Clone Information

BLAST Search Result

Clone Name	bart12e05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	245	6e-65
2	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	232	5e-61
3	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	216	4e-56
4	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	216	5e-56
5	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	216	5e-56
6	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	209	6e-54
7	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	206	4e-53
8	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	194	2e-49
9	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	191	1e-48
10	PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ...	185	8e-47
11	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	180	2e-45
12	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	156	5e-38
13	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	88	2e-17
14	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	88	2e-17
15	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	86	8e-17
16	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	85	1e-16
17	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	84	2e-16
18	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	84	3e-16
19	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	84	3e-16
20	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	84	3e-16
21	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	84	3e-16
22	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	83	5e-16
23	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	83	5e-16
24	PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P...	83	5e-16
25	PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4	82	1e-15
26	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	82	2e-15
27	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	79	1e-14
28	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	79	1e-14
29	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	77	4e-14
30	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	74	2e-13
31	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	74	3e-13
32	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	74	4e-13
33	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	72	2e-12
34	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	70	4e-12
35	PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso...	67	4e-11
36	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	63	7e-10
37	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	62	1e-09
38	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	62	1e-09
39	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	62	1e-09
40	PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A	61	3e-09
41	PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-bindi...	61	3e-09
42	PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-bin...	61	3e-09
43	PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-b...	60	6e-09
44	PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-bin...	60	6e-09
45	PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-b...	60	6e-09
46	PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ...	56	9e-08
47	PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog ...	55	1e-07
48	PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-bin...	54	3e-07
49	PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ...	54	3e-07
50	PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ...	53	6e-07
51	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	52	1e-06
52	PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (T...	49	1e-05
53	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	49	1e-05
54	PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (P...	48	2e-05
55	PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Prote...	47	5e-05
56	PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homo...	46	7e-05
57	PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome ...	46	9e-05
58	PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome ...	46	9e-05
59	PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasom...	46	9e-05
60	PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasom...	46	9e-05
61	PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasom...	46	9e-05
62	PRS8_DROME (O18413) 26S protease regulatory subunit 8	43	6e-04
63	PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Prote...	42	0.001
64	PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-bindi...	41	0.002
65	PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog	41	0.002
66	PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S prote...	41	0.002
67	PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (C...	41	0.003
68	PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S prote...	41	0.003
69	PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S prote...	41	0.003
70	PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S prote...	41	0.003
71	PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 prot...	40	0.005
72	PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)	40	0.005
73	PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 prot...	40	0.005
74	PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 prot...	40	0.005
75	PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 pro...	39	0.009
76	PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7	37	0.043
77	CE290_HUMAN (O15078) Centrosomal protein Cep290	32	1.4
78	HDA4_CAEEL (O17323) Histone deacetylase 4 (Histone deacetylase 7...	31	2.4
79	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	31	3.1
80	MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1	31	3.1
81	LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase...	31	3.1
82	LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1....	30	4.0
83	MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura...	30	4.0
84	CING_HUMAN (Q9P2M7) Cingulin	30	4.0
85	LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1....	30	4.0
86	CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-...	30	4.0
87	FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)	30	5.3
88	PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)	30	6.9
89	RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase	30	6.9
90	HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13...	29	9.0
91	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	29	9.0
92	CE290_BOVIN (Q9TU23) Centrosomal protein Cep290	29	9.0

>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  245 bits (626), Expect = 6e-65
 Identities = 123/136 (90%), Positives = 131/136 (96%)
 Frame = +1

Query: 187 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 366
           D++DLYGRLKSL+R +EF +IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM
Sbjct: 26  DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           VD NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL+
Sbjct: 86  VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145

Query: 547 SSEKPNVLYSDIGGCD 594
            SEKP+V Y+DIGGCD
Sbjct: 146 QSEKPDVSYNDIGGCD 161

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>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score =  232 bits (592), Expect = 5e-61
 Identities = 117/137 (85%), Positives = 126/137 (91%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 363
           + +DDLY RLKSLQR +EF+EIQEEYVKDE KNL+RE LRAQEEVKRIQSVPLVIGQFME
Sbjct: 30  DGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFME 89

Query: 364 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 543
           M+D NN IVGSTTGSNYYVRILSTINRELLKPSASV L RHSNALVDVLPPEADSSISLL
Sbjct: 90  MIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLL 149

Query: 544 ASSEKPNVLYSDIGGCD 594
           + SEKP+V Y+DIGGCD
Sbjct: 150 SQSEKPDVTYNDIGGCD 166

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>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score =  216 bits (550), Expect = 4e-56
 Identities = 107/136 (78%), Positives = 122/136 (89%)
 Frame = +1

