>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score =  132 bits (331), Expect = 9e-31
 Identities = 70/144 (48%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
 Frame = +2

Query: 134 SRGALSQRARAPIVE-TPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQAN 310
           S  A +    AP++  TPAPAPAP +V L ELLS+AGP+  FL+YL  T VI+TFQ+QAN
Sbjct: 19  SASAKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQAN 78

Query: 311 DTKQGITVFAPQDSAFAALNETVLSNLTADQLRSLMLHHAMPRYYQXXXXXXXXXXXPVS 490
           +T++GIT+F P+D AF A     LSNLT DQL+ L+L HA+P YY            PVS
Sbjct: 79  NTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVS 138

Query: 491 MFA---YKVNVTYAAGTIGVVSGW 553
            FA   Y +  T  +GT+ + S W
Sbjct: 139 TFAGGQYSLKFTDVSGTVRIDSLW 162

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +2

Query: 191 APAPRHVELAELLSLAGPYG--KFLEYLTKTDVIKTFQSQANDTKQGITVFAPQDSAFAA 364
           APAP    ++ +  L    G   F   L  + VIKTF+S     ++G+TVFAP D AF A
Sbjct: 180 APAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKA 236

Query: 365 LNETVLSNLTADQLRSLMLHHAMPRY 442
                L+NLT  ++ SL+ +HA+  Y
Sbjct: 237 RGVPDLTNLTQAEVVSLLEYHALAEY 262

>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 36/93 (38%), Positives = 51/93 (54%)
 Frame = +2

Query: 164 APIVETPAPAPAPRHVELAELLSLAGPYGKFLEYLTKTDVIKTFQSQANDTKQGITVFAP 343
           AP V T APAP+     +  LL  AG    F   L  + V+KT++S     ++G+TVFAP
Sbjct: 174 APGVLT-APAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAP 228

Query: 344 QDSAFAALNETVLSNLTADQLRSLMLHHAMPRY 442
            D AF A     L+ LT  ++ SL+ +HA+  Y
Sbjct: 229 SDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEY 261

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 11  PQPRSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPAP 190
           P  R  R +S A+P   T  S    +               + G +++       E+P+P
Sbjct: 392 PPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSP 451

Query: 191 APAPRHVELAE 223
           AP PR VEL+E
Sbjct: 452 APKPRKVELSE 462

>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = -2

Query: 243 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 88
           GP   SS  + T  GAG         GAG    G    W   P  +A+ + A+  AAA +
Sbjct: 420 GPGTGSSGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479

Query: 87  SI 82
           ++
Sbjct: 480 TV 481

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 11  PQPRSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPAP 190
           P  R  R +  A+P   T  S    +               + G +++       E+P+P
Sbjct: 394 PPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSP 453

Query: 191 APAPRHVELAE 223
           AP PR VEL+E
Sbjct: 454 APKPRKVELSE 464

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 11  PQPRSIRCNSLASPATHTTSSFAEMEXXXXXXXXXXXXXXXSRGALSQRARAPIVETPAP 190
           P  R  R +  A+P   T  S    +               + G +++       E+P+P
Sbjct: 394 PPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSP 453

Query: 191 APAPRHVELAE 223
           AP PR VEL+E
Sbjct: 454 APKPRKVELSE 464

>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -2

Query: 243 GPARESSSASSTWRGAGA--------GAGVSTIGARALWDSAPRESARQSNALTRAAALS 88
           GP   S   + T  GAG         GAG    G    W   P  +A+ + A+  AAA +
Sbjct: 420 GPGTGSGGGAGTAAGAGGPGAGHLPPGAGPGPGGGTMFWGHQPSGAAKDAAAVAAAAAAA 479

Query: 87  SI 82
           ++
Sbjct: 480 TV 481

>RS3_ACHAX (P41117) 30S ribosomal protein S3|
          Length = 257

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 253 VPGVPHQDRRDQDVSEPGQRHQAGHHRVRASRLGVRRPQRDRAVQ 387
           +PG  H++ R +  S     H  G  + R SR G RR Q D A +
Sbjct: 212 LPGQSHEELRKERQSSASSNHGGG--KRRPSRKGPRRSQEDAATE 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,636,306
Number of Sequences: 219361
Number of extensions: 962136
Number of successful extensions: 4298
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4247
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)