Clone Name | bart12f02 |
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Clone Library Name | barley_pub |
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 40.0 bits (92), Expect = 0.004 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 23/171 (13%) Frame = -3 Query: 472 VPTQSARPCTTTCGVKSVSSRSASTYA--FCRTVQALDAKGSFHPW*SQ*STWNPST--- 308 VPTQS+ P +T SVS+ S+S+++ T+ + P S S +PS+ Sbjct: 1235 VPTQSSSPASTLAYSPSVSTSSSSSFSTTTASTLTSTHTSVPLLPSSSSISASSPSSTSL 1294 Query: 307 -STARSPPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARS------STGSGAE 149 ST+ PA S + P KSS S P + S S+ S + Sbjct: 1295 LSTSLPSPAFTSSTLPTATAVSSSTFIASSLPLSSKSSLSLSPVSSSILMSQFSSSSSSS 1354 Query: 148 AVAPPLPKHA-----------RKRGAIATSTCLPPSRSSGDVNVVGKGSDC 29 + LP + + +IAT TC S+ +V+ + GS+C Sbjct: 1355 SSLASLPSLSISPTVDTVSVLQPTTSIATLTC-TDSQCQQEVSTICNGSNC 1404
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 35.8 bits (81), Expect = 0.082 Identities = 34/134 (25%), Positives = 47/134 (35%) Frame = -3 Query: 466 TQSARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*STWNPSTSTARSPP 287 T S+ P TT+ S S S ST + + S S ST + STST+ P Sbjct: 176 TTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSS----SSTSTSSSSTSTS---P 228 Query: 286 ALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRG 107 + S + SSTST P + S++ S A Sbjct: 229 SSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTS 288 Query: 106 AIATSTCLPPSRSS 65 + ST PS +S Sbjct: 289 TSSYSTSTSPSLTS 302 Score = 31.2 bits (69), Expect = 2.0 Identities = 26/104 (25%), Positives = 42/104 (40%) Frame = -3 Query: 475 SVPTQSARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*STWNPSTSTAR 296 S T S+ T++ + SS ++++ + T +L + S SQ ST S+ST+ Sbjct: 202 STSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTST 261 Query: 295 SPPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSST 164 SP + S + STST P SS+ Sbjct: 262 SPSS-TSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSS 304 Score = 28.9 bits (63), Expect = 10.0 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 1/158 (0%) Frame = -3 Query: 505 SRMAWASLSCSVPTQSARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*S 326 SR + +LS V + A P ++T ++S S T C T S+ Sbjct: 94 SRFSTLTLSTEVCSHEACPSSSTLPTTTLSVTSKFTSYICPTCHTTAISSL-----SEVG 148 Query: 325 TWNPSTSTARSPPALASEXXXXXXXXXXXXXXXXAHPCEEK-SSTSTGPGARSSTGSGAE 149 T +S+A P S ++P SSTST P + S++ S Sbjct: 149 TTTVVSSSAIEP----SSASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTS 204 Query: 148 AVAPPLPKHARKRGAIATSTCLPPSRSSGDVNVVGKGS 35 + + ++ST PS +S ++ S Sbjct: 205 TSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSS 242
>PIMT_RHOPA (Q6NCU3) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)| (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) Length = 218 Score = 34.7 bits (78), Expect = 0.18 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Frame = +3 Query: 108 PRFLACLGRGGATASAPEPVEDL----APGPVLVELFSSQGCAASPEADALVARLAQESS 275 PR LA + + A PEP+ DL AP P+ E SQ + +AL+ + + Sbjct: 14 PRVLAAMRKVPREAFLPEPMRDLAYEDAPVPIAAEQTMSQPYIVALMVEALLLQGSDNVL 73 Query: 276 EASAGGERAVLVLG 317 E AG A VLG Sbjct: 74 EIGAGSGYAAAVLG 87