Query: 187 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 366
           + +DLY + K LQR +EF+E+QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct: 33  ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 92

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           VD N GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L 
Sbjct: 93  VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 152

Query: 547 SSEKPNVLYSDIGGCD 594
           + EKP+V YSDIGG D
Sbjct: 153 ADEKPDVQYSDIGGMD 168

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>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score =  216 bits (549), Expect = 5e-56
 Identities = 105/137 (76%), Positives = 122/137 (89%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 363
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 364 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 543
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 544 ASSEKPNVLYSDIGGCD 594
            S +KP+V+Y+DIGG D
Sbjct: 155 TSDQKPDVMYADIGGMD 171

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>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score =  216 bits (549), Expect = 5e-56
 Identities = 105/137 (76%), Positives = 122/137 (89%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 363
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 364 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 543
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 544 ASSEKPNVLYSDIGGCD 594
            S +KP+V+Y+DIGG D
Sbjct: 155 TSDQKPDVMYADIGGMD 171

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>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score =  209 bits (531), Expect = 6e-54
 Identities = 101/137 (73%), Positives = 120/137 (87%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 363
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 364 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 543
            VD N  IV STTGSNYYVR++STI+RELLKP+ASVALH+HSNALVDVLPP ADSSI +L
Sbjct: 95  AVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMML 154

Query: 544 ASSEKPNVLYSDIGGCD 594
            S +KP+V+Y+DIGG D
Sbjct: 155 TSDQKPDVMYADIGGMD 171

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>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score =  206 bits (524), Expect = 4e-53
 Identities = 98/136 (72%), Positives = 120/136 (88%)
 Frame = +1

Query: 187 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 366
           D  D Y  LK LQRH+E++++QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME 
Sbjct: 37  DGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEA 96

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D N GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L 
Sbjct: 97  IDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLG 156

Query: 547 SSEKPNVLYSDIGGCD 594
            +EKP+V Y+D+GG D
Sbjct: 157 ENEKPDVTYADVGGLD 172

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>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score =  194 bits (492), Expect = 2e-49
 Identities = 94/136 (69%), Positives = 118/136 (86%)
 Frame = +1

Query: 187 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 366
           ++ DLY R K+L+R +E +++QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E 
Sbjct: 5   EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D N  IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L 
Sbjct: 65  IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124

Query: 547 SSEKPNVLYSDIGGCD 594
             E+P+V Y+D+GG D
Sbjct: 125 PDERPDVSYADVGGLD 140

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>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score =  191 bits (486), Expect = 1e-48
 Identities = 91/135 (67%), Positives = 116/135 (85%)
 Frame = +1

Query: 190 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 369
           + D+Y +LK L++  E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +
Sbjct: 44  NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPI 103

Query: 370 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 549
           D N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++  
Sbjct: 104 DQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGE 163

Query: 550 SEKPNVLYSDIGGCD 594
           +EKP+V Y+D+GG D
Sbjct: 164 NEKPDVTYADVGGLD 178

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>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score =  185 bits (470), Expect = 8e-47
 Identities = 96/133 (72%), Positives = 110/133 (82%)
 Frame = +1

Query: 196 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 375
           DLY ++KSL+  ++F  IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD 
Sbjct: 24  DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDS 83

Query: 376 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 555
           N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL + E
Sbjct: 84  NTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADE 143

Query: 556 KPNVLYSDIGGCD 594
           KP+  YSDIGG D
Sbjct: 144 KPSESYSDIGGGD 156

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>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score =  180 bits (457), Expect = 2e-45
 Identities = 88/133 (66%), Positives = 110/133 (82%)
 Frame = +1

Query: 196 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 375
           D Y +L +L+R +  +++ E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VD 
Sbjct: 35  DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQ 94

Query: 376 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 555
           N+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   E
Sbjct: 95  NHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDE 154

Query: 556 KPNVLYSDIGGCD 594
           KP++ Y DIGG D
Sbjct: 155 KPDISYGDIGGLD 167

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>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score =  156 bits (394), Expect = 5e-38
 Identities = 73/132 (55%), Positives = 103/132 (78%)
 Frame = +1

Query: 199 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 378
           L+ R K ++R +  +EI+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9   LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68

Query: 379 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 558
             IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++  SEK
Sbjct: 69  TAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEK 128

Query: 559 PNVLYSDIGGCD 594
           P+V Y D+GG D
Sbjct: 129 PSVTYGDVGGLD 140

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>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 43/129 (33%), Positives = 79/129 (61%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 387
           R K+L++ +E    ++  +++E +  +  + + + +++R++  PL++G   E++D    I
Sbjct: 57  RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVI 116

