ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474411.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 675 Score = 301 bits (152), Expect = 1e-78 Identities = 260/296 (87%) Strand = Plus / Plus Query: 194 accgcggcagccggtgcatggcgttcctcgacttcctgctgaggatcgcggcgttcgggc 253 ||||||||||||||||| | ||||||||||||||| | ||| ||||||| || ||||| | Sbjct: 170 accgcggcagccggtgcctcgcgttcctcgacttcatcctgcggatcgccgccttcggcc 229 Query: 254 cggcgctcgcggcggccatcgccaccggcacgtccgacgagacgctctccgtcttcaccg 313 | || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 230 ccgcactggcggcggccatctccaccggcacgtccgacgagacgctctccgtcttcaccg 289 Query: 314 agttcttccagttccgcgcccgtttcgacgacttcccagccttcttgttcctcatggtgg 373 |||||| ||||||||||||| | ||||| |||||||| |||||| ||||| || |||||| Sbjct: 290 agttctaccagttccgcgccagattcgatgacttcccggccttcctgttcttcttggtgg 349 Query: 374 cgagcgcgatcgccgcggggtacctgctgctgtccctccccttctccgccgtcgtcgtgc 433 ||| |||||||| || ||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 350 cgaacgcgatcgtggcagggtacctggtgctgtccctccctttctccgccgtcctcgtga 409 Query: 434 tgcggcctcaaaccaccgtcctgaggcttctcttgctcgtctgcgacacgatcatg 489 | ||||||| |||| || ||| ||||||||| ||||||||||||||| ||||||| Sbjct: 410 taaggcctcagaccatcggcctcaggcttctcctgctcgtctgcgacatgatcatg 465
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 3e-45 Identities = 147/164 (89%) Strand = Plus / Plus Query: 194 accgcggcagccggtgcatggcgttcctcgacttcctgctgaggatcgcggcgttcgggc 253 ||||||||||||||||| | ||||||||||||||| | ||| ||||||| || ||||| | Sbjct: 34985864 accgcggcagccggtgcctcgcgttcctcgacttcatcctgcggatcgccgccttcggcc 34985923 Query: 254 cggcgctcgcggcggccatcgccaccggcacgtccgacgagacgctctccgtcttcaccg 313 | || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 34985924 ccgcactggcggcggccatctccaccggcacgtccgacgagacgctctccgtcttcaccg 34985983 Query: 314 agttcttccagttccgcgcccgtttcgacgacttcccagccttc 357 |||||| ||||||||||||| | ||||| |||||||| |||||| Sbjct: 34985984 agttctaccagttccgcgccagattcgatgacttcccggccttc 34986027 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 368 tggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctccgccgtcg 427 ||||||||| |||||||| || ||||||||| ||||||||||||| |||||||||||| Sbjct: 34986143 tggtggcgaacgcgatcgtggcagggtacctggtgctgtccctccctttctccgccgtcc 34986202 Query: 428 tcgtgctgcggcctcaaaccaccgtcctgaggcttctcttgctcgtctgcgaca 481 ||||| | ||||||| |||| || ||| ||||||||| ||||||||||||||| Sbjct: 34986203 tcgtgataaggcctcagaccatcggcctcaggcttctcctgctcgtctgcgaca 34986256 Score = 40.1 bits (20), Expect = 7.5 Identities = 50/60 (83%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||||||| ||||| || ||||||||||| || ||||||| ||||| |||||||| Sbjct: 22957329 gccatcgccatgggcaccaccaacgagacgctccccttcttcacgcagttcatccagttc 22957388
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete sequence Length = 94152 Score = 190 bits (96), Expect = 3e-45 Identities = 147/164 (89%) Strand = Plus / Plus Query: 194 accgcggcagccggtgcatggcgttcctcgacttcctgctgaggatcgcggcgttcgggc 253 ||||||||||||||||| | ||||||||||||||| | ||| ||||||| || ||||| | Sbjct: 16020 accgcggcagccggtgcctcgcgttcctcgacttcatcctgcggatcgccgccttcggcc 16079 Query: 254 cggcgctcgcggcggccatcgccaccggcacgtccgacgagacgctctccgtcttcaccg 313 | || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 16080 ccgcactggcggcggccatctccaccggcacgtccgacgagacgctctccgtcttcaccg 16139 Query: 314 agttcttccagttccgcgcccgtttcgacgacttcccagccttc 357 |||||| ||||||||||||| | ||||| |||||||| |||||| Sbjct: 16140 agttctaccagttccgcgccagattcgatgacttcccggccttc 16183 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 368 tggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctccgccgtcg 427 ||||||||| |||||||| || ||||||||| ||||||||||||| |||||||||||| Sbjct: 16299 tggtggcgaacgcgatcgtggcagggtacctggtgctgtccctccctttctccgccgtcc 16358 Query: 428 tcgtgctgcggcctcaaaccaccgtcctgaggcttctcttgctcgtctgcgaca 481 ||||| | ||||||| |||| || ||| ||||||||| ||||||||||||||| Sbjct: 16359 tcgtgataaggcctcagaccatcggcctcaggcttctcctgctcgtctgcgaca 16412
