ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12e04 |
|---|---|
| Clone Library Name | barley_pub |
>DPYD_CAEEL (Q18164) Probable dihydropyrimidine dehydrogenase [NADP+] (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1059 Score = 111 bits (277), Expect = 2e-24 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 5/138 (3%) Frame = +3 Query: 171 EPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPR 350 E D+SV + G+K NPF + S PP T+ + +RAF++GWG ++ KT LD V NV+PR Sbjct: 544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPR 603 Query: 351 YARLRADPNGSTKSPIIG-----WQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIME 515 R GST P+ G + NIELIS++ E L ++LK+++P +I+I SIM Sbjct: 604 IVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVIASIMC 657 Query: 516 EYNKAAWHELIERVEESG 569 YNKA W EL + EE+G Sbjct: 658 VYNKADWIELATKSEEAG 675
>YEIA_ECOLI (P25889) Hypothetical protein yeiA| Length = 411 Score = 105 bits (262), Expect = 9e-23 Identities = 55/131 (41%), Positives = 80/131 (61%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYA 356 DLS+T G+K PNPF + S P G Y + +A+D GWGGV+ KT+ V+PR+ Sbjct: 5 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIAN--EVSPRFD 62 Query: 357 RLRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYNKAAW 536 L + G IG++N+E I++ PLE L ++LK++YPD++LI SIM E N+ W Sbjct: 63 HLVKEDTG-----FIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGE-NEQQW 116 Query: 537 HELIERVEESG 569 EL V+E+G Sbjct: 117 EELARLVQEAG 127
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 103 bits (256), Expect = 5e-22 Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 5/136 (3%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYA 356 D+SV + GLK NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR Sbjct: 532 DISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRII 591 Query: 357 RLRADPNGSTKSPIIG-----WQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEY 521 R G+T P+ G + NIELIS++ +LK ++PD I+I SIM Y Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645 Query: 522 NKAAWHELIERVEESG 569 NK W EL ++ E+SG Sbjct: 646 NKNDWTELAKKSEDSG 661
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 101 bits (252), Expect = 1e-21 Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 5/136 (3%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYA 356 D+SV + GLK NPF + S P T+ ++++RAF+ GWG + KT SLD V NV+PR Sbjct: 532 DISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIV 591 Query: 357 RLRADPNGSTKSPIIG-----WQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEY 521 R G+T P+ G + NIELIS++ +LK ++PD I+I SIM Y Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645 Query: 522 NKAAWHELIERVEESG 569 NK W EL + E SG Sbjct: 646 NKNDWMELSRKAEASG 661
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 96.3 bits (238), Expect = 6e-20 Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 5/136 (3%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYA 356 D+SV + LK NPF + S P T+ ++++RAF+ GW + KT SLD V NV+PR Sbjct: 532 DISVEMAALKFTNPFGLASATPTTSSSMIRRAFEAGWAFALTKTFSLDKDIVTNVSPRII 591 Query: 357 RLRADPNGSTKSPIIG-----WQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEY 521 R G+T P+ G + NIELIS++ +LK ++PD I+I SIM Y Sbjct: 592 R------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSY 645 Query: 522 NKAAWHELIERVEESG 569 N+ W EL + E SG Sbjct: 646 NRNDWMELSRKAEASG 661