>DC1L1_MOUSE (Q8R1Q8) Cytoplasmic dynein 1 light intermediate chain 1 (Dynein| light intermediate chain 1, cytosolic) (Dynein light chain A) (DLC-A) Length = 523 Score = 32.3 bits (72), Expect = 0.90 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 208 EKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRG 107 +K+ + GPG S G GA +P LP A+K G Sbjct: 454 KKTGSPGGPGVGGSPGGGAAGASPSLPPSAKKSG 487
>CRH1_YEAST (P53301) Probable glycosidase CRH1 precursor (EC 3.2.-.-) (Congo| red hypersensitive protein 1) Length = 507 Score = 32.3 bits (72), Expect = 0.90 Identities = 39/159 (24%), Positives = 58/159 (36%) Frame = -3 Query: 490 ASLSCSVPTQSARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*STWNPS 311 +S + S S+ T + V S S SAS+ + + S S S+ +PS Sbjct: 304 SSSTSSSTVSSSASSTVSSSVSSTVSSSASSTVSSSVSSTVSSSSSV----SSSSSTSPS 359 Query: 310 TSTARSPPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAEAVAPPL 131 +STA S LAS + + +S+ST SST + P Sbjct: 360 SSTATSSKTLASSSVTTSSSISSFEKQSSSSSKKTVASSSTSESIISSTKT-------PA 412 Query: 130 PKHARKRGAIATSTCLPPSRSSGDVNVVGKGSDCQCQDD 14 + R +A +T S S D V KG +D Sbjct: 413 TVSSTTRSTVAPTT--QQSSVSSDSPVQDKGGVATSSND 449
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 31.6 bits (70), Expect = 1.5 Identities = 27/124 (21%), Positives = 46/124 (37%) Frame = -3 Query: 460 SARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*STWNPSTSTARSPPAL 281 S T++ + ++ S+ST +T LD K S S +T + S+S+ S Sbjct: 121 STADSTSSTATSTSTTSSSSTSVSSKTSTKLDTKTST----SSSATHSSSSSSTTSTTTS 176 Query: 280 ASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRGAI 101 +SE SST++ + S+T S A + + + Sbjct: 177 SSETTTSSSSSSSSSSTSTTSTTSTTSSTTSTSSSPSTTSSSTSASSSSETSSTQATSSS 236 Query: 100 ATST 89 TST Sbjct: 237 TTST 240
>Y2318_SYNP7 (P37372) Hypothetical protein Synpcc7942_2318 (ORF 2)| Length = 208 Score = 31.2 bits (69), Expect = 2.0 Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Frame = +3 Query: 162 PVEDLAPGPVLVELFSS----QGCAASPEADALVARLAQESSEASAGGERAVLVLGFHVD 329 P D P + V F + QG SP+ ++A+L E AG + VL GF Sbjct: 49 PENDRDPNWIAVLHFQTPADLQGWLDSPQRAEILAQLPPEL----AGYSKTVLPQGF-AP 103 Query: 330 YWDYQGWKDPFASSAWTVRQKAYVEALRLDTLFTPQVVVQGRADCV 467 ++ K P A TV Y L L+ L TP + GRA V Sbjct: 104 WFSQLLHKPPSWKMALTVLLALYPTVLLLNLLITPHLQGLGRAGAV 149
>STNB_CAEEL (P90761) Putative stoned B-like protein (Unc-41)| Length = 1657 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = -3 Query: 217 PCEEKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRGAIATSTCLPP 77 P +E S T P A SSTG+ A A PP A K+ A PP Sbjct: 667 PVQELSPT---PEASSSTGTSAPARPPPARPEAPKKDETAVDAAAPP 710
>CH18_DROME (P07184) Chorion protein S18| Length = 172 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +3 Query: 129 GRGGATASAPEPVEDLAPGPVLVELFSSQGCAASPEADALVARLAQESSEASAGG 293 G GGA S P PV G + +S G +P DA LA+ + A + G Sbjct: 62 GYGGAYESVPVPVSSAYSGANVGSQYSGSGYGGAPPVDAQAIALAKLALAAPSAG 116
>QAY_NEUCR (P11636) Quinate permease (Quinate transporter)| Length = 537 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = +3 Query: 81 GRHVDVAMAPRFLACLGRGGATASAPEPVEDLAPGPV 191 GR +D +A R LA +G GGA+ P + +LAP V Sbjct: 121 GRGIDPIIAGRVLAGIGVGGASNMVPIYISELAPPAV 157
>SUZ12_DROME (Q9NJG9) Polycomb protein Su(z)12 (Suppressor 12 of zeste protein)| Length = 900 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -3 Query: 217 PCEEKSSTSTGPGARSSTGSGAEAVAPP--LPKHARKRGAIATSTCLPPSRSSGDVN 53 P ST + S +GSG+ ++ PP +P H KRG+ A+S P +S G N Sbjct: 691 PAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHL-KRGSAASS---PGVQSKGTEN 743
