ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart12a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 107 2e-23
2S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 106 4e-23
3VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 106 4e-23
4PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 102 1e-21
5VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 91 2e-18
6VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 90 4e-18
7CYF_PSINU (Q8WI07) Apocytochrome f precursor 35 0.19
8MMPL8_MYCTU (O07800) Putative membrane protein mmpL8 32 1.2
9HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane prote... 32 1.2
10PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (... 30 6.0
11K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment) 29 7.9
12RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2... 29 7.9

>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score =  107 bits (267), Expect = 2e-23
 Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
 Frame = +1

Query: 184 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVVID 360
           LR   G G+ +  V C S+ L VEAHN+R +KT+P  C      Y+ G  FR DSK V  
Sbjct: 28  LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87

Query: 361 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 540
           QA  Y    ++  N  ++++F ID T LSN+PYY KHG+G   FN T ++ +V +G APA
Sbjct: 88  QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145

Query: 541 LPET 552
           LPET
Sbjct: 146 LPET 149



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>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score =  106 bits (265), Expect = 4e-23
 Identities = 52/111 (46%), Positives = 71/111 (63%)
 Frame = +1

Query: 220 VACDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 399
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 37  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94

Query: 400 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPET 552
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APALPET
Sbjct: 95  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 145



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>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score =  106 bits (265), Expect = 4e-23
 Identities = 52/111 (46%), Positives = 71/111 (63%)
 Frame = +1

Query: 220 VACDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 399
           V C SW L VEAHN+  ++T+P  C      Y+ G  +R DSK V  QA  Y   L++  
Sbjct: 40  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97

Query: 400 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPET 552
           + K+ +VF ID T LSN+PYY KHG+G   FN+T ++ +V +G+APALPET
Sbjct: 98  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 148



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>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score =  102 bits (253), Expect = 1e-21
 Identities = 45/106 (42%), Positives = 66/106 (62%)
 Frame = +1

Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 405
           C +W   VE +N+  WKT+P  C   V  YM+G  ++ +   V D+A  Y  S+ L  +G
Sbjct: 43  CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102

Query: 406 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPAL 543
           ++VW+FD+DET LSNLPYY+ H +G   F+   F+ +V  G+APAL
Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPAL 148



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>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
 Frame = +1

Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 402
           C SW LGVE  N+ D+ TVPA+C+  V  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query: 403 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPE 549
              VW+FD+D+T LS++PYYAK+G+G    +  ++  ++  G S P LPE
Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPE 161



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>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 46/111 (41%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
 Frame = +1

Query: 226 CDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 402
           C SW LGVE  N+ ++ TVPA+C+  V  Y++ S  ++ DSK V  +A  Y   L L  +
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query: 403 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPET 552
              VW+FD+D+T LS++PYYAK+G+G       ++ +++  G S P LPET
Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPET 167



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>CYF_PSINU (Q8WI07) Apocytochrome f precursor|
          Length = 321

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +1

Query: 115 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 285
           V+I +P S     V EAVV  P    ++ +LG+GK  G+   + ++  E   +  +  +P
Sbjct: 66  VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125

Query: 286 ASCEGNVGHYMLGSHFRRDSKVVI 357
           A  +  +G   L  ++R D + +I
Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149



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>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8|
          Length = 1089

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 244 GVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 393
           G+  +N  D KT+PAS E ++G+  L  HF   S ++I + L    S  L
Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465



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>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP|
           P4)
          Length = 274

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = +1

Query: 316 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 468
           +LG ++ +DS     +ALAY          D  K+A   K+  V D+DET L N PY   
Sbjct: 41  VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98

Query: 469 HGFGATPFNATSFNAYVLQGSAPALP 546
                 PF+   +  +V    + A+P
Sbjct: 99  QVQNNKPFDGKDWTRWVDARQSRAVP 124



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>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 178 HALRPLLGSGKHA-GVACDSWVLGVEAHNVRDWKTVPASCEGNVGHYMLGSHFRRDSKVV 354
           H L  LL S  +  G++  +W++G  A N  DW +V     G    + L       S + 
Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266

Query: 355 IDQALAYVDSLKLAGNGKE 411
           ID+ +AY   L  A   KE
Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285



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>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 282 ARELRGQRRPLHARQPFPPRLQG-RHRPGPRL 374
           A++ R +RR L  R P PP +Q  R  P PRL
Sbjct: 752 AQKRRKRRRMLRERSPSPPTIQSKRQTPSPRL 783



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>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1081

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 169 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 261
           PLI   RPL+G+G  A +A DS ++ +   N
Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,307,224
Number of Sequences: 219361
Number of extensions: 967000
Number of successful extensions: 3525
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3510
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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