Clone Name | bart12c07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004N19, full insert sequence Length = 1343 Score = 264 bits (133), Expect = 3e-67 Identities = 271/317 (85%) Strand = Plus / Plus Query: 163 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggctgccgaggcc 222 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 212 cccgtcctcgccttccgcgacgccgcgagctggcgcgccgcgtgggaggccgccgaggcc 271 Query: 223 agcctcttctcccagtgcgaggctggtgcacgctctggctgttcaatcaccgcgacacgg 282 |||||| | || || ||||||||||| ||||| ||||| |||||||| || || |||| Sbjct: 272 agcctcctgtcgcaatgcgaggctggggcacggtctgggtgttcaattactgcatcacgc 331 Query: 283 aaatgcaagcccccctggtggaaaggtttgtttggaggtgcaacaaccgactatcaagaa 342 ||||||||||| ||||||||||||||||| || ||||| ||| |||| |||||||||||| Sbjct: 332 aaatgcaagccaccctggtggaaaggtttattgggaggagcaccaactgactatcaagaa 391 Query: 343 agagaacgatgcgaagaacgagagatggcttcttgtcttgaatcagcaaaggaggcatgc 402 ||||| |||| ||||| || |||||||| ||||||||||| |||||| || || || Sbjct: 392 agagagagatgtgaagagcgtgagatggccgcttgtcttgaagcagcaagagaagcttgt 451 Query: 403 attaagttttcaaagcaaaaatgtgatgcaccattccgagatgcaaggattgcctctgaa 462 |||||||| | ||| ||||||| || ||| |||||||||||||||||||| ||||| Sbjct: 452 gttaagtttgccaaggaaaaatgcattgaacccttccgagatgcaaggattgcttctgag 511 Query: 463 ggtctccttgaaaatac 479 ||||| ||||||||||| Sbjct: 512 ggtcttcttgaaaatac 528 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 58 tcggaggactactccccggcggccaccgtcgtccccttcaacccgccgctccctctgctt 117 ||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || || Sbjct: 113 tcggaggactactccccggcggccaccgtggtccgcttcgacccgccgctcccgctcctc 172 Query: 118 cgcgcgccagtccc 131 || ||||| ||||| Sbjct: 173 cgtgcgcccgtccc 186
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 163 bits (82), Expect = 8e-37 Identities = 199/238 (83%) Strand = Plus / Plus Query: 242 aggctggtgcacgctctggctgttcaatcaccgcgacacggaaatgcaagcccccctggt 301 ||||||| ||||| ||||| |||||||| || || |||| ||||||||||| ||||||| Sbjct: 140770 aggctggggcacggtctgggtgttcaattactgcatcacgcaaatgcaagccaccctggt 140829 Query: 302 ggaaaggtttgtttggaggtgcaacaaccgactatcaagaaagagaacgatgcgaagaac 361 |||||||||| || ||||| ||| |||| ||||||||||||||||| |||| ||||| | Sbjct: 140830 ggaaaggtttattgggaggagcaccaactgactatcaagaaagagagagatgtgaagagc 140889 Query: 362 gagagatggcttcttgtcttgaatcagcaaaggaggcatgcattaagttttcaaagcaaa 421 | |||||||| ||||||||||| |||||| || || || |||||||| | ||| ||| Sbjct: 140890 gtgagatggccgcttgtcttgaagcagcaagagaagcttgtgttaagtttgccaaggaaa 140949 Query: 422 aatgtgatgcaccattccgagatgcaaggattgcctctgaaggtctccttgaaaatac 479 |||| || ||| |||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 140950 aatgcattgaacccttccgagatgcaaggattgcttctgagggtcttcttgaaaatac 141007 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 163 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggctgccgaggcc 222 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 138966 cccgtcctcgccttccgcgacgccgcgagctggcgcgccgcgtgggaggccgccgaggcc 139025 Query: 223 agcctc 228 |||||| Sbjct: 139026 agcctc 139031 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 58 tcggaggactactccccggcggccaccgtcgtccccttcaacccgccgctccctctgctt 117 ||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || || Sbjct: 138867 tcggaggactactccccggcggccaccgtggtccgcttcgacccgccgctcccgctcctc 138926 Query: 118 cgcgcgccagtccc 131 || ||||| ||||| Sbjct: 138927 cgtgcgcccgtccc 138940
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 163 bits (82), Expect = 8e-37 Identities = 199/238 (83%) Strand = Plus / Plus Query: 242 aggctggtgcacgctctggctgttcaatcaccgcgacacggaaatgcaagcccccctggt 301 ||||||| ||||| ||||| |||||||| || || |||| ||||||||||| ||||||| Sbjct: 23124767 aggctggggcacggtctgggtgttcaattactgcatcacgcaaatgcaagccaccctggt 23124826 Query: 302 ggaaaggtttgtttggaggtgcaacaaccgactatcaagaaagagaacgatgcgaagaac 361 |||||||||| || ||||| ||| |||| ||||||||||||||||| |||| ||||| | Sbjct: 23124827 ggaaaggtttattgggaggagcaccaactgactatcaagaaagagagagatgtgaagagc 23124886 Query: 362 gagagatggcttcttgtcttgaatcagcaaaggaggcatgcattaagttttcaaagcaaa 421 | |||||||| ||||||||||| |||||| || || || |||||||| | ||| ||| Sbjct: 23124887 gtgagatggccgcttgtcttgaagcagcaagagaagcttgtgttaagtttgccaaggaaa 23124946 Query: 422 aatgtgatgcaccattccgagatgcaaggattgcctctgaaggtctccttgaaaatac 