ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart12a04 |
|---|---|
| Clone Library Name | barley_pub |
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 33.5 bits (75), Expect = 0.46 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +3 Query: 213 AGRADPGHPLRPPREEHRQSPQGDLGGRQAEGPRMHWDWEED---RRGGDGHCQGQERGV 383 A RA PG P R P E + +L R+ PR H W+ D + GD + R V Sbjct: 812 ARRAWPGSPERAPGREGPYGRESELQQREHAPPREHAPWDADTERAKAGDAPRRHTHRPV 871 Query: 384 LVGE 395 GE Sbjct: 872 AEGE 875
>CDC73_CHICK (Q5ZLM0) Parafibromin (Cell division cycle protein 73 homolog)| Length = 531 Score = 32.7 bits (73), Expect = 0.79 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = -3 Query: 543 LKLL*SITSGHP-----GATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVP 379 L LL ++ HP ATE +P+ V DRKDLL TST+S I P Sbjct: 61 LFLLNNVHLSHPVYVRRAATENIPV-------VRRPDRKDLLAYLNGETSTSSSIDRSAP 113 Query: 378 LALGL 364 L +GL Sbjct: 114 LEIGL 118
>CRYD_SYNY3 (P77967) Cryptochrome DASH| Length = 489 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = +3 Query: 429 QEEDPCGHWSLHWL----RLPAQEEHLPWLLDA 515 Q+ DP G + HWL LP + H PWLL A Sbjct: 419 QQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSA 451
>FLGH_SALTY (P0A1N8) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 232 Score = 25.8 bits (55), Expect(2) = 2.0 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 329 PIPVHPRSLSLSSTEISLGRLPVFFSRRPERM 234 P+PV S+ S+ I+ G P+F RRP + Sbjct: 43 PVPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Score = 24.3 bits (51), Expect(2) = 2.0 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = -3 Query: 435 LPVRTL--GTSTASPIPPQVPLALG 367 +P + L G +TA PIP VP+A G Sbjct: 25 IPAKPLVQGATTAQPIPGPVPVANG 49
>FLGH_SALTI (P0A1N9) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 232 Score = 25.8 bits (55), Expect(2) = 2.0 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 329 PIPVHPRSLSLSSTEISLGRLPVFFSRRPERM 234 P+PV S+ S+ I+ G P+F RRP + Sbjct: 43 PVPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Score = 24.3 bits (51), Expect(2) = 2.0 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = -3 Query: 435 LPVRTL--GTSTASPIPPQVPLALG 367 +P + L G +TA PIP VP+A G Sbjct: 25 IPAKPLVQGATTAQPIPGPVPVANG 49
>FLGH_SALPA (Q5PGU6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 232 Score = 25.8 bits (55), Expect(2) = 2.0 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 329 PIPVHPRSLSLSSTEISLGRLPVFFSRRPERM 234 P+PV S+ S+ I+ G P+F RRP + Sbjct: 43 PVPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Score = 24.3 bits (51), Expect(2) = 2.0 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = -3 Query: 435 LPVRTL--GTSTASPIPPQVPLALG 367 +P + L G +TA PIP VP+A G Sbjct: 25 IPAKPLVQGATTAQPIPGPVPVANG 49
>FLGH_SALCH (Q57QH8) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 232 Score = 25.8 bits (55), Expect(2) = 2.0 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 329 PIPVHPRSLSLSSTEISLGRLPVFFSRRPERM 234 P+PV S+ S+ I+ G P+F RRP + Sbjct: 43 PVPVANGSIFQSAQPINYGYQPLFEDRRPRNI 74 Score = 24.3 bits (51), Expect(2) = 2.0 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = -3 Query: 435 LPVRTL--GTSTASPIPPQVPLALG 367 +P + L G +TA PIP VP+A G Sbjct: 25 IPAKPLVQGATTAQPIPGPVPVANG 49
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.8 bits (68), Expect = 3.0 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 14/84 (16%) Frame = -3 Query: 510 PGAT---EGVPLEPGAEASVNSND-----------RKDLLPVRTLGTSTASPIPPQVPLA 373 P AT +GV L P A A +N+ D + PV T+ + +P PL Sbjct: 526 PAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPAVSTPLP 585 Query: 372 LGLGNVHLRLGDLPPNPSASEVPQ 301 LGL + P P A+ PQ Sbjct: 586 LGLQQPQAQQPPQAPTPQAAAPPQ 609
