>YPT2_ECOLI (Q99390) Hypothetical 31.7 kDa protein in traX-finO intergenic|
           region (ORFC)
          Length = 286

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 307 RLSDGRHLAYHESGVPREQAKHKIVFV-HGFDSCRYDALRVSPELAQELGIYIVSFDRPG 483
           +LS+G  L +    VP    KH ++ + HGF   R   L        E G   ++FD  G
Sbjct: 7   KLSEGIALTFR---VPEGNIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRG 63

Query: 484 YGESDPHPAR 513
           +GESD    R
Sbjct: 64  FGESDGERGR 73

>YPT1_ECOLI (P29368) Hypothetical 31.7 kDa protein in traX-finO intergenic|
           region
          Length = 286

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 307 RLSDGRHLAYHESGVPREQAKHKIVFV-HGFDSCRYDALRVSPELAQELGIYIVSFDRPG 483
           +LS+G  L +    VP    KH ++ + HGF   R   L        E G   ++FD  G
Sbjct: 7   KLSEGIALTFR---VPEGNIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRG 63

Query: 484 YGESDPHPAR 513
           +GESD    R
Sbjct: 64  FGESDGERGR 73

>PIP_LACHE (P52278) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 294

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 349 VPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFDRPGYGES---DPHP 507
           V     K  +V +HG     ++   V  ELAQ+ G  I+ +D+ G GES   D HP
Sbjct: 20  VGERSEKPPLVLLHGGPGSSHNYFEVLDELAQKDGRRIIMYDQLGCGESSIPDDHP 75

>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 606

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -2

Query: 356 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 261
           LG P SW   CLP L L+LG         VT   PGDP +
Sbjct: 4   LGYPRSWSCHCLPVLILLLGIGHGPWVEGVTHYKPGDPVI 43

>THIC_COREF (Q8FPT3) Thiamine biosynthesis protein thiC|
          Length = 580

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 328 LAYHESGVPREQAKHKIVFVHGFDSC--RYDALRVSPELAQELGIYIVSFDRPGYGESD 498
           +AYH+  +P E AK      H    C  ++ ++R+S ++    G  I     PG G SD
Sbjct: 504 IAYHDETLPAEPAKT----AHFCSMCGPKFCSMRISQDIRDMFGEQIAELGMPGVGASD 558

>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor|
          Length = 589

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
 Frame = -2

Query: 356 LGTPDSW*AKCLPSLSLILG--------AVTGGPPGDPQV 261
           LG P SW   CLP L L+LG         VT   PGDP +
Sbjct: 4   LGHPRSWSCHCLPVLILLLGIGHGPRVEGVTHYKPGDPVI 43

>DEH1_MORSB (Q01398) Haloacetate dehalogenase H-1 (EC 3.8.1.3)|
          Length = 294

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +1

Query: 316 DGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFDRPGYGES 495
           DG  +AY  SG         ++ +HGF   R    RV+P+LA+     +V  D  GYG+S
Sbjct: 14  DGVDIAYTVSG-----EGPPVLMLHGFPQNRAMWARVAPQLAEH--HTVVCADLRGYGDS 66

Query: 496 D 498
           D
Sbjct: 67  D 67

>PIP_ARATH (P93732) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 329

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 286 PVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFD---SCRYDALRVSPELAQELGI 456
           P ++  +++SD   L + +SG P     H +VF+HG     +   +     PE  +    
Sbjct: 21  PYSSGNLKVSDVHTLYWEQSGKPDG---HPVVFLHGGPGGGTAPSNRRFFDPEFYR---- 73

Query: 457 YIVSFDRPGYGESDPH 504
            IV FD+ G G+S PH
Sbjct: 74  -IVLFDQRGAGKSTPH 88

>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
 Frame = +3

Query: 114  AVVRLRQRHESPAASGRSRRL------RYIQKASPPCIRVPACTSVPSASGSASKNLRIP 275
            A  R R R   P++ G S            Q ASPP   VPA  S P  +      LR+P
Sbjct: 7217 AAFRPRGRRSRPSSRGASPNRSTSGSSHACQAASPP---VPAAASTPKGTPIQGSKLRLP 7273

Query: 276  RRPSG---HRAEDQA 311
               SG   H  ED A
Sbjct: 7274 GYLSGKGFHSGEDSA 7288

>HYES_HUMAN (P34913) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide|
           hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide
           hydrolase) (CEH)
          Length = 555

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +1

Query: 247 APPPKTCGSPG---GPPVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDA 417
           AP P +C       G     PR+RL    H     SG         +   HGF    Y  
Sbjct: 226 APLPTSCNPSDMSHGYVTVKPRVRL----HFVELGSGPA-------VCLCHGFPESWYSW 274

Query: 418 LRVSPELAQELGIYIVSFDRPGYGESDPHP 507
               P LAQ  G  +++ D  GYGES   P
Sbjct: 275 RYQIPALAQA-GYRVLAMDMKGYGESSAPP 303

>THIC_CORGL (Q8NQW7) Thiamine biosynthesis protein thiC|
          Length = 587

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 328 LAYHESGVPREQAKHKIVFVHGFDSC--RYDALRVSPELAQELGIYIVSFDRPGYGES 495
           +AYH+  +P E AK      H    C  ++ ++R+S ++    G  I     PG G+S
Sbjct: 504 IAYHDETLPAEPAKT----AHFCSMCGPKFCSMRISQDIRDMFGDQIAELGMPGVGDS 557