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 190 bits (96), Expect = 3e-45 Identities = 147/164 (89%) Strand = Plus / Plus Query: 194 accgcggcagccggtgcatggcgttcctcgacttcctgctgaggatcgcggcgttcgggc 253 ||||||||||||||||| | ||||||||||||||| | ||| ||||||| || ||||| | Sbjct: 44914 accgcggcagccggtgcctcgcgttcctcgacttcatcctgcggatcgccgccttcggcc 44973 Query: 254 cggcgctcgcggcggccatcgccaccggcacgtccgacgagacgctctccgtcttcaccg 313 | || || |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 44974 ccgcactggcggcggccatctccaccggcacgtccgacgagacgctctccgtcttcaccg 45033 Query: 314 agttcttccagttccgcgcccgtttcgacgacttcccagccttc 357 |||||| ||||||||||||| | ||||| |||||||| |||||| Sbjct: 45034 agttctaccagttccgcgccagattcgatgacttcccggccttc 45077 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 368 tggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctccgccgtcg 427 ||||||||| |||||||| || ||||||||| ||||||||||||| |||||||||||| Sbjct: 45193 tggtggcgaacgcgatcgtggcagggtacctggtgctgtccctccctttctccgccgtcc 45252 Query: 428 tcgtgctgcggcctcaaaccaccgtcctgaggcttctcttgctcgtctgcgaca 481 ||||| | ||||||| |||| || ||| ||||||||| ||||||||||||||| Sbjct: 45253 tcgtgataaggcctcagaccatcggcctcaggcttctcctgctcgtctgcgaca 45306
>ref|XM_479651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 714 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||| ||| |||||| |||||||||| |||||||||||||||| | | |||||||||| Sbjct: 265 gccatctccatcggcacctccgacgagaggctctccgtcttcaccaactacttccagttc 324 Query: 328 cgcgcccgtttcgacgacttcccagccttcttgttcctcatggtggcgagcgcgatcgcc 387 |||||| | |||||||||||||| || ||| |||| |||| ||||||| |||||||| Sbjct: 325 cgcgccagattcgacgacttcccggctttcgagttcttcattgtggcgaatgcgatcgcg 384 Query: 388 gcggggtacctgctgctgtccctccccttctccgccg 424 ||||||||| || | ||||| || ||||||||||||| Sbjct: 385 gcggggtacatggtactgtcgctgcccttctccgccg 421
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||| ||| |||||| |||||||||| |||||||||||||||| | | |||||||||| Sbjct: 102364 gccatctccatcggcacctccgacgagaggctctccgtcttcaccaactacttccagttc 102423 Query: 328 cgcgcccgtttcgacgacttccc 350 |||||| | |||||||||||||| Sbjct: 102424 cgcgccagattcgacgacttccc 102446 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 360 gttcctcatggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctc 419 |||| |||| ||||||| |||||||| ||||||||| || | ||||| || |||||||| Sbjct: 102543 gttcttcattgtggcgaatgcgatcgcggcggggtacatggtactgtcgctgcccttctc 102602 Query: 420 cgccg 424 ||||| Sbjct: 102603 cgccg 102607
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||| ||| |||||| |||||||||| |||||||||||||||| | | |||||||||| Sbjct: 17699 gccatctccatcggcacctccgacgagaggctctccgtcttcaccaactacttccagttc 17758 Query: 328 cgcgcccgtttcgacgacttccc 350 |||||| | |||||||||||||| Sbjct: 17759 cgcgccagattcgacgacttccc 17781 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 360 gttcctcatggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctc 419 |||| |||| ||||||| |||||||| ||||||||| || | ||||| || |||||||| Sbjct: 17878 gttcttcattgtggcgaatgcgatcgcggcggggtacatggtactgtcgctgcccttctc 17937 Query: 420 cgccg 424 ||||| Sbjct: 17938 cgccg 17942