479 |||| || ||| |||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 23124947 aatgcattgaacccttccgagatgcaaggattgcttctgagggtcttcttgaaaatac 23125004 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 163 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggctgccgaggcc 222 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 23122963 cccgtcctcgccttccgcgacgccgcgagctggcgcgccgcgtgggaggccgccgaggcc 23123022 Query: 223 agcctc 228 |||||| Sbjct: 23123023 agcctc 23123028 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 58 tcggaggactactccccggcggccaccgtcgtccccttcaacccgccgctccctctgctt 117 ||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || || Sbjct: 23122864 tcggaggactactccccggcggccaccgtggtccgcttcgacccgccgctcccgctcctc 23122923 Query: 118 cgcgcgccagtccc 131 || ||||| ||||| Sbjct: 23122924 cgtgcgcccgtccc 23122937
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 163 bits (82), Expect = 8e-37 Identities = 199/238 (83%) Strand = Plus / Plus Query: 242 aggctggtgcacgctctggctgttcaatcaccgcgacacggaaatgcaagcccccctggt 301 ||||||| ||||| ||||| |||||||| || || |||| ||||||||||| ||||||| Sbjct: 23434677 aggctggggcacggtctgggtgttcaattactgcatcacgcaaatgcaagccaccctggt 23434736 Query: 302 ggaaaggtttgtttggaggtgcaacaaccgactatcaagaaagagaacgatgcgaagaac 361 |||||||||| || ||||| ||| |||| ||||||||||||||||| |||| ||||| | Sbjct: 23434737 ggaaaggtttattgggaggagcaccaactgactatcaagaaagagagagatgtgaagagc 23434796 Query: 362 gagagatggcttcttgtcttgaatcagcaaaggaggcatgcattaagttttcaaagcaaa 421 | |||||||| ||||||||||| |||||| || || || |||||||| | ||| ||| Sbjct: 23434797 gtgagatggccgcttgtcttgaagcagcaagagaagcttgtgttaagtttgccaaggaaa 23434856 Query: 422 aatgtgatgcaccattccgagatgcaaggattgcctctgaaggtctccttgaaaatac 479 |||| || ||| |||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 23434857 aatgcattgaacccttccgagatgcaaggattgcttctgagggtcttcttgaaaatac 23434914 Score = 107 bits (54), Expect = 4e-20 Identities = 63/66 (95%) Strand = Plus / Plus Query: 163 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggctgccgaggcc 222 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 23432873 cccgtcctcgccttccgcgacgccgcgagctggcgcgccgcgtgggaggccgccgaggcc 23432932 Query: 223 agcctc 228 |||||| Sbjct: 23432933 agcctc 23432938 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 58 tcggaggactactccccggcggccaccgtcgtccccttcaacccgccgctccctctgctt 117 ||||||||||||||||||||||||||||| |||| |||| ||||||||||||| || || Sbjct: 23432774 tcggaggactactccccggcggccaccgtggtccgcttcgacccgccgctcccgctcctc 23432833 Query: 118 cgcgcgccagtccc 131 || ||||| ||||| Sbjct: 23432834 cgtgcgcccgtccc 23432847
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 147 bits (74), Expect = 5e-32 Identities = 80/82 (97%) Strand = Plus / Minus Query: 163 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggctgccgaggcc 222 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 91184 cccgtcctcgccttccgcgacgccgcgagctggcgagccgcctgggaggccgccgaggcc 91125 Query: 223 agcctcttctcccagtgcgagg 244 |||||| ||||||||||||||| Sbjct: 91124 agcctcgtctcccagtgcgagg 91103 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 59 cggaggactactccccggcggccaccgtcgtccccttcaacccgccgctccctctgcttc 118 |||||||||| ||| ||| ||||||||| || | |||| |||||||||||||||| || | Sbjct: 91282 cggaggactattccgcggaggccaccgtggtgcgcttcgacccgccgctccctctcctcc 91223 Query: 119 gcgcgccagtccc 131 | ||||||||||| Sbjct: 91222 gggcgccagtccc 91210
>gb|AC158208.2| Physcomitrella patens clone JGIASYB-1A9, complete sequence Length = 38977 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tcctcttcctccgcctccacc 153 ||||||||||||||||||||| Sbjct: 20329 tcctcttcctccgcctccacc 20309
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cctcgccttccgcgacgccgc 188 ||||||||||||||||||||| Sbjct: 12708 cctcgccttccgcgacgccgc 12728
>gb|AY656715.1| Homo sapiens MCTP1L mRNA, complete cds Length = 3000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 469 ccttcctcttcctccgcctc 488
>gb|AC113474.18| Mus musculus chromosome 5, clone RP23-297J17, complete sequence Length = 219936 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 gtcccttcctcttcctccgcctcc 150 |||||||||||||||||| ||||| Sbjct: 164410 gtcccttcctcttcctcctcctcc 164433