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor| Length = 317 Score = 30.0 bits (66), Expect = 4.5 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 2/138 (1%) Frame = -3 Query: 463 QSARPCTTTCGVKSVSSRSASTYAFCRTVQALDAKGSFHPW*SQ*STWNPSTSTARSPPA 284 Q+ CT + S S +ST + + F S ST + S+S++ S P+ Sbjct: 109 QACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFIT--SSSSTPSSSSSSSSSSPS 166 Query: 283 LASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAEAVAPPLPKHARK--R 110 +S SS+S+ + SS+ S + +P K + K Sbjct: 167 SSSSKSSSSSKSSSSSSSSSK---SSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSS 223 Query: 109 GAIATSTCLPPSRSSGDV 56 + TST S SSG + Sbjct: 224 SSFITSTTPASSSSSGAI 241
>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac| Length = 1120 Score = 30.0 bits (66), Expect = 4.5 Identities = 40/176 (22%), Positives = 57/176 (32%), Gaps = 4/176 (2%) Frame = -3 Query: 541 FTFMAGEG*RGASRMAW----ASLSCSVPTQSARPCTTTCGVKSVSSRSASTYAFCRTVQ 374 F M E R AS +A A S S + SAR T + S+R+AST A Sbjct: 106 FELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHAADAADSARAASTSAGQAASS 165 Query: 373 ALDAKGSFHPW*SQ*STWNPSTSTARSPPALASEXXXXXXXXXXXXXXXXAHPCEEKSST 194 A A S ST + + A+ + S Sbjct: 166 AQSASS---------SAGTASTKATEASKSAAAAESSKSAAATSAGAAKTSETNASASLQ 216 Query: 193 STGPGARSSTGSGAEAVAPPLPKHARKRGAIATSTCLPPSRSSGDVNVVGKGSDCQ 26 S A ++T +EA A K A ++ T S SS + G+ + Sbjct: 217 SAATSASTATTKASEAATSARDAAASKEAAKSSETNASSSASSAASSATAAGNSAK 272
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/79 (27%), Positives = 29/79 (36%) Frame = -3 Query: 328 STWNPSTSTARSPPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAE 149 S + STS+A S ++ P E+ T PG S T GA Sbjct: 422 SAASSSTSSASSSSSMNDGSNAKKTSDAAVSLPVGQQPAAEQPHVPTAPGGPSQT--GAS 479 Query: 148 AVAPPLPKHARKRGAIATS 92 AVA P A A+A + Sbjct: 480 AVAAQAPSSAMPTAAMAAT 498
>FTSK2_NEIMB (Q9JZG4) DNA translocase ftsK 2| Length = 1014 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 144 TASAPEPVEDLAPGPVLVELFSSQGCAASPEADALVARLAQESSEA 281 T PEP+E L V+V+ F+ A + + L+ARLAQ++ A Sbjct: 787 TPDDPEPLEKLPFIVVVVDEFADLMMTAGKKIEELIARLAQKARAA 832
>FTSK2_NEIMA (Q9JUK9) DNA translocase ftsK 2| Length = 1014 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 144 TASAPEPVEDLAPGPVLVELFSSQGCAASPEADALVARLAQESSEA 281 T PEP+E L V+V+ F+ A + + L+ARLAQ++ A Sbjct: 787 TPDNPEPLEKLPFIVVVVDEFADLMMTAGKKIEELIARLAQKARAA 832
>GCH1_DROME (P48596) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I) (Protein| punch) Length = 324 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +3 Query: 141 ATASAPEPVEDLAPGPVLVELFSSQ 215 ATA A PVE++AP P LV L +Q Sbjct: 61 ATAIAGTPVEEVAPAPALVPLAGNQ 85
>BAT3_MOUSE (Q9Z1R2) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1154 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -3 Query: 196 TSTGPGARSSTGSGAEAVAPPLPKHARKRGAIATSTCLPPSRSSGDVNVVG 44 T TG GAR GAEA P A +T LPPS ++ D + G Sbjct: 387 TMTGNGARPPPAPGAEAATP----------GSAQATSLPPSSTTVDSSTEG 427
>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1033 Score = 29.3 bits (64), Expect = 7.7 Identities = 23/69 (33%), Positives = 30/69 (43%) Frame = -3 Query: 211 EEKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRGAIATSTCLPPSRSSGDVNVVGKGSD 32 EEK STS P R S+ + + V P RK G +S SRS D K Sbjct: 562 EEKRSTSL-PAPRDSSSTRGDRVCSPYNHRHRKGGRSRSSDSRSQSRSGHDPRNHRKHGK 620 Query: 31 CQCQDDRSR 5 + ++ RSR Sbjct: 621 KRLRNKRSR 629