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||| ||| |||||| |||||||||| |||||||||||||||| | | |||||||||| Sbjct: 102364 gccatctccatcggcacctccgacgagaggctctccgtcttcaccaactacttccagttc 102423 Query: 328 cgcgcccgtttcgacgacttccc 350 |||||| | |||||||||||||| Sbjct: 102424 cgcgccagattcgacgacttccc 102446 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 360 gttcctcatggtggcgagcgcgatcgccgcggggtacctgctgctgtccctccccttctc 419 |||| |||| ||||||| |||||||| ||||||||| || | ||||| || |||||||| Sbjct: 102543 gttcttcattgtggcgaatgcgatcgcggcggggtacatggtactgtcgctgcccttctc 102602 Query: 420 cgccg 424 ||||| Sbjct: 102603 cgccg 102607
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 289 gacgagacgctctccgtcttcaccgagttct 319 ||||||||||||||||||||||||||||||| Sbjct: 115593 gacgagacgctctccgtcttcaccgagttct 115563
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 289 gacgagacgctctccgtcttcaccgagttct 319 ||||||||||||||||||||||||||||||| Sbjct: 23430057 gacgagacgctctccgtcttcaccgagttct 23430027
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 227 tcctgctgaggatcgcggcgttcgggccggcgctcg 262 |||||||| |||||||||||||||| ||||||||| Sbjct: 4509171 tcctgctggggatcgcggcgttcggcgcggcgctcg 4509136
>ref|XM_416911.1| PREDICTED: Gallus gallus similar to ring finger protein 149; DNA polymerase-transactivated protein 2 (LOC418712), mRNA Length = 2187 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 393 gtacctgctgctgtccctcccc 414 |||||||||||||||||||||| Sbjct: 961 gtacctgctgctgtccctcccc 982
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 408 cctccccttctccgccgtcgtc 429 |||||||||||||||||||||| Sbjct: 11331390 cctccccttctccgccgtcgtc 11331369
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 408 cctccccttctccgccgtcgtc 429 |||||||||||||||||||||| Sbjct: 19099 cctccccttctccgccgtcgtc 19078
>dbj|AK120604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013150B18, full insert sequence Length = 1871 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 cctccccttctccgccgtcgtc 429 |||||||||||||||||||||| Sbjct: 239 cctccccttctccgccgtcgtc 260
>dbj|AK102614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099D18, full insert sequence Length = 1868 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 cctccccttctccgccgtcgtc 429 |||||||||||||||||||||| Sbjct: 239 cctccccttctccgccgtcgtc 260
>dbj|AK060352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G01, full insert sequence Length = 941 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 cctccccttctccgccgtcgtc 429 |||||||||||||||||||||| Sbjct: 191 cctccccttctccgccgtcgtc 212
>ref|XM_510562.1| PREDICTED: Pan troglodytes similar to KIAA1330 protein (LOC453609), mRNA Length = 5586 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 acctgctgctgtccctcccct 415 ||||||||||||||||||||| Sbjct: 458 acctgctgctgtccctcccct 438
>ref|NM_193686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1305 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 116 cgcctccggctgccgccccagccgcggccgcga 148 ||||||||||||||| |||||||| ||||||| Sbjct: 678 cgcctccggctgccgtgccagccgccgccgcga 710
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ggcccccgcggcggcgccttc 113 ||||||||||||||||||||| Sbjct: 1895220 ggcccccgcggcggcgccttc 1895200
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 ggcgagcgcgatcgccgcggg 392 ||||||||||||||||||||| Sbjct: 3125648 ggcgagcgcgatcgccgcggg 3125628
>gb|AC185999.2| Pan troglodytes BAC clone CH251-186C12 from chromosome 9, complete sequence Length = 169499 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 ctgctgctgtccctccccttc 417 ||||||||||||||||||||| Sbjct: 27527 ctgctgctgtccctccccttc 27507
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ggcccccgcggcggcgccttc 113 ||||||||||||||||||||| Sbjct: 1534676 ggcccccgcggcggcgccttc 1534696