>gb|AY391425.1| Danio rerio hypothetical protein FLJ14075-like protein mRNA, complete cds Length = 2973 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 2255 ccttcctcttcctccgcctc 2236
>ref|XM_517652.1| PREDICTED: Pan troglodytes similar to MCTP1L (LOC461748), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 469 ccttcctcttcctccgcctc 488
>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence Length = 153863 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 134805 cttcctcttcctccgcctcc 134786
>ref|XM_616638.2| PREDICTED: Bos taurus similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1) (LOC536506), mRNA Length = 3963 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 1456 cttcctcttcctccgcctcc 1437
>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence Length = 176889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 1970 cttcctcttcctccgcctcc 1951
>gb|AC148310.2| Pan troglodytes BAC clone RP43-31J11 from 7, complete sequence Length = 203635 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 170471 cttcctcttcctccgcctcc 170452
>gb|AY560864.1| Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g43410) mRNA, complete cds Length = 396 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 269 cttcctcttcctccgcctcc 288
>gb|AC146391.4| Pan troglodytes BAC clone RP43-56L16 from 7, complete sequence Length = 155929 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctccacc 153 ||||||||||||||| |||||||| Sbjct: 136374 ccttcctcttcctcctcctccacc 136351
>gb|BC047174.1| Danio rerio nucleolar protein 10, mRNA (cDNA clone MGC:55626 IMAGE:2644844), complete cds Length = 3021 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 2304 ccttcctcttcctccgcctc 2285
>gb|AC146607.2| Mus musculus BAC clone RP23-209N19 from chromosome 3, complete sequence Length = 173758 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 11477 cttcctcttcctccgcctcc 11458
>ref|XM_540785.2| PREDICTED: Canis familiaris similar to Insulin-like growth factor II precursor (IGF-II) (Somatomedin A), transcript variant 1 (LOC483664), mRNA Length = 646 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 133 tcctcttcctccgcctccaccgacccca 160 |||||||||||| |||||||| |||||| Sbjct: 41 tcctcttcctcctcctccaccaacccca 68
>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence Length = 293695 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gtggaaaggtttgtttggag 319 |||||||||||||||||||| Sbjct: 160228 gtggaaaggtttgtttggag 160247
>ref|XM_380979.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00803.1) partial mRNA Length = 4728 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 3460 cttcctcttcctccgcctcc 3441
>gb|AC131103.4| Mus musculus BAC clone RP23-213K14 from chromosome 19, complete sequence Length = 210370 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 170001 cttcctcttcctccgcctcc 169982
>gb|AC120837.6| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-439E2, Complete Sequence, complete sequence Length = 211996 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tcccttcctcttcctccgcctcca 151 ||||||||||||||||| |||||| Sbjct: 115851 tcccttcctcttcctcctcctcca 115874
>gb|AC114549.9| Mus musculus chromosome 19, clone RP24-216P17, complete sequence Length = 200425 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 92210 cttcctcttcctccgcctcc 92191
>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence Length = 215685 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gtggaaaggtttgtttggag 319 |||||||||||||||||||| Sbjct: 51731 gtggaaaggtttgtttggag 51750
>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence Length = 116179 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 catgcattaagttttcaaag 417 |||||||||||||||||||| Sbjct: 115947 catgcattaagttttcaaag 115966
>emb|AL449265.13| Human DNA sequence from clone RP11-485I9 on chromosome X, complete sequence Length = 125282 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tcagcaaaggaggcatgcat 404 |||||||||||||||||||| Sbjct: 120149 tcagcaaaggaggcatgcat 120168
>ref|XM_502096.1| Yarrowia lipolytica CLIB122, YALI0C21538g predicted mRNA Length = 7398 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tcttcctccgcctccaccgacccc 159 ||||||||||||||| |||||||| Sbjct: 4480 tcttcctccgcctcctccgacccc 4503