Query: 388 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNV 567
           V S+TG  +   +  T++R  L+P A+VAL++ S A+VDVLP E DS +  +   E P+V
Sbjct: 117 VKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDV 176

Query: 568 LYSDIGGCD 594
            Y DIGG D
Sbjct: 177 SYDDIGGLD 185

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>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 47/131 (35%), Positives = 78/131 (59%)
 Frame = +1

Query: 202 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           Y +L+ L R +E    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++   
Sbjct: 20  YYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            +V S+TG  + V     IN E LKP A VAL++ + A+V+VLP   D  +      EKP
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKP 136

Query: 562 NVLYSDIGGCD 594
            V Y DIGG D
Sbjct: 137 EVSYEDIGGLD 147

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>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 45/125 (36%), Positives = 74/125 (59%)
 Frame = +1

Query: 220 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 399
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV + 
Sbjct: 20  LKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 400 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 579
            G  + VRI   I R+ LKP A VAL + + A+V++LP E D S+      E+P V Y+D
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYND 139

Query: 580 IGGCD 594
           IGG +
Sbjct: 140 IGGLE 144

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>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 44/131 (33%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++
Sbjct: 58  KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDH 117

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + P
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSP 177

Query: 562 NVLYSDIGGCD 594
              YSDIGG +
Sbjct: 178 TESYSDIGGLE 188

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>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 42/123 (34%), Positives = 74/123 (60%)
 Frame = +1

Query: 220 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 399
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 81

Query: 400 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 579
            G  + VRI   I R+ L+P A VAL + + A++++LP   D ++      E+PNV Y+D
Sbjct: 82  NGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYND 141

Query: 580 IGG 588
           IGG
Sbjct: 142 IGG 144

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>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 39/131 (29%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 562 NVLYSDIGGCD 594
              Y+DIGG D
Sbjct: 181 QETYADIGGLD 191

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>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 39/131 (29%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 562 NVLYSDIGGCD 594
              Y+DIGG D
Sbjct: 181 QETYADIGGLD 191

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>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 39/131 (29%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 562 NVLYSDIGGCD 594
              Y+DIGG D
Sbjct: 181 QETYADIGGLD 191

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>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 39/131 (29%), Positives = 82/131 (62%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 381
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAP 180

Query: 562 NVLYSDIGGCD 594
              Y+DIGG D
Sbjct: 181 QETYADIGGLD 191

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>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 42/123 (34%), Positives = 74/123 (60%)
 Frame = +1

Query: 220 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 399
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 400 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSD 579
            G  + VRI   I+R+ L+P   VAL + + A+V++LP   D ++      E+PNV Y+D
Sbjct: 82  NGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYND 141

Query: 580 IGG 588
           IGG
Sbjct: 142 IGG 144

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>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 4/139 (2%)
 Frame = +1

Query: 184 EDDDDLYGRLKS----LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 351
           ED+   +G        L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G
Sbjct: 3   EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAG 62

Query: 352 QFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSS 531
             +E++D +  IV +  G  + VRI   I++  L+P   VAL + + A++++LP   D +
Sbjct: 63  SVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPA 122

Query: 532 ISLLASSEKPNVLYSDIGG 588
           +      E+PNV Y+DIGG
Sbjct: 123 VLGFEVVERPNVTYNDIGG 141

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>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 45/132 (34%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDGN 378
           RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D +
Sbjct: 68  RLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query: 379 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 558
           + IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++   + 
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185

Query: 559 PNVLYSDIGGCD 594
           P   Y+DIGG +
Sbjct: 186 PTESYADIGGLE 197

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>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 41/134 (30%), Positives = 83/134 (61%), Gaps = 5/134 (3%)
 Frame = +1

Query: 208 RLKSL--QRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVD 372
           RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D
Sbjct: 62  RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120

Query: 373 GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASS 552
             + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++   
Sbjct: 121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLE 180

Query: 553 EKPNVLYSDIGGCD 594
           + P   Y+D+GG D
Sbjct: 181 KAPQETYADVGGLD 194

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>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 40/132 (30%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 378
           +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct: 60  KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query: 379 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 558
           + IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + 
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKA 178

Query: 559 PNVLYSDIGGCD 594
           P   Y+DIGG D
Sbjct: 179 PQETYADIGGLD 190

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>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 42/127 (33%), Positives = 76/127 (59%)
 Frame = +1

Query: 214 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVG 393
           ++L   +  +E  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V 
Sbjct: 31  RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVK 90

