>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor|
          Length = 254

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
 Frame = +1

Query: 292 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 471
           N+T +L  AG +  F+  + ST        QAN ++ G T+F P D+AF + K   L++L
Sbjct: 46  NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105

Query: 472 SQQDQVTLVQAHIVPTFYSMESFE--TASNPVRTQASG 579
           ++     LV  H +P +YS+  F+  + S PV T A G
Sbjct: 106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGG 143

>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 34/103 (33%), Positives = 53/103 (51%)
 Frame = +1

Query: 280 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 459
           A+  N+T +LEKAG  T F  L+ S+     L    +  + G TVFAP+D AF +     
Sbjct: 185 ASLSNITGLLEKAGCKT-FANLLVSSGV---LKTYESAVEKGLTVFAPSDEAFKAEGVPD 240

Query: 460 LNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDG 588
           L  L+Q + V+L++ H +  +    S +T  N + T A+   G
Sbjct: 241 LTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAG 283

>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 32/103 (31%), Positives = 53/103 (51%)
 Frame = +1

Query: 280 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 459
           A   N+T +LEKAG  T F  L+ S+     +    +  + G TVFAP+D AF +     
Sbjct: 186 AGVSNITGLLEKAGCKT-FANLLVSSGV---IKTFESTVEKGLTVFAPSDEAFKARGVPD 241

Query: 460 LNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDG 588
           L +L+Q + V+L++ H +  +    S +T  + + T A+   G
Sbjct: 242 LTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAG 284

>Y1483_SYNY3 (P74615) Hypothetical protein sll1483 precursor|
          Length = 180

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
 Frame = +1

Query: 280 AAAPNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGT 459
           AA  +   ++E A     F  L+A+ +    + A + E    FTVFAPT++AF +L  GT
Sbjct: 40  AATDSAMTIVEVAAGNETFSTLVAAVKAADLVEALSAEGP--FTVFAPTNDAFAALPAGT 97

Query: 460 LNSL----SQQDQVTLVQAHIVP---TFYSMESFETAS 552
           + SL    ++   V ++  H+VP   T   ++S E AS
Sbjct: 98  VESLLLPENKDKLVKILTYHVVPGKITAAQVQSGEVAS 135

>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like|
           laminin-type EGF-like and link domain-containing
           scavenger receptor 1) (FAS1 EGF-like and X-link
           domain-containing adhesion molecule 2) (Hyaluronan
           receptor for endocytosis) [
          Length = 2551

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
 Frame = +1

Query: 322 QYTKFIRLMASTQQDTQLNAQANESDTG--FTVFAPTDNAFNSLKPGTLNSL----SQQD 483
           +Y+KF  L+    ++T L    +E   G  +T+F P + A N++K GTL+ L      + 
Sbjct: 527 RYSKFRSLL----EETNLGHALDEDGVGGPYTIFVPNNEALNNMKDGTLDYLLSPEGSRK 582

Query: 484 QVTLVQAHIVPTFYSMESFETASNP-VRTQAS 576
            + LV+ HIVP F  +E     S P +R+ A+
Sbjct: 583 LLELVRYHIVP-FTQLEVATLISTPHIRSMAN 613

>YH35_SYNP2 (O33752) Hypothetical protein sll1735 homolog|
          Length = 133

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/48 (45%), Positives = 28/48 (58%)
 Frame = +1

Query: 334 FIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 477
           F  L+A+ Q    +   A E D  FTVFAP D+AF  L PGT+ +L Q
Sbjct: 14  FSTLVAAVQAAGLVETLAGEGD--FTVFAPNDDAFAKLPPGTIQTLVQ 59

>Y1735_SYNY3 (P73392) Hypothetical protein sll1735|
          Length = 133

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +1

Query: 391 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 477
           +S   FTVFAPTD AF  L PGT+ +L Q
Sbjct: 31  QSPGPFTVFAPTDTAFAKLPPGTITTLVQ 59

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +1

Query: 403 GFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGT 582
           G TVF P D+A     P   N L+   +   +    VPT+YSM   ++ + P+ T A  T
Sbjct: 220 GMTVFCPGDDAMKGFLPKYKN-LTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLA--T 276

Query: 583 DG 588
           DG
Sbjct: 277 DG 278

>VPS33_YEAST (P20795) Vacuolar protein sorting 33 (SLP1 protein)|
          Length = 691

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +1

Query: 457 TLNSLSQQDQVTLVQAHIVPTFYSMESFE--TASNPVR 564
           TLN +SQ D+V +VQ  ++P   S+ +F+  T S PVR
Sbjct: 21  TLNEISQNDEVLVVQPSVLPVLNSLLTFQDLTQSTPVR 58

>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)|
           [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan
           receptor for endocytosis)] (Fragment)
          Length = 1431

