ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12f04 |
|---|---|
| Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 194 bits (492), Expect = 2e-49 Identities = 100/166 (60%), Positives = 118/166 (71%) Frame = +2 Query: 47 CDFPAIFNFGDSYSDTGAFPALFPAVQPPYGQTFFGMPAGRQSDGRLTIDFMAQSLGLRY 226 C FPAIFNFGDS SDTG A F PP+G +FFG PAGR DGRL IDF+A+SLGL Y Sbjct: 26 CHFPAIFNFGDSNSDTGGLSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLGLPY 85 Query: 227 LNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDVQIWQFQQFINRSRFVY 406 L+A+LDS+GSNF+ GANFA+A IR +N +L SG+SP SLDVQ QF F NRS+ V Sbjct: 86 LSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVR 145 Query: 407 NNIGGIYRAILPKPDHLVSKALYTFDIGANDLAMGYLEXMTTAQVE 544 + GG+Y+ +LP+ D SKALYTFDIG NDL GY T QVE Sbjct: 146 SR-GGVYKTMLPESDSF-SKALYTFDIGQNDLTAGYFANKTVEQVE 189
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 166 bits (420), Expect = 4e-41 Identities = 92/172 (53%), Positives = 115/172 (66%), Gaps = 1/172 (0%) Frame = +2 Query: 5 LLVVLERVRSDESPCDFPAIFNFGDSYSDTGAFPALFPAVQPPYGQTFFGMPAGRQSDGR 184 LL +L + E+ CDFPAIFNFGDS SDTG A F + PPYG+TFF GR SDGR Sbjct: 17 LLCMLSLAYASET-CDFPAIFNFGDSNSDTGGKAAAFYPLNPPYGETFFHRSTGRYSDGR 75 Query: 185 LTIDFMAQSLGLRYLNAYLDSLGSNFTQGANFASAAGTIRRVNGSLWT-SGYSPISLDVQ 361 L IDF+A+S L YL+ YL SLGSNF GA+FA+A TI+ + G+SP LDVQ Sbjct: 76 LIIDFIAESFNLPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGFSPFYLDVQ 135 Query: 362 IWQFQQFINRSRFVYNNIGGIYRAILPKPDHLVSKALYTFDIGANDLAMGYL 517 QF+QFI RS+F+ GGI+ ++P+ ++ KALYTFDIG NDL G+L Sbjct: 136 YSQFRQFIPRSQFI-RETGGIFAELVPE-EYYFEKALYTFDIGQNDLTEGFL 185
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 55.8 bits (133), Expect = 8e-08 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 16/169 (9%) Frame = +2 Query: 56 PAIFNFGDSYSDTGAFPALFPAVQP---PYGQTF-FGMPAGRQSDGRLTIDFMAQSLGLR 223 PA+F FGDS DTG L ++ PYG F F + GR S+G + D++A+ +G++ Sbjct: 203 PAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVK 262 Query: 224 -YLNAYLDS--LGSNFTQGANFASAAGTIRRVNGSLWTSGYSPISLDV--------QIWQ 370 + AYLD ++ G +FAS +GY+P + + Q+ Sbjct: 263 EIVPAYLDPKIQPNDLLTGVSFASGG------------AGYNPTTSEAANAIPMLDQLTY 310 Query: 371 FQQFINR-SRFVYNNIGGIYRAILPKPDHLVSKALYTFDIGANDLAMGY 514 FQ +I + +R V A L K + L+SK + G+NDL + Y Sbjct: 311 FQDYIEKVNRLVRQEKSQYKLAGLEKTNQLISKGVAIVVGGSNDLIITY 359
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 46.6 bits (109), Expect = 5e-05 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Frame = +2 Query: 56 PAIFNFGDSYSDTGAFPALFPAVQ---PPYGQTF-FGMPAGRQSDGRLTIDFMAQSLGLR 223 PA+F FGDS DTG L ++ PYG F G+ GR S+GR+ D++++ LG++ Sbjct: 124 PAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVK 183 Query: 224 -YLNAYLDS--------LGSNFTQGANFAS-AAGTIRRVNGSLWTSGYSPISLDVQIWQF 373 + AY+D S+ G +FAS AG + + + S + ++ Q+ F Sbjct: 184 EIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSES-----WKVTTMLDQLTYF 238 Query: 374 QQFINRSRFVYNNIGGIYRAILPKPDHLVSKALYTFDIGANDLAMGY 514 Q + R + + K +VSK G+NDL Y Sbjct: 239 QDYKKRMKKLVGK---------KKTKKIVSKGAAIVVAGSNDLIYTY 276