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 30.4 bits (67), Expect = 3.9 Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Frame = -3 Query: 525 ITSGHPGATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPI--PPQVPLALGLGNVH 352 I+ P T VPL PGA V+ D++ + + ASP+ PPQ LG Sbjct: 2417 ISDTGPDNTSLVPLAPGAVV-VSHVIVWDIMAFNGIIHALASPLLMPPQTRAVLGS---- 2471 Query: 351 LRLGDLPPNPSASEVPQLVVHRDLLGEIAGVLLEEAGEDGPG 226 P P A + +V LLG +AG L A PG Sbjct: 2472 ------EPPPVALSLGVVVTSGTLLGLVAGALYLRARGKPPG 2507
>HRCA_MYCPU (Q98R68) Heat-inducible transcription repressor hrcA| Length = 347 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +1 Query: 259 NTGNLPKEISVDDKLRDLGCTGIGRKIAEAEMDIAKAKS 375 N+ L K+IS+D+K+R++ G +MD AKAKS Sbjct: 290 NSSFLSKKISIDNKIREISVVG------SKKMDYAKAKS 322
>VE4_HPV05 (P06924) Probable protein E4| Length = 245 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/52 (36%), Positives = 22/52 (42%) Frame = +3 Query: 225 DPGHPLRPPREEHRQSPQGDLGGRQAEGPRMHWDWEEDRRGGDGHCQGQERG 380 D GHP PP H + +Q EGP EE GG+G G E G Sbjct: 144 DQGHPPPPPPAPHNGHSGHEPKVQQPEGPEGREGHEEGAVGGEG---GDEEG 192
>DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)| Length = 620 Score = 30.0 bits (66), Expect = 5.1 Identities = 28/90 (31%), Positives = 38/90 (42%) Frame = -3 Query: 510 PGATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVPLALGLGNVHLRLGDLP 331 PGA P PG + N+ P RT S + IPP VP AL + N++ G P Sbjct: 273 PGAPPRSPGAPGGARTPGQNNLNRPGPQRTTSVSARASIPPGVP-ALPVKNLN---GTGP 328 Query: 330 PNPSASEVPQLVVHRDLLGEIAGVLLEEAG 241 +P+ L + G+LL AG Sbjct: 329 VHPA-------------LAGMTGILLCAAG 345
>PEPB_PHOLL (Q7N231) Peptidase B (EC 3.4.11.23) (Aminopeptidase B)| Length = 431 Score = 30.0 bits (66), Expect = 5.1 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = +3 Query: 363 QGQERGVLVGE-WD----WRYWYRGF*QEEDPCGHWSLHWLRLPAQEE 491 QG LVGE WD W +W +GF P G+ S+ W +LPA E+ Sbjct: 55 QGIRHVALVGEGWDLEKSWAFW-QGF---RAPKGNRSIEWPQLPAAEK 98
>COLT_DROME (Q9VQG4) Congested-like trachea protein| Length = 306 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = +1 Query: 199 AGRLWQDAQTRAILSGLLEKNTGNLPKEISVDDKLRDLGCTGIGRKIAEAEMDIAKAKSE 378 AG+L+++ R++ G S LRDL G+ + EA D+AK+KSE Sbjct: 162 AGKLYKEGGLRSVFKG-------------SCATMLRDLPANGLYFLVYEALQDVAKSKSE 208
>Y719_HAEIN (P44839) UPF0076 protein HI0719| Length = 130 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -3 Query: 375 ALGLGNVHLRLGDLPPNPSASEVP-QLVVHRDLLGEIAGVLLEEAG 241 A+ LGN+ L G +P NP+ EVP +V E ++E+AG Sbjct: 21 AVDLGNLVLTSGQIPVNPATGEVPADIVAQARQSLENVKAIIEKAG 66
>PRLR_ORENI (Q91513) Prolactin receptor precursor (PRL-R)| Length = 630 Score = 29.6 bits (65), Expect = 6.7 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +3 Query: 246 PPREEHRQSPQGDLGGRQAEGPRMHWDWE 332 P E+ +Q+ +GD G++ +GP+ W+ E Sbjct: 367 PKEEQQQQNQEGDQIGKETQGPKEAWEKE 395
>GLB1_MAIZE (P15590) Globulin-1 S allele precursor (GLB1-S) (7S-like)| Length = 573 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +3 Query: 231 GHPLRPPREEHRQSPQGDLGGRQAEGPRMHWDWEEDRRGGDGHCQGQE 374 GH R EE R+ G G R+ G EE+R G G + +E Sbjct: 513 GHEEREQEEEEREERHGGRGERERHGREEREKEEEEREGRHGRGRREE 560
>FA62A_RAT (Q9Z1X1) Protein FAM62A (Membrane bound C2 domain-containing| protein) (vp115) Length = 1088 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = -3 Query: 363 GNVHLRLGDLPPNPSASEVPQLVVHRDLL-----GEIAGVLLE---EAGEDGP 229 G +HLRL L P P+A+E+ +++ L+ E+A LL E ED P Sbjct: 748 GRLHLRLERLSPRPTAAELEEVLQVNSLIQTQKSSELAAALLSVYLERSEDLP 800
