ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12d07 |
|---|---|
| Clone Library Name | barley_pub |
>C90D2_ORYSA (Q94IW5) Cytochrome P450 90D2 (EC 1.14.-.-) (C6-oxidase)| Length = 490 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Frame = +3 Query: 42 QEFVVGARSLPAGRPGRSVHGN------MASLLFRLVRASLNLSKQIQYPARKPRRNLPT 203 QEF+VG SLP PG ++ + MA L+ R++R K+ + A P R+ Sbjct: 220 QEFIVGLMSLPIKLPGTRLYRSLQAKKKMARLIQRIIR-----EKRARRAAASPPRDAID 274 Query: 204 VLGGD 218 VL GD Sbjct: 275 VLIGD 279
>CXB4_MOUSE (Q02738) Gap junction beta-4 protein (Connexin-30.3) (Cx30.3)| Length = 266 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 258 YIISTICEFAVSIGLLWTLWC-YFTYDSPRVFSARLTP 368 Y++S I + AV G L+ C Y YD PRV + +TP Sbjct: 131 YLLSLIFKAAVDSGFLYIFHCIYKDYDMPRVVACSVTP 168
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 171 PARKPRRNLPTVLGGDFIKRPALKLNCPRYIISTI 275 P R+P R+ P + G F R AL L PR +ST+ Sbjct: 3122 PRRQPPRDYPGAMAGRFGSRDALDLGAPREWLSTL 3156
>BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 226 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Frame = -1 Query: 449 QDDVQGGPVAGGRHRGRSPYAAVPRDRRRQAGGKHARRVVGE----VAPQRP*QADRHGE 282 Q+ GP AGG + AA P + A G+ + GE AP P + + Sbjct: 105 QEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSD 164 Query: 281 FADGGDDVPGAVE 243 A D PG+ E Sbjct: 165 GAPASDSKPGSSE 177
>WIS1_SCHPO (P33886) Protein kinase wis1 (EC 2.7.12.2) (Protein kinase sty2)| Length = 605 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = +3 Query: 63 RSLPAGRPGRSVHGNMASLLFRLVRASLNLSKQIQYPARKPRRNLPTVLGGDFIKRP 233 R++P R GRS R SLNL ++ P+ KPRR+LPT G + I P Sbjct: 84 RAVPTVRLGRSTSSRS--------RNSLNLD--MKDPSEKPRRSLPTAAGQNNIGSP 130
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 171 PARKPRRNLPTVLGGDFIKRPALKLNCPRYIISTI 275 P R+P R+ P + G F R AL L PR +ST+ Sbjct: 3115 PRRQPPRDYPGTMAGRFGSRDALDLGAPREWLSTL 3149
>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Multiple epidermal growth factor-like domains 2) Length = 3313 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 171 PARKPRRNLPTVLGGDFIKRPALKLNCPRYIISTI 275 P R+P R+ P + G F R AL L PR +ST+ Sbjct: 3123 PRRQPPRDYPGTMAGRFGSRDALDLGAPREWLSTL 3157
>CCNBL_ARATH (P30183) G2/mitotic-specific cyclin (B-like cyclin)| Length = 428 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = -1 Query: 224 DEVAAKDGRKIASGLPRRVLYLLGQIQRGSH---ESEEKRCHVAVYRSSRP 81 D+V DG+ +A G R+VL +G + RG++ EK H RS P Sbjct: 14 DDVVVVDGKNVAKGRNRQVLGDIGNVVRGNYPKNNEPEKINHRPRTRSQNP 64
>IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] Length = 1373 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 278 ADGGDDVPGAVEFERRPLDEVAAK-DGRKIASGLPRRVLYLLGQIQRGSHESEEKRC 111 A+G DD+PG V +E RP + + K + +G L L+ +I+ GS +++ C Sbjct: 829 AEGADDIPGPVTWEPRPENSIFLKWPEPENPNG-----LILMYEIKYGSQVEDQREC 880
>IGF1R_HUMAN (P08069) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) (CD221 antigen) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 recepto Length = 1367 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 278 ADGGDDVPGAVEFERRPLDEVAAK-DGRKIASGLPRRVLYLLGQIQRGSHESEEKRC 111 A+G DD+PG V +E RP + + K + +G L L+ +I+ GS +++ C Sbjct: 828 AEGADDIPGPVTWEPRPENSIFLKWPEPENPNG-----LILMYEIKYGSQVEDQREC 879