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 101 cggcggcgccttccgcgcctccggc 125 ||||||||||| ||||||||||||| Sbjct: 64828 cggcggcgcctgccgcgcctccggc 64804
>gb|AC183772.2| Pan troglodytes BAC clone CH251-73E21 from chromosome 9, complete sequence Length = 162544 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ctgctgctgtccctccccttc 417 ||||||||||||||||||||| Sbjct: 81586 ctgctgctgtccctccccttc 81606
>ref|XM_755648.1| Ustilago maydis 521 hypothetical protein (UM04594.1) partial mRNA Length = 1704 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 agccgcggccgcgacgacagc 155 ||||||||||||||||||||| Sbjct: 114 agccgcggccgcgacgacagc 94
>emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on chromosome 9 Contains a novel gene (FLJ33868) and 2 CpG islands, complete sequence Length = 174911 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cagccttcttgttcctcatgg 370 ||||||||||||||||||||| Sbjct: 43451 cagccttcttgttcctcatgg 43431
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ggcccccgcggcggcgccttc 113 ||||||||||||||||||||| Sbjct: 1421764 ggcccccgcggcggcgccttc 1421784
>gb|AC012291.11| Homo sapiens chromosome 15, clone RP11-7M10, complete sequence Length = 153602 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 acctgctgctgtccctcccct 415 ||||||||||||||||||||| Sbjct: 55996 acctgctgctgtccctcccct 56016
>gb|AC011485.6| Homo sapiens chromosome 19 clone CTB-164O19, complete sequence Length = 128618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ctgctgtccctccccttctcc 420 ||||||||||||||||||||| Sbjct: 41243 ctgctgtccctccccttctcc 41223
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 116 cgcctccggctgccgccccagccgcggccgcga 148 ||||||||||||||| |||||||| ||||||| Sbjct: 133806 cgcctccggctgccgtgccagccgccgccgcga 133838
>gb|AY044449.1| Homo sapiens muscle alpha-kinase (MAK) mRNA, complete cds Length = 7771 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 acctgctgctgtccctcccct 415 ||||||||||||||||||||| Sbjct: 625 acctgctgctgtccctcccct 605
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 116 cgcctccggctgccgccccagccgcggccgcga 148 ||||||||||||||| |||||||| ||||||| Sbjct: 18746360 cgcctccggctgccgtgccagccgccgccgcga 18746392
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 116 cgcctccggctgccgccccagccgcggccgcga 148 ||||||||||||||| |||||||| ||||||| Sbjct: 67877 cgcctccggctgccgtgccagccgccgccgcga 67909
>dbj|AK111464.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D04, full insert sequence Length = 1196 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 116 cgcctccggctgccgccccagccgcggccgcga 148 ||||||||||||||| |||||||| ||||||| Sbjct: 966 cgcctccggctgccgtgccagccgccgccgcga 998
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 ccgcgcctccggctgccgccc 133 ||||||||||||||||||||| Sbjct: 2471338 ccgcgcctccggctgccgccc 2471358
>ref|NM_020778.2| Homo sapiens alpha-kinase 3 (ALPK3), mRNA Length = 10914 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 acctgctgctgtccctcccct 415 ||||||||||||||||||||| Sbjct: 625 acctgctgctgtccctcccct 605
>gb|AC113300.7| Mus musculus chromosome 5, clone RP23-430C4, complete sequence Length = 176085 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 cccagccttcttgttcctca 367 |||||||||||||||||||| Sbjct: 101524 cccagccttcttgttcctca 101543
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgttcgggccggcgctcgcg 264 |||||||||||||||||||| Sbjct: 1369798 cgttcgggccggcgctcgcg 1369779