Query: 394 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLY 573
           STTG ++ +     I+R+ L+P A VAL++ + ++VDVLP E D  ++ +   EKP+V Y
Sbjct: 91  STTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSY 150

Query: 574 SDIGGCD 594
             IGG +
Sbjct: 151 EQIGGLE 157

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>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 41/124 (33%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
 Frame = +1

Query: 232 MEFVEIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 402
           ++ V + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++
Sbjct: 17  VQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSS 76

Query: 403 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDI 582
           G N  V I S I+++L+KP  SVAL++  + +++VLP + D  +  +   E+PNV YS+I
Sbjct: 77  GPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEI 136

Query: 583 GGCD 594
           GG +
Sbjct: 137 GGLE 140

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>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 39/131 (29%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDGNN 381
           RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D ++
Sbjct: 69  RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESH 128

Query: 382 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKP 561
            IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++   + P
Sbjct: 129 AIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAP 188

Query: 562 NVLYSDIGGCD 594
              Y+DIGG D
Sbjct: 189 LESYADIGGLD 199

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>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 37/132 (28%), Positives = 74/132 (56%)
 Frame = +1

Query: 199 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 378
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 379 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 558
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E 
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIES 153

Query: 559 PNVLYSDIGGCD 594
             V Y  IGG D
Sbjct: 154 VEVDYDQIGGLD 165

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>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 37/132 (28%), Positives = 74/132 (56%)
 Frame = +1

Query: 199 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 378
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 379 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEK 558
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E 
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIES 153

Query: 559 PNVLYSDIGGCD 594
             V Y  IGG D
Sbjct: 154 IEVDYDQIGGLD 165

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>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 35/108 (32%), Positives = 62/108 (57%)
 Frame = +1

Query: 271 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 450
           E+ +L++EL   + E+ ++ S P +    +E++D N  +V S+TG N  V + + ++   
Sbjct: 38  EKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARS 97

Query: 451 LKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
           LKP A VAL+   + +VDVLP   D  +  +   E+P V + D+GG +
Sbjct: 98  LKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLE 145

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>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 38/135 (28%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
 Frame = +1

Query: 211 LKSLQRHMEFVEIQEEYVKDEQKN---------LKRELLRAQEEVKRIQSVPLVIGQFME 363
           LK  +   +  E++ + ++ E KN         +K+E    + E+ +++  PL++G  ++
Sbjct: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77

Query: 364 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 543
            V+    +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +
Sbjct: 78  KVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAM 137

Query: 544 ASSEKPNVLYSDIGG 588
              EKP++ + DIGG
Sbjct: 138 EIEEKPDISFEDIGG 152

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>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 37/129 (28%), Positives = 70/129 (54%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 387
           R+  L+  +  +E++++ ++ E   L +E    + E+ R++  PL++G  ++ V     +
Sbjct: 48  RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107

Query: 388 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNV 567
           V S+TG ++ V +   +N + L P   V L++ +  +VDVLP   D     +   E+PNV
Sbjct: 108 VKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNV 167

Query: 568 LYSDIGGCD 594
            Y DIGG +
Sbjct: 168 RYEDIGGLE 176

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>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
 Frame = +1

Query: 187 DDDDLYGRLKSLQRHMEFVEIQEEYVKD---EQKNLKRELLRAQEEVKRIQSVPLVIGQF 357
           D+ D Y R K        V + EE ++    E + L+++L   + E++++ + P +    
Sbjct: 3   DELDSY-RAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIV 61

Query: 358 MEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 537
           ++++     IV S++G N  V + S I+ + LKP + VAL +  + +V+VLP   D+ + 
Sbjct: 62  LDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVK 121

Query: 538 LLASSEKPNVLYSDIGG 588
                EKPNV YSDIGG
Sbjct: 122 SFEVIEKPNVHYSDIGG 138

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>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
 Frame = +1

Query: 190 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFM 360
           +D+    L S +R +      E+ +KD +K    + ++  +++ ++K +QSV  ++G+ +
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 361 EMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISL 540
           + +     IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D  +  
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYK 138

Query: 541 LASSEKPNVLYSDIGG 588
           ++  +  N+ YSD+GG
Sbjct: 139 MSHEDPGNISYSDVGG 154

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>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +1

Query: 190 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 369
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 370 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 549
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 550 SEKPNVLYSDIGG 588
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137

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>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +1

Query: 190 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 369
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 370 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 549
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 550 SEKPNVLYSDIGG 588
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137

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>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 36/133 (27%), Positives = 70/133 (52%)
 Frame = +1

Query: 190 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 369
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 370 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 549
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D  +  ++ 
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSH 124