>PYRB_LISMO (Q8Y662) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 303 Score = 34.3 bits (77), Expect = 0.23 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -3 Query: 514 VAHGEVVGADVEGVKRLGDQVIWFGQDRSVDSTYVVVDEAAPVDELLELPDL 359 + H V ++++ +KRLG ++ + G D +Y+ PVDE++E D+ Sbjct: 155 IRHSRVANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLPVDEIVEKVDV 206
>PYRB_LISIN (Q92AH0) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 303 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -3 Query: 514 VAHGEVVGADVEGVKRLGDQVIWFGQDRSVDSTYVVVDEAAPVDELLELPDL 359 + H V ++++ +KRLG ++ + G D +Y+ PVDE++E D+ Sbjct: 155 IRHSRVANSNMKVLKRLGAKLFFSGPKEWFDDSYLEYGTYLPVDEIVEKVDV 206
>PLCB4_BOVIN (Q07722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) (PCL-C1) (Fragment) Length = 1023 Score = 31.6 bits (70), Expect = 1.5 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 8/162 (4%) Frame = +2 Query: 80 SYSDTGAFPALFPAVQPP--YGQT--FFGMPAGRQSDGRLTIDFMAQSLGLRYLNAY-LD 244 SY GA + P + Y Q F G + + + +S+GL YL + ++ Sbjct: 399 SYKYVGATTNIHPYLSTMINYAQPVKFQGFHVAEERNIHYNMSSFNESVGLGYLKTHAIE 458 Query: 245 SLGSNFTQGANFASAAGTIRRVNGS---LWTSGYSPISLDVQIWQFQQFINRSRFVYNNI 415 + N Q + G + N W SG +SL+ Q +N+ +F YN Sbjct: 459 FVNYNKRQMSRIYPKGGRVDSSNYMPQIFWNSGCQMVSLNYQTPDLAMQLNQGKFEYNGS 518 Query: 416 GGIYRAILPKPDHLVSKALYTFDIGANDLAMGYLEXMTTAQV 541 G L KPD + + TFD + G + + QV Sbjct: 519 CG----YLLKPD-FMRRPDRTFDPFSETPVDGVIAATCSVQV 555
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +1 Query: 139 PDLLRHASREAERRPPHHRLHGSKPGAALPECVSGFAREQLHAGSQ 276 P++LR S+ R PP + L G P A LP +S AR GSQ Sbjct: 781 PEILRKPSQPPPRPPPDY-LRGGSPPAPLPAHLSRAARNSPGPGSQ 825
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 31.6 bits (70), Expect = 1.5 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 139 PDLLRHASREAERRPPHHRLHGSKP 213 P ++R+ +R+A PP +R+HGS+P Sbjct: 329 PPMIRNGARDAPPPPPPYRMHGSEP 353
>PYRB_ENTFA (Q9L4T8) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 308 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/52 (25%), Positives = 29/52 (55%) Frame = -3 Query: 514 VAHGEVVGADVEGVKRLGDQVIWFGQDRSVDSTYVVVDEAAPVDELLELPDL 359 + H V ++++ + RLG ++ + G + D + V + P+DE++E D+ Sbjct: 168 ITHSRVAKSNMQLLNRLGAEIYFSGPEEWYDHQFDVYGQYVPLDEIVEKVDV 219
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 31.2 bits (69), Expect = 2.0 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 139 PDLLRHASREAERRPPHHRLHGSKP 213 P ++R+ +R+A PP +R+HGS+P Sbjct: 329 PPVIRNGARDAPPPPPPYRMHGSEP 353
>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +1 Query: 202 GSKPGAALPECVSGFAREQLHAGSQFRERRWNYQTSERELVDLRIQPH 345 G++PG + E L GS+F +W+ +TS R LV LR+ P+ Sbjct: 3 GAQPGVHALQLEPPTVVETLRRGSKFI--KWDEETSSRNLVTLRVDPN 48
>PYRB_LISMF (Q71YH8) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 303 Score = 31.2 bits (69), Expect = 2.0 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -3 Query: 514 VAHGEVVGADVEGVKRLGDQVIWFGQDRSVDSTYVVVDEAAPVDELLELPDL 359 + H V ++++ +KRLG ++ + G D +Y+ VDE++E D+ Sbjct: 155 IRHSRVANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLSVDEIVEKVDV 206