>emb|AL355580.13| Human DNA sequence from clone RP11-76K10 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 179497 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 tcttgaatcagcaaaggagg 397 |||||||||||||||||||| Sbjct: 99750 tcttgaatcagcaaaggagg 99769
>gb|AC091535.2| Takifugu rubripes clone 241F4, complete sequence Length = 71409 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 7562 cttcctcttcctccgcctcc 7581
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tcgccttccgcgacgccgcg 189 |||||||||||||||||||| Sbjct: 207079 tcgccttccgcgacgccgcg 207060
>emb|AL646089.6| Mouse DNA sequence from clone RP23-169P3 on chromosome 11, complete sequence Length = 30135 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tcccttcctcttcctccgcctcca 151 ||||||||||||||||| |||||| Sbjct: 8022 tcccttcctcttcctcctcctcca 7999
>gb|AC105746.10| Oryza sativa chromosome 10 BAC OSJNBb0086I08 genomic sequence, complete sequence Length = 126842 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 agttttcaaagcaaaaatgt 426 |||||||||||||||||||| Sbjct: 91267 agttttcaaagcaaaaatgt 91286
>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence Length = 127568 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 catgcattaagttttcaaag 417 |||||||||||||||||||| Sbjct: 68343 catgcattaagttttcaaag 68324
>gb|AC015795.20| Homo sapiens chromosome 17, clone RP11-613C6, complete sequence Length = 170862 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 134372 ccttcctcttcctccgcctc 134391
>gb|AC008573.5| Homo sapiens chromosome 5 clone CTC-551I11, complete sequence Length = 169544 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 37347 ccttcctcttcctccgcctc 37328
>gb|AC008471.7| Homo sapiens chromosome 5 clone CTC-366N20, complete sequence Length = 152116 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 134469 ccttcctcttcctccgcctc 134450
>gb|AC027801.10| Homo sapiens chromosome 17, clone RP11-304F15, complete sequence Length = 164914 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 10239 ccttcctcttcctccgcctc 10258
>dbj|AK046047.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230337K13 product:hypothetical protein, full insert sequence Length = 2502 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gtggaaaggtttgtttggag 319 |||||||||||||||||||| Sbjct: 2200 gtggaaaggtttgtttggag 2219
>gb|AC026446.4| Homo sapiens chromosome 5 clone CTD-2313E2, complete sequence Length = 135499 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 71490 ccttcctcttcctccgcctc 71471
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgcaaggattgcctctgaag 463 |||||||||||||||||||| Sbjct: 25923764 tgcaaggattgcctctgaag 25923745 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 14851699 ccgtcatccccttcatcccgccgctccc 14851672
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 agttttcaaagcaaaaatgt 426 |||||||||||||||||||| Sbjct: 5576255 agttttcaaagcaaaaatgt 5576236
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 10870183 ccgtcatccccttcatcccgccgctccc 10870156
>gb|AC011310.3|AC011310 Homo sapiens BAC clone CTD-2590C17 from 7p11.2-p21, complete sequence Length = 142834 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctccacc 153 ||||||||||||||| |||||||| Sbjct: 123514 ccttcctcttcctcctcctccacc 123491
>gb|AC018641.3|AC018641 Human Chromosome 7 clone RP11-182G3, complete sequence Length = 183060 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctccacc 153 ||||||||||||||| |||||||| Sbjct: 132659 ccttcctcttcctcctcctccacc 132682
>gb|AC018637.3|AC018637 Human Chromosome 7 clone RP11-175P8, complete sequence Length = 184571 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctccacc 153 ||||||||||||||| |||||||| Sbjct: 141610 ccttcctcttcctcctcctccacc 141587
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agagaacgatgcgaagaacg 362 |||||||||||||||||||| Sbjct: 3979842 agagaacgatgcgaagaacg 3979823
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gcttcttgtcttgaatcagc 389 |||||||||||||||||||| Sbjct: 4376090 gcttcttgtcttgaatcagc 4376071
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 80942 ccgtcatccccttcatcccgccgctccc 80915
>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21 Length = 134543 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 46558 ccgtcatccccttcatcccgccgctccc 46531