>PYRD_PYRAB (Q9V0Y6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 303 Score = 43.1 bits (100), Expect = 6e-04 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 L V + G+K NP ++ SG +++RA EG GGV+ K++ ++ K P Sbjct: 6 LEVNLFGIKFKNPLILASGVVDMTPELLRRAHREGAGGVVTKSIGMEPRKGYE-NPTIVE 64 Query: 360 LRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRI-LIGSIMEEY 521 L + P GW E L EF++ K ++P + + G EE+ Sbjct: 65 LPYGLINAMGLPNPGW-----------EAFLEEFRKEKFDFPVIVSIFGGTPEEF 108
>PYRD_PYRHO (O59185) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 303 Score = 40.4 bits (93), Expect = 0.004 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 L V + G++ NP ++ SG +++RA +EG GGV+ K++ + K + P Sbjct: 6 LEVKLFGIRFENPLILASGVVDMTPELLRRAHNEGAGGVVTKSIGKEPRKGYD-NPTIVE 64 Query: 360 LRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRI-LIGSIMEEY 521 L + P GW E LNEF + ++P + + G EE+ Sbjct: 65 LPYGLINAMGLPNPGW-----------EAFLNEFIDERFDFPVIVSIFGGTPEEF 108
>PYRD_THEVO (Q979G6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 301 Score = 39.3 bits (90), Expect = 0.008 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDA--GKVINVTPR 350 D+S T+ G+K+ NPF++ SG N MK + G V+ K++ + G V Sbjct: 3 DISTTLAGIKLVNPFMVASGILDENGYTMKELLERGAAAVVTKSIGISERDGYPTPVIVE 62 Query: 351 YARLRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYNKA 530 Y G + +G +S+ +E E K+ R +IGS+ YN Sbjct: 63 Y--------GDSLINAVG------LSNPGIENFGEEINIAKE--AKRPIIGSVF-AYNAE 105 Query: 531 AWHELIERVEESGV 572 + +L ++EE GV Sbjct: 106 EFTKLSVKMEEYGV 119
>PYRD_PYRFU (Q8U0P6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 300 Score = 37.0 bits (84), Expect = 0.040 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 + + + G+ NP ++ SG +++RA EG GGV+ K++ ++ K + P Sbjct: 3 IKIELFGITFENPLILASGVVDMTPELLRRAHKEGAGGVVTKSIGIEPRKGYD-NPTVVE 61 Query: 360 LRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRI-LIGSIMEEYNKAAW 536 + + P GW + L EF++ ++P + + G EE+ A Sbjct: 62 VPCGLINAMGLPNPGW-----------KAFLEEFEKESFDFPVIVSIFGGNPEEF--AFL 108 Query: 537 HELIERVEES 566 E +ERV ++ Sbjct: 109 AEKLERVGDA 118
>PYRD_PYRKO (Q5JHR7) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 302 Score = 36.6 bits (83), Expect = 0.052 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGK 329 LS+ ++GL+ NP ++ SG RA +EG GGV+ K++ ++ K Sbjct: 6 LSINLSGLEFENPLILASGINDKVPEQWIRAHEEGAGGVVTKSIGIEPRK 55
>CT152_MACFA (Q95JR6) Protein C20orf152 homolog| Length = 585 Score = 33.1 bits (74), Expect = 0.58 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +3 Query: 405 WQNIELISDRPLETMLNEFKQLKK 476 WQ++ELI DRPL+T L E+ +++ Sbjct: 307 WQHLELIDDRPLKTHLREYSPMER 330
>PYRD_THEAC (Q9HL35) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 300 Score = 32.3 bits (72), Expect = 0.98 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLD 320 DLS +V G+++ NP ++ SG N M + G V+ K++ ++ Sbjct: 3 DLSTSVAGIRLENPLMLASGILDENGYTMLDVMNNGAAAVVTKSIGME 50