>ref|XM_472751.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 561 Score = 40.1 bits (20), Expect = 7.5 Identities = 50/60 (83%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||||||| ||||| || ||||||||||| || ||||||| ||||| |||||||| Sbjct: 127 gccatcgccatgggcaccaccaacgagacgctccccttcttcacgcagttcatccagttc 186
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acgtcgcccccggccagggcgcgc 85 |||||||||||||||| ||||||| Sbjct: 3437724 acgtcgcccccggccatggcgcgc 3437747
>ref|XM_868951.1| PREDICTED: Bos taurus similar to DNA polymerase zeta catalytic subunit (hREV3) (LOC616836), mRNA Length = 3429 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ggcgagcgcgatcgccgcgg 391 |||||||||||||||||||| Sbjct: 461 ggcgagcgcgatcgccgcgg 480
>gb|AE009110.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 136 of 256 of the complete sequence Length = 12023 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ggccgccaccgtcatccccg 55 |||||||||||||||||||| Sbjct: 8529 ggccgccaccgtcatccccg 8548
>gb|AF525691.2| Chlamydomonas reinhardtii RNA polymerase sigma factor (RpoD) gene, complete cds; nuclear gene for chloroplast product Length = 5013 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tgccgccccagccgcggccgcgac 149 ||||| |||||||||||||||||| Sbjct: 538 tgccggcccagccgcggccgcgac 515
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cggccatcgccaccggcacg 285 |||||||||||||||||||| Sbjct: 3236523 cggccatcgccaccggcacg 3236504
>emb|AL354944.22| Human DNA sequence from clone RP11-106H5 on chromosome 9 Contains the 3'end of the ZNF297B gene for zinc finger protein 297B (ZNF-X, FLJ22470, KIAA0414), the gene for a novel protein (KIAA1993) and a CpG island, complete sequence Length = 49144 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctccggctgccgccccagcc 138 |||||||||||||||||||| Sbjct: 24101 ctccggctgccgccccagcc 24082
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 cccgcggcggcgccttccgc 116 |||||||||||||||||||| Sbjct: 2129905 cccgcggcggcgccttccgc 2129924
>emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chromosome 10 Contains a ribosomal protein L21 (RPL21) pseudogene, the gene for J-domain containing protein 1 (JDP1), a ribosomal protein L12 (RPL12) pseudogene, a novel pseudogene, the SIRT1 gene for sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae), the 3' end of the gene for a novel protein (KIAA0032) and two CpG island, complete sequence Length = 175940 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tgctgtccctccccttctcc 420 |||||||||||||||||||| Sbjct: 84078 tgctgtccctccccttctcc 84059
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 gcgagcgcgatcgccgcggg 392 |||||||||||||||||||| Sbjct: 3002470 gcgagcgcgatcgccgcggg 3002489
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acgtcgcccccggccagggcgcgc 85 |||||||||||||||| ||||||| Sbjct: 322896 acgtcgcccccggccatggcgcgc 322919
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acgtcgcccccggccagggcgcgc 85 |||||||||||||||| ||||||| Sbjct: 273480 acgtcgcccccggccatggcgcgc 273503
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ggcgttcctcgacttcctgctgag 236 |||| ||||||||||||||||||| Sbjct: 164260 ggcgctcctcgacttcctgctgag 164283
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ccgcgacgacagctccgcgc 162 |||||||||||||||||||| Sbjct: 257085 ccgcgacgacagctccgcgc 257104
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 40.1 bits (20), Expect = 7.5 Identities = 50/60 (83%) Strand = Plus / Plus Query: 268 gccatcgccaccggcacgtccgacgagacgctctccgtcttcaccgagttcttccagttc 327 |||||||||| ||||| || ||||||||||| || ||||||| ||||| |||||||| Sbjct: 51785 gccatcgccatgggcaccaccaacgagacgctccccttcttcacgcagttcatccagttc 51844