Query: 550 SEKPNVLYSDIGG 588
            +  NV YS+IGG
Sbjct: 125 EDPGNVSYSEIGG 137

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>PRS6A_SCHPO (O14126) 26S protease regulatory subunit 6A|
          Length = 438

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 32/153 (20%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           D+L  R + L+  ++ ++ + + +  E+  +  ++   QE++   + +P ++G  +E++D
Sbjct: 37  DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILD 96

Query: 373 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 489
                                G + ++ ++T    ++ ++  +  E L P   + +++ S
Sbjct: 97  MQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDS 156

Query: 490 NALVDVLPPEADSSISLLASSEKPNVLYSDIGG 588
             ++D LP E DS +  +   EKP   YSDIGG
Sbjct: 157 YLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGG 189

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>PRS6A_RAT (Q63569) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Spermatogenic cell/sperm-associated TAT-binding
           protein homolog SATA)
          Length = 439

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 39  EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 98

Query: 373 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 492
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 99  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 158

Query: 493 ALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
            +++ LP E DS +  +   E+P   YSDIGG D
Sbjct: 159 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLD 192

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>PRS6A_HUMAN (P17980) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1) (Proteasome subunit P50)
          Length = 439

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 39  EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 98

Query: 373 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 492
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 99  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 158

Query: 493 ALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
            +++ LP E DS +  +   E+P   YSDIGG D
Sbjct: 159 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLD 192

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>PR6AA_XENLA (O42587) 26S protease regulatory subunit 6A-A (TAT-binding protein|
           6) (TBP-6)
          Length = 405

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 32/154 (20%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +++  R + L   ++ ++ +   V  E + ++ ++    E++K  +++P ++   +E++D
Sbjct: 23  EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLD 82

Query: 373 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 492
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 83  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 142

Query: 493 ALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
            +++ LP E DS +  +   E+P   YSDIGG D
Sbjct: 143 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLD 176

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>PRS6A_MOUSE (O88685) 26S protease regulatory subunit 6A (TAT-binding protein 1)|
           (TBP-1)
          Length = 442

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 32/154 (20%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +++  R + L   ++ ++ +   V  E + +K ++    E++K  +++P ++   +E++D
Sbjct: 42  EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 101

Query: 373 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 492
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 102 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 161

Query: 493 ALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
            +++ LP + DS +  +   E+P   YSDIGG D
Sbjct: 162 LILETLPTDYDSRVKAMEVDERPTEQYSDIGGLD 195

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>PR6AB_XENLA (O42586) 26S protease regulatory subunit 6A-B (TAT-binding protein|
           10) (TBP-10)
          Length = 404

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 32/154 (20%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +++  R + L   ++ ++ +   V  E + ++ ++    E++K  +++P ++   +E++D
Sbjct: 4   EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLD 63

Query: 373 --------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSN 492
                               G   ++ ++T   Y++ ++  ++ E LKP   V +++ S 
Sbjct: 64  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 123

Query: 493 ALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
            +++ LP E DS +  +   E+P   YSDIGG D
Sbjct: 124 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLD 157

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>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 37/165 (22%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
 Frame = +1

Query: 187 DDDDLYGR-LKSLQRHMEFVEIQEEYVKDEQK-------NLKRELLRAQEEVKRIQSVPL 342
           DDD L     +++ R    ++ +   +KDE +       + K ++   QE++K  + +P 
Sbjct: 18  DDDQLASMSTENIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPY 77

Query: 343 VIGQFMEMVD---------------------GNNGIVGSTTGSNYYVRILSTINRELLKP 459
           ++G  +E+++                     G   ++ ++T    ++ ++  ++ E LKP
Sbjct: 78  LVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKP 137

Query: 460 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
              V +++ S  ++D LP E DS +  +   EKP   Y+DIGG +
Sbjct: 138 GDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 182

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>PRS6A_ARATH (O04019) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 419

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 31/155 (20%), Positives = 74/155 (47%), Gaps = 21/155 (13%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           DD+    + L   +  ++ + +    + +++K ++   QE++K  + +P ++G  +E+++
Sbjct: 18  DDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILE 77

Query: 373 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 489
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 78  MSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDS 137

Query: 490 NALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
             ++D LP E DS +  +   EKP   Y+DIGG +
Sbjct: 138 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 172

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>PRS6A_YEAST (P33297) 26S protease regulatory subunit 6A (TAT-binding protein|
           homolog 1) (TBP-1)
          Length = 434

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 32/159 (20%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
 Frame = +1