>PLCB4_RAT (Q9QW07) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 30.4 bits (67), Expect = 3.4 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 8/162 (4%) Frame = +2 Query: 80 SYSDTGAFPALFPAVQPP--YGQT--FFGMPAGRQSDGRLTIDFMAQSLGLRYLNAY-LD 244 SY GA + P + Y Q F G + + + +S+GL YL + ++ Sbjct: 551 SYKYVGATTNIHPYLSTMINYAQPVKFQGFHVAEERNIHYNMSSFNESVGLGYLKTHAIE 610 Query: 245 SLGSNFTQGANFASAAGTIRRVNGS---LWTSGYSPISLDVQIWQFQQFINRSRFVYNNI 415 + N Q + G + N W +G +SL+ Q +N+ +F YN Sbjct: 611 FVNYNKRQMSRIYPKGGRVDSSNYMPQIFWNAGCQMVSLNYQTPDLAMQLNQGKFEYNGS 670 Query: 416 GGIYRAILPKPDHLVSKALYTFDIGANDLAMGYLEXMTTAQV 541 G L KPD + + TFD + G + + QV Sbjct: 671 CG----YLLKPD-FMRRPDRTFDPFSETPVDGVIAATCSVQV 707
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 30.4 bits (67), Expect = 3.4 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 8/162 (4%) Frame = +2 Query: 80 SYSDTGAFPALFPAVQPP--YGQT--FFGMPAGRQSDGRLTIDFMAQSLGLRYLNAY-LD 244 SY GA + P + Y Q F G + + + +S+GL YL + ++ Sbjct: 551 SYKYVGATTNIHPYLSTMINYAQPVKFQGFHVAEERNIHYNMSSFNESVGLGYLKTHAIE 610 Query: 245 SLGSNFTQGANFASAAGTIRRVNGS---LWTSGYSPISLDVQIWQFQQFINRSRFVYNNI 415 + N Q + G + N W +G +SL+ Q +N+ +F YN Sbjct: 611 FVNYNKRQMSRIYPKGGRVDSSNYMPQIFWNAGCQMVSLNYQTPDLAMQLNQGKFEYNGS 670 Query: 416 GGIYRAILPKPDHLVSKALYTFDIGANDLAMGYLEXMTTAQV 541 G L KPD + + TFD + G + + QV Sbjct: 671 CG----YLLKPD-FMRRPDRTFDPFSETPVDGVIAATCSVQV 707
>DNMBP_MOUSE (Q6TXD4) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1580 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 442 GQDRSVDSTYVVVDEAAPVDELLELPDLHVQGNGAVSGGPQAPVH 308 GQD+ + VD P+ + L PD + NG VS PQ P+H Sbjct: 375 GQDKDASGSSPDVDLERPLAKDLSTPDPSEEVNG-VSSQPQVPIH 418
>YPQQ_KLEPN (P27509) Hypothetical protein in pqqA 5'region (ORF X) (Fragment)| Length = 271 Score = 30.0 bits (66), Expect = 4.4 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Frame = +2 Query: 134 YGQTFFGMPAGRQSDGRLT-----IDFMAQSLGLRYLNAYLDSLGSNF---TQGANFASA 289 +G F R SD LT ID++ +G ++ +LGS+F T Sbjct: 179 FGNAFLRADGRRDSDTPLTTIVRHIDYLINIMGEDHV-----ALGSDFDGITLPDELGDV 233 Query: 290 AGTIRRVNGSLWTSGYSPISLDVQIWQ 370 AG R +N +L SGY + LD +W+ Sbjct: 234 AGLPRLIN-TLRASGYDQLVLDKLLWR 259
>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2132 Score = 30.0 bits (66), Expect = 4.4 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Frame = -3 Query: 505 GEVVGADV-----EGVKRLGDQVIWFGQDRSVDSTYVVVDEAAPVDELLELPDLHVQGNG 341 GE GAD+ G+ F VDST V V A EL + + G+G Sbjct: 1250 GEYSGADIGSGPSSGLPDFSGLPSGFPTVSLVDSTLVEVITATTSSELEGRGTIGISGSG 1309 Query: 340 AVSGGPQAPVHSSDSSSG 287 VSG P + SS SG Sbjct: 1310 EVSGLPLGELDSSADISG 1327