>SIPA_SALTY (Q56027) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Frame = +3 Query: 171 EPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPR 350 + D + +GLK + + P TN M E + GVI K + D V Sbjct: 508 QTDKTGPFSGLKFKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRRA 567 Query: 351 YARLRAD--PNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYN 524 + LRA+ PN + KS + Q ++ L+ + K++ +P + + I ++ Sbjct: 568 FDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFA 627 Query: 525 KAA 533 + A Sbjct: 628 REA 630
>SIPA_SALEN (Q8VQB5) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Frame = +3 Query: 171 EPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPR 350 + D + +GLK + + P TN M E + GVI K + D V Sbjct: 508 QTDKTGPFSGLKFKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRRA 567 Query: 351 YARLRAD--PNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYN 524 + LRA+ PN + KS + Q ++ L+ + K++ +P + + I ++ Sbjct: 568 FDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFA 627 Query: 525 KAA 533 + A Sbjct: 628 REA 630
>PYRD_METJA (Q58070) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 306 Score = 32.0 bits (71), Expect = 1.3 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 L + G++ NP + SG G + +KR G G V K++ L Sbjct: 6 LKTNICGIEFKNPVFLASGIMGETGSALKRIAKGGAGAVTTKSIGL-------------- 51 Query: 360 LRADPNGSTKSPII-----GWQNIELISDRPLETMLNEFKQLKKEY--PDRILIGSI 509 +PN K+P I G+ N + + ++ L E ++++ E D +IGSI Sbjct: 52 ---NPNPGHKNPTIVEVYGGFLNAMGLPNPGVDEYLEEIEKVRDELNRMDVRIIGSI 105
>TIG_MYCLE (Q9CBY2) Trigger factor (TF)| Length = 469 Score = 31.2 bits (69), Expect = 2.2 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIA----KTVSLDAGKVINVT 344 DLS T+NG K+PN + G ++ V G+G +IA V L AG+ T Sbjct: 168 DLSATINGEKVPN-----ADAEGLSHEV-------GYGRLIAGLDDALVGLSAGESRVFT 215 Query: 345 PRYARLRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRI-LIGSIMEEY 521 +L + + +I ++ + +R L +EF QL E+ L ++ ++ Sbjct: 216 ---TQLATSKHAGQDAEVI--VTVKSVKERELPEPDDEFAQLVSEFDTMAELRANLGDQV 270 Query: 522 NKAAWHELIERVEESGV 572 KA + + E++ ++ V Sbjct: 271 RKAKYAQQAEKIRDAAV 287
>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 31.2 bits (69), Expect = 2.2 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Frame = +3 Query: 171 EPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPR 350 + D + +GLK + + P TN + E + GVI K + DA V Sbjct: 508 QTDKTGPFSGLKFKQNSFLSTVPSVTNMHSIHFNAREAFLGVIRKALEPDASTPFPVRRA 567 Query: 351 YARLRAD--PNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYN 524 + LR + PN + KS + Q ++ L+ + K++ +P + + I ++ Sbjct: 568 FDGLRGEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFA 627 Query: 525 KAA 533 + A Sbjct: 628 REA 630
>PME_PETIN (Q43043) Pectinesterase precursor (EC 3.1.1.11) (Pectin| methylesterase) (PE) Length = 374 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = -3 Query: 458 LVKHCLERSITDKFNVLPSNDRTLGRPIRIRPEPSIARSYIDNFSSIQG 312 ++++C + TD F++ P + LGRP + I +SYID F +G Sbjct: 250 VLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEG 298
>ARLY_STAES (Q8CT81) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 13/51 (25%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = +3 Query: 420 LISDRPLETMLNEFKQLKKEYPD-RILIGSIMEEYNKAAWHELIERVEESG 569 +I+D ++++NE K ++ ++ + ++ + +E+ + HELI+R+ E+G Sbjct: 51 IITDDEAQSIINELKNIQSDFEEGKLKFKASLEDIHLNIEHELIQRIGEAG 101