Query: 196 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD- 372
           +L  R K L   +     + + +  E   +  ++   +E++K  + +P ++   +E++D 
Sbjct: 29  ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDM 88

Query: 373 -------------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVAL 477
                                    G   +V +++    ++ ++  ++ + LKP+  V +
Sbjct: 89  NEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGV 148

Query: 478 HRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
           ++ S  ++D LP E DS +  +   EKP   YSD+GG D
Sbjct: 149 NKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLD 187

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>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/155 (20%), Positives = 72/155 (46%), Gaps = 21/155 (13%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +D+    + L+  +  ++   +    E  + K ++   QE++K  + +P ++G  +E+++
Sbjct: 23  EDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILE 82

Query: 373 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 489
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 83  MNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDS 142

Query: 490 NALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
             ++D LP E DS +  +   EKP   Y+DIGG +
Sbjct: 143 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLE 177

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>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD 372
           +D+    + L   +  ++ + +    E  + K ++   QE++K  + +P ++G  +E+++
Sbjct: 22  EDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILE 81

Query: 373 ---------------------GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHS 489
                                G   ++ ++T    ++ ++  ++ + LKP   V +++ S
Sbjct: 82  MNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDS 141

Query: 490 NALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
             ++D LP E DS +  +   EKP   Y DIGG +
Sbjct: 142 YLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLE 176

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>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 26/104 (25%), Positives = 57/104 (54%)
 Frame = +1

Query: 277 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 456
           ++L++   + + ++K +QS+  +IG+ M+ +     IV +++G  Y V + ++++R  LK
Sbjct: 82  RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLK 141

Query: 457 PSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 588
               V L   +  ++ +LP E D  +  + S E+  + +  IGG
Sbjct: 142 KGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGG 185

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>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding|
           protein homolog)
          Length = 414

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
 Frame = +1

Query: 241 VEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDGNNG 384
           ++ +E  ++D+ +NL+R  L+AQ            EE++++Q     +G+ ++++     
Sbjct: 35  IQEKEIVLRDKIENLRR--LQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKV 92

Query: 385 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPN 564
           ++  +    Y V I  +I  + L P   VAL   S AL  +LP + D  +SL+   + P+
Sbjct: 93  LIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPD 152

Query: 565 VLYSDIGGCD 594
             Y  +GG D
Sbjct: 153 ATYEMVGGLD 162

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>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 58/104 (55%)
 Frame = +1

Query: 277 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 456
           ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++  L 
Sbjct: 33  RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLV 92

Query: 457 PSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGG 588
               V+L   +  ++ +LP E D  +  ++  +  ++ ++ +GG
Sbjct: 93  QGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGG 136

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>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 30/105 (28%), Positives = 53/105 (50%)
 Frame = +1

Query: 280 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 459
           N +  LLR  EE++ +Q     +G+ ++ +  N  +V       Y V I   I+ + +KP
Sbjct: 49  NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKP 106

Query: 460 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
           +  VAL   S  L+ +LP + D  +SL+   + P+  Y  +GG +
Sbjct: 107 NIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLE 151

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>PSMR2_HALSA (Q9HRW6) Proteasome-activating nucleotidase 2 (Proteasome|
           regulatory subunit 2)
          Length = 407

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLV 345
           +D      +L++L+  +  +E + E          E    +++L R   E K+++  PL 
Sbjct: 15  DDSASQQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLF 74

Query: 346 IGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL---LKPSASVALHRHSNALVDVLPP 516
           I    E+ D   G V    G+N     L+ +  EL   L+P + VA++ +S ++V  L  
Sbjct: 75  IATVQELTD--EGAVIKQHGNNQ--EALTEVTDELRATLEPGSRVAVN-NSLSVVRQLDD 129

Query: 517 EADSSISLLASSEKPNVLYSDIGGCD 594
           EAD    ++   + P+V Y DIGG D
Sbjct: 130 EADVRARVMEVDDSPDVGYEDIGGLD 155

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>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)|
          Length = 461

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
 Frame = +1

Query: 193 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSV 336
           D+  G     Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q  
Sbjct: 7   DESRGGTGLRQYYLSKIEDLQLVVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQ 64

Query: 337 PLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 516
              +G+ +  +D    +V       + V +   I+   + P+  VAL   S  L  +LP 
Sbjct: 65  GSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPN 124

Query: 517 EADSSISLLASSEKPNVLYSDIGGCD 594
           + D  +SL+   + P+  Y  IGG D
Sbjct: 125 KVDPLVSLMMVEKVPDSTYEMIGGLD 150

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>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 366
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 547 SSEKPNVLYSDIGGCD 594
             + P+  Y  IGG D
Sbjct: 140 VEKVPDSTYEMIGGLD 155