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 29.6 bits (65), Expect = 5.8 Identities = 23/85 (27%), Positives = 38/85 (44%) Frame = +1 Query: 211 PGAALPECVSGFAREQLHAGSQFRERRWNYQTSERELVDLRIQPHFLGRADLAIPAVHQQ 390 PGA P QL ++ + T+ + +++ ++P + A + P QQ Sbjct: 435 PGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPPRSQQ 494 Query: 391 EPLRLQQHRWNLPSDLAQTRSPGLQ 465 +PL+ QH PS+LAQ S Q Sbjct: 495 QPLQKMQHP---PSELAQLLSQQTQ 516
>SNPC3_RAT (Q5BK68) snRNA-activating protein complex subunit 3 (SNAPc subunit| 3) (snRNA-activating protein complex 50 kDa subunit) (SNAPc 50 kDa subunit) (Small nuclear RNA-activating complex polypeptide 3) Length = 407 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 12/70 (17%) Frame = -3 Query: 352 QGNGAVSGGPQAPVHSSDSSSGAR-----------EIGSLREVAP*RIQIR-IQVTQPQA 209 QG GA GGPQ PV S SS +G+ E+ R+ + + + +PQA Sbjct: 6 QGGGA--GGPQHPVPSGSHSSFPEYELPELHTRVFHVGAFGELWRGRLGAQDLSLNEPQA 63 Query: 208 LSHEVDGEAA 179 + DGEA+ Sbjct: 64 AAQPTDGEAS 73
>HUTH_STRCO (Q9EWW1) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 512 Score = 29.3 bits (64), Expect = 7.6 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -3 Query: 469 RLGDQVIWFGQDRSVDSTYVVVDE-AAPVDELLELPDLHVQGNGAVSGGPQAPV 311 R QV G+D + V E AA VD + LPD V+ NG G P A V Sbjct: 285 RCAPQVAGAGRDTMAHAGLVAERELAAAVDNPVVLPDGRVESNGNFHGAPVAYV 338
>HUTH_STRAW (Q82I33) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 512 Score = 29.3 bits (64), Expect = 7.6 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -3 Query: 469 RLGDQVIWFGQDRSVDSTYVVVDE-AAPVDELLELPDLHVQGNGAVSGGPQAPVHSSDSS 293 R QV G+D + V E A+ VD + LPD V+ NG G P A V + Sbjct: 285 RCAPQVAGAGRDTLAHARLVAERELASAVDNPVVLPDGRVESNGNFHGAPVAYV-LDFLA 343 Query: 292 SGAREIGSLRE 260 A ++GS+ E Sbjct: 344 IAAADLGSIAE 354
>PGCA_RAT (P07897) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2124 Score = 29.3 bits (64), Expect = 7.6 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = -3 Query: 427 VDSTYVVVDEAAPVDELLELPDLHVQGNGAVSGGPQAPVHSSDSSSG 287 VDST V V A EL + V G+G SG P + + SS SG Sbjct: 1276 VDSTLVEVITATTASELEGRGTISVSGSGEESGPPLSELDSSADISG 1322
>PPM1F_RAT (Q9WVR7) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC| 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (Protein phosphatase 1F) Length = 450 Score = 28.9 bits (63), Expect = 9.9 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = -3 Query: 514 VAHGEVVGADVEGVKRLGDQVIWFGQDR-SVDSTYVVVDEAAPVDELLELPDLHVQGNGA 338 + HG ++ G+ + ++++ +DR S D+ V+V ELLE G G Sbjct: 370 LVHGHLLRQKGSGM-HVAEELVAVARDRGSHDNITVMVVFLRDPLELLE-------GGGQ 421 Query: 337 VSGGPQAPVHSSDSSSGAREI 275 +GG QA V S D S+G E+ Sbjct: 422 GAGGAQADVGSQDLSTGLSEL 442
>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +1 Query: 202 GSKPGAALPECVSGFAREQLHAGSQFRERRWNYQTSERELVDLRIQPH 345 G++PG + + L GS+F +W+ + S R LV LR+ P+ Sbjct: 3 GARPGVHALQLEPSTVVKTLRRGSKFI--KWDEEASSRNLVTLRVDPN 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,087,107 Number of Sequences: 219361 Number of extensions: 1418151 Number of successful extensions: 5034 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5025 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