>dbj|AK101614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052E24, full insert sequence Length = 1793 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 tgcaaggattgcctctgaag 463 |||||||||||||||||||| Sbjct: 1103 tgcaaggattgcctctgaag 1122
>dbj|AK060783.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C11, full insert sequence Length = 1667 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 tgcaaggattgcctctgaag 463 |||||||||||||||||||| Sbjct: 977 tgcaaggattgcctctgaag 996
>gb|AC164421.3| Mus musculus chromosome 5, clone RP24-257M14, complete sequence Length = 154470 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 gtcccttcctcttcctccgcctcc 150 |||||||||||||||||| ||||| Sbjct: 138121 gtcccttcctcttcctcctcctcc 138098
>dbj|AP002387.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-660L16, complete sequence Length = 170523 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cttcctcttcctccgcctcc 150 |||||||||||||||||||| Sbjct: 76878 cttcctcttcctccgcctcc 76897
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 325 acaaccgactatcaagaaagagaa 348 |||||||| ||||||||||||||| Sbjct: 2367543 acaaccgagtatcaagaaagagaa 2367566
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 agttttcaaagcaaaaatgt 426 |||||||||||||||||||| Sbjct: 5577042 agttttcaaagcaaaaatgt 5577023
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgcaaggattgcctctgaag 463 |||||||||||||||||||| Sbjct: 25851940 tgcaaggattgcctctgaag 25851921 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 14805982 ccgtcatccccttcatcccgccgctccc 14805955
>emb|AL772417.3|CNS08C9V Oryza sativa chromosome 12, . BAC OSJNBa0041M09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146519 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 ccgtcgtccccttcaacccgccgctccc 110 ||||| ||||||||| |||||||||||| Sbjct: 68187 ccgtcatccccttcatcccgccgctccc 68214
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 61296 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 tgcaaggattgcctctgaag 463 |||||||||||||||||||| Sbjct: 51525 tgcaaggattgcctctgaag 51544
>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence Length = 220038 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 cttcttgtcttgaatcagcaaaggaggcatgc 402 |||||||||||| |||| |||||||| ||||| Sbjct: 38567 cttcttgtcttggatcaacaaaggagtcatgc 38536
>emb|Z66500.1|CET05C12 Caenorhabditis elegans Cosmid T05C12, complete sequence Length = 33780 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 cgagagatggcttcttgtct 380 |||||||||||||||||||| Sbjct: 30211 cgagagatggcttcttgtct 30230
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 tcttcctccgcctccaccgacccc 159 ||||||||||||||| |||||||| Sbjct: 2881287 tcttcctccgcctcctccgacccc 2881264
>gb|AC154507.2| Mus musculus BAC clone RP24-95E21 from chromosome 17, complete sequence Length = 189330 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tcccttcctcttcctccgcctcca 151 ||||||||||||||||| |||||| Sbjct: 111799 tcccttcctcttcctcctcctcca 111822
>ref|NM_200237.1| Danio rerio nucleolar protein 10 (nol10), mRNA Length = 3021 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 2304 ccttcctcttcctccgcctc 2285
>ref|NM_024717.3| Homo sapiens multiple C2 domains, transmembrane 1 (MCTP1), transcript variant L, mRNA Length = 3000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ccttcctcttcctccgcctc 149 |||||||||||||||||||| Sbjct: 469 ccttcctcttcctccgcctc 488
>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 4B7 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 132348 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tcccttcctcttcctccgcctcca 151 ||||||||||||||||| |||||| Sbjct: 95375 tcccttcctcttcctcctcctcca 95398
>emb|AL713886.1|CNS07YOY Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 247A17 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 126128 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tcccttcctcttcctccgcctcca 151 ||||||||||||||||| |||||| Sbjct: 113648 tcccttcctcttcctcctcctcca 113625 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,664,279 Number of Sequences: 3902068 Number of extensions: 5664279 Number of successful extensions: 142932 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142163 Number of HSP's gapped (non-prelim): 765 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)