>PRM2_BOVIN (P19782) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 112

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +3

Query: 105 GREAVVRLRQRHESPAASGRSRRLRYIQ------KASPPCIRVPACTSVPSASGSASKNL 266
           GR    R   RH S   + R RR R  +       A PPC  +P  T   S  GS  + +
Sbjct: 43  GRTHRGRYHYRHRSHTRAYRRRRRRACRHRSRRGAAGPPCAPIPG-TPQASRQGSGCRRM 101

Query: 267 RIPRRPSGHR 296
           R  RR  G +
Sbjct: 102 RRRRRRCGRQ 111

>ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 8) (ADAM-TS
           8) (ADAM-TS8) (METH-2)
          Length = 905

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 26/72 (36%), Positives = 30/72 (41%)
 Frame = +1

Query: 220 LALLYRQLQAPPPKTCGSPGGPPVTAPRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFD 399
           L LL  QL  PPP  CG+P GP   A    L     L     G   E A H   F  GF 
Sbjct: 13  LLLLLLQLP-PPPLVCGAPAGPGTGAQASELVVPTRL----PGSASELAFHLSAFGQGF- 66

Query: 400 SCRYDALRVSPE 435
                 LR++P+
Sbjct: 67  -----VLRLAPD 73

>LIFO1_BURCE (P22089) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
          Length = 344

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
 Frame = +3

Query: 78  RASSCHGRAGREAVVRLRQ-----RHESPAASGRSRRLRYIQ--KASPPCIRVPACTSV- 233
           R +  +G  G  A+  +       RH    ASG        +   A+PP   VPA TS+ 
Sbjct: 12  RRAVVYGAVGLAAIAGVAMWSGAGRHGGTGASGEPPDASAARGPAAAPPQAAVPASTSLP 71

Query: 234 PSASGSASKNLRIPRRPSGHRAEDQA 311
           PS +GS++   R+P    GH A+ +A
Sbjct: 72  PSLAGSSAP--RLPLDAGGHLAKARA 95

>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)|
          Length = 900

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 120 VRLRQRHESPAASGRSRRLRYIQKASPPCIRVPACTSVPSASGSASKNLRIPRRPSGH 293
           V + ++ E P      + L+  QK +PP  +    ++  S SGS S +++ P+R   H
Sbjct: 673 VGMHKKQEDP------KTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAH 724

>CUT2_CAEEL (P34682) Cuticlin-2 precursor|
          Length = 231

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 250 PPPKTCGSPGGPPVTAPRIRL 312
           PPP  CG+P  PP+  PR  L
Sbjct: 35  PPPCGCGAPALPPLQLPRFEL 55

>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 253 PPKTCGSPGGPPVTAP 300
           PP T GSPG PPV AP
Sbjct: 747 PPATDGSPGPPPVPAP 762

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -2

Query: 482 PGRSKDTM*IPSSCASSGDTRRASYLHESNPWTKTILCLACSLGTPDSW*AKCLP 318
           P   KD   +   C + GD  R      S P+ + +       GTP  W   CLP
Sbjct: 694 PTECKDASVLDECCPTCGDGYRMLKFRLSTPYYRGVF------GTPSGWYKTCLP 742

>MANA_RHOMR (P49425) Mannan endo-1,4-beta-mannosidase (EC 3.2.1.78)|
           (Endo-(1,4)-beta-mannanase)
          Length = 1021

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 HKIV---FVHGFDSCRYDALRVSPELAQELGIYIV---SFDRPGYGESDPHPAR 513
           H+IV   F HG D CR    R SP     +G   V      R   G+ D HP R
Sbjct: 269 HRIVQNLFRHGIDPCRVGRCRRSPSELHGMGCADVRARGHGRHMRGQRDEHPGR 322

>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
            myosin heavy chain IIc) (NMHC II-C)
          Length = 1995

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 178  RSRRERPEAAGLSCRWRRRTTASRPALPWQEEARQVQARQSE 53
            R+ RE   A      WRRR      AL   EEAR+  AR++E
Sbjct: 1378 RAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAE 1419

>ACOC_PSEPU (Q59695) Dihydrolipoyllysine-residue acetyltransferase component of|
           acetoin cleaving system (EC 2.3.1.12) (Acetoin
           dehydrogenase E2 component) (Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system)
          Length = 370

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +1

Query: 295 APRIRLSDGRHLAYHESGVPREQAKHKIVFVHGFDSCRYDALRVSPELAQELGIYIVSFD 474
           AP+     GR L + E G    +    +V VHGF     + L   P LA E  +  ++ D
Sbjct: 112 APQKAEVGGRLLRWFELG---GEGGTPLVLVHGFGGDLNNWLFNHPALAAERRV--IALD 166

Query: 475 RPGYGES 495
            PG+GES
Sbjct: 167 LPGHGES 173

>YAC3_SCHPO (Q09817) Hypothetical protein C16C9.03 in chromosome I|
          Length = 498

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 398 SNPWTKTILCLACSLGTPDSW*AKCLPSLSLILGAVTGGP 279
           S P   TILC  C + TP +  A C+  + +     +G P
Sbjct: 15  SEPIASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIP 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,605,100
Number of Sequences: 219361
Number of extensions: 1580524
Number of successful extensions: 5743
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5735
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)