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 292 NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANES-DTGFTVFAPTDNAFNSLKPGTLNS 468
           N+T V    G YTKF +L+    QD+ L +   +S  T  TVF PTD A  +L P   + 
Sbjct: 607 NLTTVAANHG-YTKFSKLI----QDSGLLSVITDSIHTPVTVFWPTDKALEALPPEQQDF 661

Query: 469 LSQQDQVTLVQAHI 510
           L  QD    +++++
Sbjct: 662 LFNQDNKDKLKSYL 675

>CROC_DROME (P32027) Fork head domain protein crocodile (FKH protein FD1)|
          Length = 508

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 23/83 (27%), Positives = 33/83 (39%)
 Frame = +3

Query: 324 VHQVHPADGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAGPGDARAG 503
           +H VH A    AA H A++  + V H  H + P  Q      +GH    ++   G A  G
Sbjct: 295 MHHVHHA----AAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG 350

Query: 504 AHRPHLLLHGVLRDRQQPCPHPG 572
            + P            +P PH G
Sbjct: 351 WYTPE-------TPPSEPVPHNG 366

>BGH3_RABIT (Q95215) Transforming growth factor-beta-induced protein ig-h3|
           precursor (Beta ig-h3) (Kerato-epithelin)
           (RGD-containing collagen-associated protein) (RGD-CAP)
          Length = 683

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 406 FTVFAPTDNAFNSLKPGTLNSL 471
           +TVFAPT+ AF +L PG LN L
Sbjct: 537 YTVFAPTNEAFQALPPGELNKL 558

>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau|
          Length = 775

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
 Frame = +3

Query: 354 DAAGHAAER--AGQRVGHGLHGVRPHRQRLQQPQAGHPQLAL-------------AAGPG 488
           +AAGH  +   +G+ V  G  G    R    Q  +G P   L               GP 
Sbjct: 116 EAAGHVTQEPESGKVVREGFLGEPGPRSXSHQLASGMPGAPLLPEGPREATRQPSGTGPE 175

Query: 489 DARAGAHRPHLLLHGVLRDRQQPCP 563
           D   G H P LL H +L D  Q  P
Sbjct: 176 DTEGGRHAPELLKHQLLGDLHQEGP 200

>MP70_MYCTU (P0A668) Immunogenic protein MPT70 precursor|
          Length = 193

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 513
           QLN Q N  DT     +TVFAPT+ AF+ L   T++ L     +  +++  H+V
Sbjct: 80  QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133

>MP70_MYCBO (P0A669) Immunogenic protein MPB70 precursor|
          Length = 193

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 513
           QLN Q N  DT     +TVFAPT+ AF+ L   T++ L     +  +++  H+V
Sbjct: 80  QLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 133

>PAM1_YEAST (P37304) Protein PAM1|
          Length = 830

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = +1

Query: 418 APTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYSMESFETASNPVRTQASGTDGPCT 597
           AP  N  NS  P  L SLSQ     + Q +I        +F T+ NP      GT    T
Sbjct: 733 APCVNQLNSDSPPQLQSLSQNGTSKVPQINITQPSPIQTNFATSDNPAAVIKLGTPSEDT 792

Query: 598 V 600
           V
Sbjct: 793 V 793

>POSTN_HUMAN (Q15063) Periostin precursor (PN) (Osteoblast-specific factor 2)|
           (OSF-2)
          Length = 836

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +1

Query: 397 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES------FETA 549
           D  FT+FAPT+ AF  L  G L  +   D+V    L++ HI+ T    ES      FET 
Sbjct: 266 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSESIMGGAVFETL 324

Query: 550 SNPVRTQASGTDG 588
                T   G DG
Sbjct: 325 EG--NTIEIGCDG 335

>MP70_MYCKA (Q49614) Immunogenic protein MPT70 analog precursor (Fragment)|
          Length = 121

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 370 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSL 471
           +LN Q N  DT     +TVFAPTD AF+ L   T+  L
Sbjct: 78  RLNPQVNLVDTLNNGQYTVFAPTDPAFDKLPASTIVQL 115

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = +1

Query: 292  NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 471
            NVTA  E  G Y  F RL+        L    + S   FT+  PTD+A  +L P   N L
Sbjct: 1728 NVTAAAESFG-YKIFSRLLTVAGLLPMLQ---DASHRPFTMLWPTDSALQALPPDRKNWL 1783

Query: 472  SQQDQ----VTLVQAHIVPTFYSMESFETASNPVRTQASGT 582
              +D       +++ H++    ++ S       +RT    T
Sbjct: 1784 FHEDHRDKLAAILRGHMIRNIEALASDLPNLGQLRTMHGNT 1824

>BGH3_MOUSE (P82198) Transforming growth factor-beta-induced protein ig-h3|
           precursor (Beta ig-h3)
          Length = 683

