ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart12c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-c... 30 3.6
2UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-c... 30 3.6

>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95-like ring
           finger protein) (Nuclear zinc finger protein Np97)
           (NIRF)
          Length = 803

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 557 CDVAVEHVLAAERRLEVRGRLVALEEGVEGREPEALAVEEGQRLDAV--VVEADPLVGVA 384
           CD  ++  + AE R    G+ V +    +GR+    A EEG R D +  VV+  P +  +
Sbjct: 542 CDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSS 601

Query: 383 H 381
           H
Sbjct: 602 H 602



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>UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95/ICBP90-like
           RING finger protein) (Np95-like RING finger protein)
           (Nuclear zinc finger
          Length = 802

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 557 CDVAVEHVLAAERRLEVRGRLVALEEGVEGREPEALAVEEGQRLDAV--VVEADPLVGVA 384
           CD  ++  + AE R    G+ V +    +GR+    A EEG R D +  VV+  P +  +
Sbjct: 541 CDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSS 600

Query: 383 H 381
           H
Sbjct: 601 H 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.289    0.105    0.288 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,373,140
Number of Sequences: 219361
Number of extensions: 569233
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
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