>LDH3_BACCR (Q815X8) L-lactate dehydrogenase 3 (EC 1.1.1.27) (L-LDH 3)| Length = 316 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 372 IPRNGSVGAPAAMASTRHRAALDVVLHASDRRATG-SCYHHGEGAVTYGGYTVASGR 539 +PRN +G ++ S+R R L +LH R G S HG+ + + G+ Sbjct: 138 LPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGK 194
>LDH3_BACC1 (P62049) L-lactate dehydrogenase 3 (EC 1.1.1.27) (L-LDH 3)| Length = 316 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 372 IPRNGSVGAPAAMASTRHRAALDVVLHASDRRATG-SCYHHGEGAVTYGGYTVASGR 539 +PRN +G ++ S+R R L +LH R G S HG+ + + G+ Sbjct: 138 LPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGK 194
>LDH3_BACAN (Q81XJ7) L-lactate dehydrogenase 3 (EC 1.1.1.27) (L-LDH 3)| Length = 316 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 372 IPRNGSVGAPAAMASTRHRAALDVVLHASDRRATG-SCYHHGEGAVTYGGYTVASGR 539 +PRN +G ++ S+R R L +LH R G S HG+ + + G+ Sbjct: 138 LPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGK 194
>IGF1R_PIG (Q29000) Insulin-like growth factor 1 receptor (EC 2.7.10.1)| (Insulin-like growth factor I receptor) (IGF-I receptor) (Fragments) Length = 304 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 278 ADGGDDVPGAVEFERRPLDEVAAK-DGRKIASGLPRRVLYLLGQIQRGSHESEEKRC 111 A+G DD+PG V +E RP + + K + +G L L+ +I+ GS +++ C Sbjct: 43 AEGADDIPGPVTWEPRPENSIFLKWPEPENPNG-----LILMYEIKYGSQVEDQREC 94
>IGF1R_BOVIN (Q05688) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] (F Length = 640 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 278 ADGGDDVPGAVEFERRPLDEVAAK-DGRKIASGLPRRVLYLLGQIQRGSHESEEKRC 111 A+G DD+PG V +E RP + + K + +G L L+ +I+ GS +++ C Sbjct: 101 AEGADDIPGPVTWEPRPENSIFLKWPEPENPNG-----LILMYEIKYGSQVEDQREC 152
>IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precursor (EC| 2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I receptor) [Contains: Insulin-like growth factor 1 receptor alpha chain; Insulin-like growth factor 1 receptor beta chain] Length = 1370 Score = 30.0 bits (66), Expect = 5.0 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 278 ADGGDDVPGAVEFERRPLDEVAAK-DGRKIASGLPRRVLYLLGQIQRGSHESEEKRC 111 A+G DD+PG V +E RP + + K + +G L L+ +I+ GS +++ C Sbjct: 829 AEGADDIPGPVTWEPRPENSIFLKWPEPENPNG-----LILMYEIKYGSQVEDQREC 880
>HUTH_CHRVO (Q7P188) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 510 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +3 Query: 345 VFSARLTPAIPRNGSVGAPAAMASTRHRAAL 437 +F+ ++ P IP+ GSVGA +A H +A+ Sbjct: 127 LFNRQIYPVIPQKGSVGASGDLAPLSHMSAV 157
>MICA1_MOUSE (Q8VDP3) NEDD9-interacting protein with calponin homology and LIM| domains (Molecule interacting with CasL protein 1) Length = 1048 Score = 29.3 bits (64), Expect = 8.5 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +2 Query: 68 PTGRPAGKIGTRQHGISSLPTRASLVESVQANTVPGEEAPTQSSDRPWRRLHQEAGAQ 241 P+G P+ + + S TRA + E + P P+ S + P HQEAGA+ Sbjct: 623 PSGTPSAILFLGKLQRSLQRTRAKVDEETPSTEEPPVSEPSMSPNTPELSEHQEAGAE 680 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,290,043 Number of Sequences: 219361 Number of extensions: 1303315 Number of successful extensions: 4407 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4282 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4404 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
