGSPSHPQS----IAIPSCLISFDSRISTFHLRR-PGSEASK 167 P TS+ RS S RP G + P + I+ P S + + H+ R P S +S Sbjct: 110 PHTTSSPRS-----SPRPRGPETSPSNEHIIISPPRNPPSNTTHRNVGHVSRSPSSSSSS 164 Query: 168 LRSCQPASGHVFLVGQPQRSHRPRP 242 S P+S + ++ P S P P Sbjct: 165 SSSSSPSSSSLIVLSSPSSSRSPSP 189
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 189 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 85 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>BXA1_SAMCY (P33718) Bombyxin A-1 homolog precursor [Contains: Bombyxin A-1| homolog B chain; Bombyxin A-1 homolog A chain] Length = 99 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 93 GWRWTEDGKGIRLDGASGDR 34 GWRW E + +LDGA G R Sbjct: 59 GWRWLEPQRARQLDGARGKR 78
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQP 189 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQP 189 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 10.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 121 ASPLSISAGRDLKQASSDLASQP 189 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,176,912 Number of Sequences: 219361 Number of extensions: 994376 Number of successful extensions: 4130 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4124 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