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>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding
           protein homolog 10) (TBP10)
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 366
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 547 SSEKPNVLYSDIGGCD 594
             + P+  Y  IGG D
Sbjct: 140 VEKVPDSTYEMIGGLD 155

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>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1)
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 366
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 547 SSEKPNVLYSDIGGCD 594
             + P+  Y  IGG D
Sbjct: 140 VEKVPDSTYEMIGGLD 155

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>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 366
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 547 SSEKPNVLYSDIGGCD 594
             + P+  Y  IGG D
Sbjct: 140 VEKVPDSTYEMIGGLD 155

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>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5)
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 366
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+ 
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 547 SSEKPNVLYSDIGGCD 594
             + P+  Y  IGG D
Sbjct: 140 VEKVPDSTYEMIGGLD 155

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>PRS8_DROME (O18413) 26S protease regulatory subunit 8|
          Length = 405

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 30/124 (24%), Positives = 57/124 (45%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 402
           ++H     +Q +     + N K  +LR  EE++ +Q     +G+ ++ +D    +V    
Sbjct: 36  EKHQNLRRLQAQR---NELNAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHP 90

Query: 403 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDI 582
              + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + P+  Y  +
Sbjct: 91  EGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV 150

Query: 583 GGCD 594
           GG D
Sbjct: 151 GGLD 154

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>PSMR1_HALSA (Q9HNP9) Proteasome-activating nucleotidase 1 (Proteasome|
           regulatory subunit 1)
          Length = 411

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
 Frame = +1

Query: 208 RLKSLQRH-MEFVEIQEEY------VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 366
           RL +LQ H ++ V +  E       V+  ++ L+ E+ R Q E + +++  L +    ++
Sbjct: 24  RLNALQDHYVDIVAVNGELQAQLDDVEARREELREEVNRLQRENETLKTASLYLATVEDL 83

Query: 367 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 546
            +  + ++     +   +  LS    + L+    VA++  S ++  VL  E D+    + 
Sbjct: 84  PEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAIN-DSFSVQRVLDDETDARAQAME 142

Query: 547 SSEKPNVLYSDIGGCD 594
             E P+V Y+DIGG D
Sbjct: 143 VDESPSVTYADIGGLD 158

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>PRS8_DICDI (P34124) 26S protease regulatory subunit 8 (TAT-binding protein|
           homolog 10) (Fragment)
          Length = 389

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/108 (23%), Positives = 50/108 (46%)
 Frame = +1

Query: 271 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 450
           ++  L   +   +EE++ + +    + + ++++  N  +V       + V I  T++   
Sbjct: 30  QRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAK 89

Query: 451 LKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
           L PS   AL   S  L  +LP + D  +SL+   + P+  Y  +GG D
Sbjct: 90  LTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLD 137

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>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog|
          Length = 438

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
 Frame = +1

Query: 304 AQEEVKRIQSVPLVIGQFMEMVDG------NNGIVGSTTGSNYYVRILSTINRELLKPSA 465
           A +  +  +  PL + +  ++++       N  ++     + + V +   ++   ++   
Sbjct: 83  AADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGM 142

Query: 466 SVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
            V   R+  A+   LPP+ D S++++   EKP+V Y D+GGC
Sbjct: 143 RVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGC 184

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>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 425

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +1

Query: 337 PLVIGQFMEMVDGNNG----IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVD 504
           PL + +  ++++ N+     ++     + + V +   ++   ++    V + R+   +  
Sbjct: 84  PLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 143

Query: 505 VLPPEADSSISLLASSEKPNVLYSDIGGC 591
            LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 144 PLPPKIDPSVTMMTVEEKPDVTYNDVGGC 172

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>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)|
           (TAT-binding homolog 3)
          Length = 467

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 508 LPPEADSSISLLASSEKPNVLYSDIGGC 591
           LPP  D S++++   EKP+V YSD+GGC
Sbjct: 187 LPPRIDPSVTMMTVEEKPDVTYSDVGGC 214

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>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173

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>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory
           particle triple-A ATPase subunit 1)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173

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>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit|
           7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory
           particle triple-A ATPase subunit 1a)
          Length = 426

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D S++++   EKP+V Y+D+GGC
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGC 173

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>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 433

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 140 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180

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>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179

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>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179

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>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)|
          Length = 432

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 469 VALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGC 591
           V + R+   +   LPP+ D +++++   EKP+V YSD+GGC
Sbjct: 139 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 179

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>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)|
          Length = 402

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 26/105 (24%), Positives = 49/105 (46%)
 Frame = +1