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 289 PNVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNS 468
           P +  V++      +F  L+A+ Q    +     E    +TVFAPT+ AF ++ P  LN 
Sbjct: 500 PPMGTVMDVLKGDNRFSMLVAAIQSAGLMEILNREGV--YTVFAPTNEAFQAMPPEELNK 557

Query: 469 L--SQQDQVTLVQAHI 510
           L  + ++   +++ HI
Sbjct: 558 LLANAKELTNILKYHI 573



 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 391 ESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQA 504
           E    FT+FAP++ A++SL    L+SL     + L+ A
Sbjct: 133 EGPGSFTIFAPSNEAWSSLPAEVLDSLVSNVNIELLNA 170

>VID21_EMENI (Q5B4Q8) Chromatin modification-related protein vid21|
          Length = 1447

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 435  LQQPQAGHPQLALAAGPGDARAGAHRPHLL-LHGVLRDRQQPCPHP 569
            +QQ  A  P +A+ A P +AR       L     +L+ RQQP  HP
Sbjct: 1149 MQQNNAPRPNMAMQASPDNARVIREANRLQEQQRILQSRQQPSQHP 1194

>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC|
           3.1.3.48) (Embryonic stem cell protein-tyrosine
           phosphatase) (ES cell phosphatase) (Osteotesticular
           protein-tyrosine phosphatase) (OST-PTP)
          Length = 1711

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +1

Query: 349 ASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQQDQVTLVQAHIVPTFYS 528
           + + +  QL A  NES  GF        +   LK   L    Q   +TL  A   PT   
Sbjct: 76  SGSPEGQQLQAHTNES--GFEFHGLVPGSRYQLKLTVLRPCWQNVTITLT-ARTAPTVVR 132

Query: 529 MESFETASNPVRTQASGTDGP 591
                +A +P R +AS +D P
Sbjct: 133 GLQLHSAGSPARLEASWSDAP 153

>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +1

Query: 292  NVTAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSL 471
            N+T V    G YTKF +L+   Q    L    +   T  T+F PTD A  +L     + L
Sbjct: 1750 NLTTVAANHG-YTKFSKLI---QDSGLLKVITDPMHTPVTLFWPTDKALQALPQEQQDFL 1805

Query: 472  SQQDQVTLVQAHI 510
              +D    ++A++
Sbjct: 1806 FNEDNKDKLKAYL 1818

>PGCA_MOUSE (Q61282) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2132

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
 Frame = +1

Query: 298  TAVLEKAGQYTKFIRLMASTQQDTQLNAQANESDTGFTVFAPTDNAFNSLKPGTLNSLSQ 477
            + +L  +GQ +    +   T   + L+ Q +    GF VF+ T      L  GT++   +
Sbjct: 1408 SGILFGSGQSSGITSVSGETSGISDLSGQPS----GFPVFSGTATRTPDLASGTISGSGE 1463

Query: 478  QDQVTLVQ---AHIVPTFYSME----SFETASNPV-RTQASGTDGPCTV 600
               +T V      + PT +  E    S E +  P   T+ SGT G   V
Sbjct: 1464 SSGITFVDTSFVEVTPTTFREEEGLGSVELSGFPSGETELSGTSGTVDV 1512

>POSTN_MOUSE (Q62009) Periostin precursor (PN) (Osteoblast-specific factor 2)|
           (OSF-2)
          Length = 838

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 397 DTGFTVFAPTDNAFNSLKPGTLNSLSQQDQV---TLVQAHIVPTFYSMES 537
           D  FT+FAPT+ AF  L  G L  +   D+V    L++ HI+ T    E+
Sbjct: 268 DGHFTLFAPTNEAFEKLPRGVLERI-MGDKVASEALMKYHILNTLQCSEA 316

>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)|
           (Scaffold attachment factor A) (SAF-A) (p120) (pp120)
          Length = 824

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +3

Query: 345 DGVDAAGHAAERAGQRVGHGLHGVRPHRQRLQQPQAGHPQLALAAG 482
           +G D  G   E AG   GHG    +P   + QQPQ        AAG
Sbjct: 140 EGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185

>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)|
          Length = 220

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 513
           +LN   N  DT     +TVFAPT+ AF+ L   T++ L    ++  +++  H++
Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159

>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)|
          Length = 220

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = +1

Query: 370 QLNAQANESDT----GFTVFAPTDNAFNSLKPGTLNSLSQQDQV--TLVQAHIV 513
           +LN   N  DT     +TVFAPT+ AF+ L   T++ L    ++  +++  H++
Sbjct: 106 KLNPDVNLVDTLNGGEYTVFAPTNAAFDKLPAATIDQLKTDAKLLSSILTYHVI 159


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,635,929
Number of Sequences: 219361
Number of extensions: 882507
Number of successful extensions: 3285
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)