>emb|AJ627180.1| Chlamydomonas reinhardtii sig1 gene for sigma-like transcription factor, exons 1-4 Length = 6047 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tgccgccccagccgcggccgcgac 149 ||||| |||||||||||||||||| Sbjct: 1802 tgccggcccagccgcggccgcgac 1779
>emb|AJ001224.1|AEALEO Ralstonia sp. CH34 aleO gene and orf333 Length = 4132 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cggccatcgccaccggcacg 285 |||||||||||||||||||| Sbjct: 3628 cggccatcgccaccggcacg 3609
>dbj|AB211543.1| Sphingomonas sp. A1 p7 gene for alginate-binding flagellin, complete cds Length = 825 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tccagcggagcgaccgcggc 201 |||||||||||||||||||| Sbjct: 86 tccagcggagcgaccgcggc 67
>dbj|AB232922.1| Oryzias latipes hox gene cluster, complete cds, contains hoxCa Length = 238642 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 caccccgtccccaaacatga 25 |||||||||||||||||||| Sbjct: 181991 caccccgtccccaaacatga 181972
>dbj|AB126026.1| Rhodomonas chrysoidea mRNA for symbiont actin, partial cds, strain:NIES-701 Length = 614 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ccttctccgccgtcgtcgtg 432 |||||||||||||||||||| Sbjct: 388 ccttctccgccgtcgtcgtg 369
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ggccgccaccgtcatccccg 55 |||||||||||||||||||| Sbjct: 1507120 ggccgccaccgtcatccccg 1507139
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cggcggccatcgccaccggc 282 |||||||||||||||||||| Sbjct: 1535016 cggcggccatcgccaccggc 1535035
>gb|AF284833.1|AF284833 Pyrenomonas helgolandii red alga-like actin mRNA, partial cds Length = 1155 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ccttctccgccgtcgtcgtg 432 |||||||||||||||||||| Sbjct: 646 ccttctccgccgtcgtcgtg 627
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cgctcgcggcggccatcgcc 276 |||||||||||||||||||| Sbjct: 4902681 cgctcgcggcggccatcgcc 4902700
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 tcgccaccggcacgtccgacgaga 295 |||||||||||||| ||||||||| Sbjct: 3525013 tcgccaccggcacgcccgacgaga 3525036 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ggcgagcgcgatcgccgcgg 391 |||||||||||||||||||| Sbjct: 3433191 ggcgagcgcgatcgccgcgg 3433172 Score = 40.1 bits (20), Expect = 7.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 255 ggcgctcgcggc-ggccatcgccaccgg 281 |||||||||||| ||||||||||||||| Sbjct: 501116 ggcgctcgcggccggccatcgccaccgg 501143
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 cgggccggcgctcgcggcggccatcgcc 276 |||| ||||| ||||||||||||||||| Sbjct: 5836780 cgggtcggcgttcgcggcggccatcgcc 5836807
>gb|AC109220.16| Mus musculus chromosome 7, clone RP23-84B11, complete sequence Length = 212018 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 acctgctgctgtccctcccc 414 |||||||||||||||||||| Sbjct: 157629 acctgctgctgtccctcccc 157648
>gb|AF118856.1|AF118856 Streptomyces noursei putative pleitropic regulator gene, partial cds; SsmA (ssmA) and SsmB precursor (ssmB) genes, complete cds; and putative AMP binding protein gene, partial cds Length = 1795 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ctcgcggcggccatcgccaccggc 282 |||||||||||||||||| ||||| Sbjct: 1051 ctcgcggcggccatcgccgccggc 1074
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gtcgcccccggccagggcgc 83 |||||||||||||||||||| Sbjct: 3354210 gtcgcccccggccagggcgc 3354191 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,343,072 Number of Sequences: 3902068 Number of extensions: 3343072 Number of successful extensions: 85441 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81507 Number of HSP's gapped (non-prelim): 3934 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