Query: 280 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 459
           N K  +LR  EE++ +Q     +G+ ++ +D    +V       + V +   ++   +  
Sbjct: 49  NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTA 106

Query: 460 SASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIGGCD 594
           +  VAL   S  L  +LP + D  +SL+   + P+  Y  +GG D
Sbjct: 107 NCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLD 151

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>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7|
          Length = 435

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +1

Query: 406 SNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSEKPNVLYSDIG 585
           + + V +  ++    ++    V + R+   +   LP + D +++++   EKP+V YSD+G
Sbjct: 121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVG 180

Query: 586 GC 591
           GC
Sbjct: 181 GC 182

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>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +1

Query: 187  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 297
            D D L  ++K L+  ++  +++++++K+E K LK+EL
Sbjct: 1437 DADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKEL 1473

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>HDA4_CAEEL (O17323) Histone deacetylase 4 (Histone deacetylase 7) (CeHDA-7)|
          Length = 816

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
 Frame = +1

Query: 196 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 375
           DL G  +  Q+ +    +   Y   +Q+   + L   +  V      PL+I Q     D 
Sbjct: 2   DLIGHFQRAQQELSVQHMHNLYAALQQQQQLQNLQTERSAVN-----PLLISQQHSTEDQ 56

Query: 376 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHR----HSNALVDVLPPEADSSISLL 543
           N+G     + +N    +LS+ N  L  P      H      SN   D LP    ++IS L
Sbjct: 57  NSGPAAPLSLANSLTNLLSSSNGNLSVPQTPTKEHHPTAPTSNRKCD-LPRSNSTTISQL 115

Query: 544 ASSEKPNVL 570
                 N++
Sbjct: 116 TKDRLKNMI 124

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>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +1

Query: 187  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE--VKRIQS 333
            D  D+ GR+++L+  +   +     +K EQK  ++E L+AQE   +K+++S
Sbjct: 2046 DQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLES 2096

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>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 217 SLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 378
           +L++ + F+E Q    K+ +KNL+ EL RA E +  +      + + +E+ + +
Sbjct: 556 TLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFALAKELELANSH 609

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>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +1

Query: 208 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD 372
           ++  +Q   + +E + E +KDE  +LK +L   + EVKR+Q   V  + G+ +E+VD
Sbjct: 244 KVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKGEGVEIVD 300

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>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +1

Query: 241 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 327
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 416 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 444

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>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 193  DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKR 324
            D+L+ +L + ++   FVE Q   ++ E +NL R + +A+ + K+
Sbjct: 1090 DELHHQLSTSRQRRSFVEKQLTLIESEAENLTRRIRKAERDYKQ 1133

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>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 333
           E +++L  +++ LQR +E         +  +  LK+ELLR QEE+K +Q+
Sbjct: 592 EMEEELGEKIEVLQRELEQARASAGDTRQVEV-LKKELLRTQEELKELQA 640

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>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +1

Query: 241 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 327
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 417 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 445

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>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 214 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 363
           K  Q  +E  +++E+  K+E+K L+ E  R +EE KRI++    I +F +
Sbjct: 381 KERQEALE-AKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKAEITRFFQ 429

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>FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)|
          Length = 271

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 235 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG-NNGIVGSTTGSN 411
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G   G  GST+G++
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTGSTSGTS 190

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>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 184 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 297
           E  DDL  ++ SL+  +E +E QEE V+++ + L+ EL
Sbjct: 71  EAQDDLEEKVNSLEVRVETLEKQEERVQEQFEELQSEL 108

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>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 223 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 336
           +R  EF+  QEE +K +++  K E+ R  EE+K I+S+
Sbjct: 173 ERLKEFLS-QEEQIKRQKEEKKAEIERISEEIKSIESL 209

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>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 226 RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVI 348
           R  EF+++ E Y +D +  LKR+ L   E+ + ++S+ ++I
Sbjct: 301 RGTEFIKVPETYYEDMKIRLKRQGLVLDEDFETLKSLDILI 341

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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +1

Query: 193  DDLYGRLKSLQ-------RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 351
            DDL   LKSL+       ++    E     ++ E +NL +EL   QE    +Q   L I 
Sbjct: 956  DDLTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIK 1015

Query: 352  QFMEMVDGN 378
              +E +DG+
Sbjct: 1016 LKLEQIDGH 1024

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>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 187  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 297
            D D L  ++K L+  +   +++++++K+E + LK+EL
Sbjct: 1351 DPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 1387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,380,791
Number of Sequences: 219361
Number of extensions: 457130
Number of successful extensions: 2304
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result