ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12e08 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 120 bits (301), Expect = 2e-27 Identities = 62/114 (54%), Positives = 77/114 (67%), Gaps = 1/114 (0%) Frame = +2 Query: 203 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARTADYFDVIAGTSTGALVASM 379 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 380 LAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVNGPKYDG 541 + P E RP AKDI FY ++GPKIF G++ GPKYDG Sbjct: 86 ITTPNETNRPFAAAKDIVPFYFEHGPKIFQSS------------GSIFGPKYDG 127
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 120 bits (301), Expect = 2e-27 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 1/126 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARTADYFDVI 343 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 121 Query: 524 GPKYDG 541 GP+YDG Sbjct: 122 GPRYDG 127
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 117 bits (292), Expect = 3e-26 Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 1/126 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARTADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIF 112 Query: 524 GPKYDG 541 GP+YDG Sbjct: 113 GPRYDG 118
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 115 bits (289), Expect = 6e-26 Identities = 64/126 (50%), Positives = 79/126 (62%), Gaps = 1/126 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARTADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSII 121 Query: 524 GPKYDG 541 GP YDG Sbjct: 122 GPMYDG 127
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 115 bits (289), Expect = 6e-26 Identities = 64/126 (50%), Positives = 79/126 (62%), Gaps = 1/126 (0%) Frame = +2 Query: 167 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARTADYFDVI 343 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 344 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIFPQRSWGFLTPIGNLFGAVN 523 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF N G++ Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------------NYSGSIL 121 Query: 524 GPKYDG 541 GP YDG Sbjct: 122 GPMYDG 127
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARTADYFDVIAGTSTGALVA 373 +L +DGGG++GLI +L +E T D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARTADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E T D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +2 Query: 218 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARTADYFDVIAGTSTGALVA 373 +L +DGGG++GL+ +L +E T D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +2 Query: 221 LSIDGGGIRGLIPSTILACLESKLQELDGPDARTADYFDVIAGTSTGALVASMLAA 388 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>Y600_TREPA (O83609) Hypothetical zinc metalloprotease TP0600 (EC 3.4.24.-)| Length = 450 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 406 PLVLAGGRQHGRDQRAGARPGDHVEVVRGARVR 308 PLV+A HG RAG P D + V G RV+ Sbjct: 221 PLVVAAVDAHGAASRAGLEPEDKILAVAGRRVQ 253
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -2 Query: 517 GAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLAG 389 G ++ P WG+E P L E P + D L E PLV+AG Sbjct: 452 GPKEAPPWGKEQPLHL-EPSPPASPTQSPDNLTCTETPLVIAG 493
>RPOZ_MYCTU (P66721) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -2 Query: 541 AVVLGTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 A+V+ A Q+ D+ + + EY+GP+VE GL+E+PL +A Sbjct: 52 ALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>RPOZ_MYCBO (P66722) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 110 Score = 30.0 bits (66), Expect = 4.4 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = -2 Query: 541 AVVLGTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLA 392 A+V+ A Q+ D+ + + EY+GP+VE GL+E+PL +A Sbjct: 52 ALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP------GLQEKPLSIA 95
>Y924_EHRRG (Q5FGP9) UPF0054 protein ERGA_CDS_09240| Length = 157 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 523 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 416 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>Y882_EHRRW (Q5HA01) UPF0054 protein Erum8820/ERWE_CDS_09330| Length = 157 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 523 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 416 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 149 MCSHGHAPTCVTCPPPSQGQLITV 220 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>AMPA_SYMTH (Q67NI4) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 491 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Frame = -2 Query: 529 GTVHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLAGGRQHGRDQRAGAR 350 G +HG ++PDW E P EV+ V +LG E G +HGR G Sbjct: 126 GALHGLFRLPDWKSEKK--------PRPEVEAVHILGGER----AREGAEHGRIVAEGVN 173 Query: 349 --------PGDHVEVVR 323 PG+H+ + Sbjct: 174 LARALAWTPGNHLTAAK 190
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 192 GGQVTHVGAWPWLHMVSLAPSHCS 121 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68
>TOP2A_CHICK (O42130) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1553 Score = 29.3 bits (64), Expect = 7.6 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Frame = -2 Query: 511 EQVPDWGQESPAPLW--------EYLGPVVEVKLVDVL-GLEERPLVLAGGRQHGRDQRA 359 +++ D +SP+ LW E L V ++ D + G+ +PL + GG+Q G+ + Sbjct: 1145 KELEDLKHKSPSDLWKEDLAAFVEELDAVEAKQMQDEMAGITGKPLKVKGGKQGGKQKVT 1204 Query: 358 GARPGDHVEVVRGARVRP 305 A+ + + G RV P Sbjct: 1205 KAQLAEVMPSPHGIRVVP 1222
>Y1964_AQUAE (O67776) Hypothetical zinc metalloprotease aq_1964 (EC 3.4.24.-)| Length = 429 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = -2 Query: 475 PLWEYLGPVVEVKLVDVLGLE-----ERPLVLAGGRQHGRDQRAGARPGDHVEVVRGARV 311 PL+ +L ++ LV G+E + P+V+ ++ Q+ G +PGD + + G V Sbjct: 95 PLFNFLFTILVFALVYTAGVEVPKYLKEPVVVGYVQRDSIAQKIGIKPGDKIIKINGYEV 154 Query: 310 R 308 R Sbjct: 155 R 155
>COAD_BDEBA (Q6MQ60) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 160 Score = 28.9 bits (63), Expect = 9.9 Identities = 8/26 (30%), Positives = 21/26 (80%) Frame = +2 Query: 221 LSIDGGGIRGLIPSTILACLESKLQE 298 ++I+GG ++GL+P ++ +E+K+++ Sbjct: 135 VAINGGALKGLVPDVVVEAMENKIRK 160
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -3 Query: 423 LAWKSGRLFSPGAASMDATSAPVLVPAITSK*SAVRASGPSSSWSLDSRQ 274 L W RL P AS T P P+ S + + + GPS WSL R+ Sbjct: 1487 LQWPPPRLPGPPPASPAPTEGPR--PSRPSGPALLNSEGPSGKWSLGGRK 1534 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,106,783 Number of Sequences: 219361 Number of extensions: 1141523 Number of successful extensions: 4189 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4036 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4175 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