>HSCA_CHRVO (Q7NZ33) Chaperone protein hscA homolog| Length = 619 Score = 29.3 bits (64), Expect = 7.7 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Frame = +3 Query: 87 HVDVAMAPRFLACLGRGGA----TASAPEPVEDLAPGPVLVELFSSQGCAASPEADALVA 254 H + RF+ GRG + S P D APG +V+L + G + E + + Sbjct: 80 HNTIVSVKRFM---GRGVSDIKDAGSLPYRFVD-APG--MVQLVTRAGVKSPVEVSSDIL 133 Query: 255 RLAQESSEASAGGE--RAVLVLGFHVDYWDYQGWKD 356 R +E +EAS GGE AV+ + + D Q KD Sbjct: 134 RALKERAEASLGGELTGAVITVPAYFDDAQRQATKD 169
>DC1L1_RAT (Q9QXU8) Cytoplasmic dynein 1 light intermediate chain 1 (Dynein| light intermediate chain 1, cytosolic) (Dynein light chain A) (DLC-A) Length = 523 Score = 29.3 bits (64), Expect = 7.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 208 EKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRG 107 +K+ + GPG S G GA + LP A+K G Sbjct: 454 KKTGSPGGPGVGGSPGGGAAGASTSLPPSAKKSG 487
>SYL_SILPO (Q5LMY0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 852 Score = 28.9 bits (63), Expect = 10.0 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = +3 Query: 327 DYWDYQGWKDPFASSAWTVRQKAYVEALRLDTLFTPQVVVQGR--------ADCVGTEQD 482 D W +QG + A++ W V EA+ +D L T V + G+ AD T+ + Sbjct: 764 DIWAHQGGEGLIAAAPWPVAD----EAMLVDALVTLPVQINGKRRAEISVPADMDKTQVE 819 Query: 483 KLA 491 KLA Sbjct: 820 KLA 822
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 28.9 bits (63), Expect = 10.0 Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 7/90 (7%) Frame = -3 Query: 292 PPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTS---TGPGARSSTGSGAEAVAPP-LPK 125 P +LA E P + SSTS T P S SG APP L K Sbjct: 1323 PSSLAGETLGSFSGLRVGQADDSTKPTNKASSTSLTSTQPTKTSGVPSGFNFTAPPVLGK 1382 Query: 124 HAR---KRGAIATSTCLPPSRSSGDVNVVG 44 H A TS P + S+ V G Sbjct: 1383 HTEPPVTSSATTTSVAPPAATSTSSTAVFG 1412
>SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1078 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 138 GATASAPEPVEDLAPGPVLVELFSSQGCAASPEADALVA 254 G + A DL PG VLV+ + +G AA+ +A LVA Sbjct: 951 GFSVQADGVTFDLTPGSVLVDAKAPEGVAAAEDAGYLVA 989
>ARMX1_HUMAN (Q9P291) Armadillo repeat-containing X-linked protein 1 (Protein| ALEX1) (ARM protein lost in epithelial cancers on chromosome X 1) Length = 453 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -3 Query: 211 EEKSSTSTGPGARSSTGSGAEAVAPPLPKHARKRGAIATSTCLPP---SRSSGDVNVVGK 41 +E++S G GAR T SG +AP LP + G C P SR+ G + K Sbjct: 116 KEQASAKAGKGARVGTISGNRTLAPSLPCPGGRGGG-----CHPTRSGSRAGGRASGKSK 170 Query: 40 G 38 G Sbjct: 171 G 171
>AREA_EMENI (P17429) Nitrogen regulatory protein areA| Length = 876 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/84 (27%), Positives = 34/84 (40%) Frame = -3 Query: 313 STSTARSPPALASEXXXXXXXXXXXXXXXXAHPCEEKSSTSTGPGARSSTGSGAEAVAPP 134 S +T+ SPPA+ P + S+ +T PG ++ G GA VAP Sbjct: 760 SNTTSESPPAMPGSSGRGSGVVPIAAA-----PPKSSSAATTSPG--TNNGCGAVQVAPK 812 Query: 133 LPKHARKRGAIATSTCLPPSRSSG 62 + K + + P S SSG Sbjct: 813 RQRRLEKASDVDMAES-PSSTSSG 835 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,639,875 Number of Sequences: 219361 Number of extensions: 846181 Number of successful extensions: 4133 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4116 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)