>ARLY_STAEQ (Q5HQK1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 13/51 (25%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = +3 Query: 420 LISDRPLETMLNEFKQLKKEYPD-RILIGSIMEEYNKAAWHELIERVEESG 569 +I+D ++++NE K ++ ++ + ++ + +E+ + HELI+R+ E+G Sbjct: 51 IITDDEAQSIINELKNIQSDFEEGKLKFKASLEDIHLNIEHELIQRIGEAG 101
>PYRD_LACPL (P77887) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 305 Score = 30.8 bits (68), Expect = 2.9 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 L+V + G+ NP + SG + ++ GG++ K+ + + P+ Sbjct: 4 LTVNLAGVTFKNPVMPASGTAAYGQQMAQQLDLSALGGLVIKSTTAE--------PK--- 52 Query: 360 LRADPNGSTKSPIIGWQNIELISDRPLETML-NEFKQLKKEYPDRILIGSI 509 +P +T GW N + + ++ +L ++ L YPD +IGS+ Sbjct: 53 -AGNPRPTTAETTAGWLNAIGLKNPGIDNVLADKLPWLATHYPDLPIIGSV 102
>CT152_HUMAN (Q96M20) Protein C20orf152| Length = 576 Score = 30.8 bits (68), Expect = 2.9 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +3 Query: 405 WQNIELISDRPLETMLNEFKQLKK 476 WQ++ELI RPL+T L+E+ +++ Sbjct: 307 WQHLELIDGRPLKTHLSEYSPMER 330
>PYRD_METMA (Q8PW56) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGW-GGVIAKTV 311 L T+ GLK+ NP ++ +G GT + R EG G V+ K++ Sbjct: 13 LMYTLTGLKLKNPTILAAGVLGTTGASLCRVAREGGAGAVVTKSI 57
>YA55_SCHPO (Q09735) Putative aminopeptidase C13A11.05 in chromosome I (EC| 3.4.11.-) Length = 513 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +3 Query: 252 YTVMKRAFDEGWGGVIAKTVSLDAGKV-INVTPRYARLRADPNGS 383 Y +++ D+GW G++ K V+ D+G + I + +RAD G+ Sbjct: 263 YIGKEKSKDDGWLGLVGKGVTFDSGGISIKPSQNMKEMRADMGGA 307
>RL32_PYRAB (Q9V1V2) 50S ribosomal protein L32e| Length = 130 Score = 30.0 bits (66), Expect = 4.9 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = +3 Query: 354 ARLRADPNGSTKSPIIGWQNIELISDRPL------ETMLNEFKQLKKEYPDRILIGSIME 515 +++R G +SP IGW + L+ R L E +++ K+L+K P R I Sbjct: 48 SKMRLKLKGKPRSPSIGWSSPRLV--RGLHPSGYEEVLIHNVKELEKLDPKR-QAARIAH 104 Query: 516 EYNKAAWHELIERVEESGV 572 K E+++R +E G+ Sbjct: 105 TVGKKKRIEILKRAQELGI 123
>ACADV_BOVIN (P48818) Very-long-chain specific acyl-CoA dehydrogenase,| mitochondrial precursor (EC 1.3.99.-) (VLCAD) Length = 655 Score = 30.0 bits (66), Expect = 4.9 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Frame = +3 Query: 375 NGSTKSPIIGWQNIELISDR--PLETMLNEFK-QLKKEYPDRILIGSI---MEEYNKAAW 536 N +KS +G +L +D+ P ++LNE + Q KE L+G + EE N AA Sbjct: 67 NSVSKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKE-----LVGPVTRFFEEVNDAAK 121 Query: 537 HELIERVEES 566 ++++ERVEE+ Sbjct: 122 NDMLERVEET 131
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 30.0 bits (66), Expect = 4.9 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 4/105 (3%) Frame = -1 Query: 529 ALLYSSIIEPMSILSGYSFFSCLNSLSIVSRGRSLISSMFCHPMIGLLVDPLGSALSRA* 350 A Y S +P+ G + F + S++ + S HP G+LV+ L Sbjct: 149 AFTYRSQFKPLHEFFGRALFLSSIATSLLGLTEKMFSEYSSHPAEGILVNSL-------- 200 Query: 349 RGVTLITFPASKDTVLA----MTPPQPSSKARFMTV*LVPGGPEP 227 GV L+ F A +L PP P +A M + G P Sbjct: 201 -GVLLVVFGAVIAYILTREDWRRPPLPEEQALSMDFKTLTEGDSP 244
>PYRD_AQUAE (O66461) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 306 Score = 30.0 bits (66), Expect = 4.9 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 10/133 (7%) Frame = +3 Query: 177 DLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYA 356 DLSV + G++ NP + SG G + G V+ K +SL ++ N TPR Sbjct: 2 DLSVELFGIRFKNPVWVASGTFGYGVEAAEIYDISKLGAVVTKGLSLKE-RLGNETPRIV 60 Query: 357 RLRADPNGSTKSPIIGWQN----------IELISDRPLETMLNEFKQLKKEYPDRILIGS 506 P G S IG QN I D + N F + ++EY + + Sbjct: 61 E---TPCGMLNS--IGLQNPGVEKFLKEIYPKIKDVDTHFIANVFGETEEEY---VEVCM 112 Query: 507 IMEEYNKAAWHEL 545 +E+ +K +EL Sbjct: 113 ALEDADKIVAYEL 125
>RL32_PYRHO (O59435) 50S ribosomal protein L32e| Length = 130 Score = 29.6 bits (65), Expect = 6.4 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = +3 Query: 354 ARLRADPNGSTKSPIIGWQNIELISDRPL------ETMLNEFKQLKKEYPDRILIGSIME 515 +++R G +SP IGW + L+ R L E +++ K+L++ P R I Sbjct: 48 SKMRLKLKGKPRSPSIGWSSPRLV--RGLHPSGYEEVLIHNVKELERLDPRR-QAARIAH 104 Query: 516 EYNKAAWHELIERVEESGV 572 K E+++R EE G+ Sbjct: 105 TVGKKKRIEILKRAEELGI 123
>RL32_PYRFU (Q9HH82) 50S ribosomal protein L32e (PfeL32)| Length = 130 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = +3 Query: 354 ARLRADPNGSTKSPIIGWQNIELISDRPL------ETMLNEFKQLKKEYPDRILIGSIME 515 +++R G +SP IGW + +L+ R L E +++ K+L+ P R I Sbjct: 48 SKMRLKLKGKPRSPSIGWSSPKLV--RGLHPSGYEEVLVHNVKELEALDPKR-QAARIAH 104 Query: 516 EYNKAAWHELIERVEESGV 572 K E+I+R EE G+ Sbjct: 105 TVGKKKRIEIIKRAEELGI 123
>IDH_THET8 (P33197) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 496 Score = 29.3 bits (64), Expect = 8.3 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 7/114 (6%) Frame = +3 Query: 243 GTNYTVMKRAFDEGWGGV-------IAKTVSLDAGKVINVTPRYARLRADPNGSTKSPII 401 G + V++ ++ + G+ +A+T+ L + K R+A A G K Sbjct: 130 GIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCA 189 Query: 402 GWQNIELISDRPLETMLNEFKQLKKEYPDRILIGSIMEEYNKAAWHELIERVEE 563 NI +++ T+ F+Q+ +EYPD + I++ A H+L++R E+ Sbjct: 190 TKSNIMKLAEG---TLKRAFEQVAQEYPDIEAVHIIVDN----AAHQLVKRPEQ 236
>PGK_METTH (O27121) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 411 Score = 29.3 bits (64), Expect = 8.3 Identities = 24/107 (22%), Positives = 44/107 (41%) Frame = +3 Query: 180 LSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAGKVINVTPRYAR 359 L + ++ P +V+G + VMK + G ++ T G V N+ Sbjct: 192 LQGALENVERPCVYVLGGVKVDDSIMVMKNVLENGSADLVLTT-----GLVANIFLAGCG 246 Query: 360 LRADPNGSTKSPIIGWQNIELISDRPLETMLNEFKQLKKEYPDRILI 500 ++ IG N++ I R + K+LKK +P+RI++ Sbjct: 247 VK-----------IGKVNMDFIKSRGYCDFIKVAKKLKKRFPERIVV 282
>FLAC_METJA (Q58304) Putative flagella-related protein C| Length = 141 Score = 29.3 bits (64), Expect = 8.3 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 390 SPIIGWQNIELISDRPLETMLNEFKQLKKEYP----DRILIGSIMEEYNKAAWHELIERV 557 +P IG I S LE + E+K+LKK D I++GS+ E+IE V Sbjct: 61 NPFIGVSKITATSLEKLERLETEYKRLKKTVEELTNDLIILGSLYLHQLDINLDEIIEEV 120 Query: 558 EESGV 572 E + Sbjct: 121 LEEEI 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,071,473 Number of Sequences: 219361 Number of extensions: 1029172 Number of successful extensions: 3577 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3572 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