>MAGE1_HUMAN (Q9HCI5) Melanoma-associated antigen E1 (MAGE-E1 antigen)| (Hepatocellular carcinoma-associated protein 1) Length = 957 Score = 29.3 bits (64), Expect = 8.7 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 4/110 (3%) Frame = -3 Query: 522 TSGHPGATE----GVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVPLALGLGNV 355 TS P ATE VP PG S + +LP+ G ST+ P P A + Sbjct: 330 TSVPPTATEELSTSVPPTPGEGPSTS------VLPIPGEGLSTSVP-----PTASDGSDT 378 Query: 354 HLRLGDLPPNPSASEVPQLVVHRDLLGEIAGVLLEEAGEDGPGLRVLP*P 205 +PP P GE A L++ DGPG VLP P Sbjct: 379 -----SVPPTP---------------GEGASTLVQPTAPDGPGSSVLPNP 408
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = -3 Query: 363 GNVHLRLGDLPPNPSASEVPQLVVHRDLL-----GEIAGVLLE---EAGEDGP 229 G +HLRL L P P+A+E+ +++ L+ E+A LL E ED P Sbjct: 759 GRLHLRLERLTPRPTAAELEEVLQVNSLIQTQKSAELAAALLSIYMERAEDLP 811
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = -3 Query: 363 GNVHLRLGDLPPNPSASEVPQLVVHRDLL-----GEIAGVLLE---EAGEDGP 229 G +HLRL L P P+A+E+ +++ L+ E+A LL E ED P Sbjct: 759 GRLHLRLERLTPRPTAAELEEVLQVNSLIQTQKSAELAAALLSIYMERAEDLP 811
>CDC73_RAT (Q4V8C8) Parafibromin (Cell division cycle protein 73 homolog)| (Hyperparathyroidism 2 protein homolog) Length = 531 Score = 29.3 bits (64), Expect = 8.7 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -3 Query: 543 LKLL*SITSGHP-----GATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVP 379 L LL ++ HP ATE +P+ V DRKDLL ST++ I P Sbjct: 61 LFLLNNVHLSHPVYVRRAATENIPV-------VRRPDRKDLLGYLNGEASTSASIDRSAP 113 Query: 378 LALGL 364 L +GL Sbjct: 114 LEIGL 118
>CDC73_MOUSE (Q8JZM7) Parafibromin (Cell division cycle protein 73 homolog)| (Hyperparathyroidism 2 protein homolog) Length = 531 Score = 29.3 bits (64), Expect = 8.7 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -3 Query: 543 LKLL*SITSGHP-----GATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVP 379 L LL ++ HP ATE +P+ V DRKDLL ST++ I P Sbjct: 61 LFLLNNVHLSHPVYVRRAATENIPV-------VRRPDRKDLLGYLNGEASTSASIDRSAP 113 Query: 378 LALGL 364 L +GL Sbjct: 114 LEIGL 118
>CDC73_HUMAN (Q6P1J9) Parafibromin (Cell division cycle protein 73 homolog)| (Hyperparathyroidism 2 protein) Length = 531 Score = 29.3 bits (64), Expect = 8.7 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -3 Query: 543 LKLL*SITSGHP-----GATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVP 379 L LL ++ HP ATE +P+ V DRKDLL ST++ I P Sbjct: 61 LFLLNNVHLSHPVYVRRAATENIPV-------VRRPDRKDLLGYLNGEASTSASIDRSAP 113 Query: 378 LALGL 364 L +GL Sbjct: 114 LEIGL 118
>TR10A_HUMAN (O00220) Tumor necrosis factor receptor superfamily member 10A| precursor (Death receptor 4) (TNF-related apoptosis-inducing ligand receptor 1) (TRAIL receptor 1) (TRAIL-R1) (CD261 antigen) Length = 468 Score = 29.3 bits (64), Expect = 8.7 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Frame = -3 Query: 513 HPGATEGVPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQ------VPLALGLG--N 358 H GA V PG+ AS + P + G+S A I P+ +P ++G + Sbjct: 9 HLGAFLAVTPNPGSAAS--GTEAAAATPSKVWGSS-AGRIEPRGGGRGALPTSMGQHGPS 65 Query: 357 VHLRLGDLP-PNPSASEVPQLVVHRDLLGEIAGVLLE 250 R G P P P+ P+L VH+ + GVLL+ Sbjct: 66 ARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQ 102
>FA62A_MOUSE (Q3U7R1) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1092 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = -3 Query: 363 GNVHLRLGDLPPNPSASEVPQLVVHRDLL-----GEIAGVLLE---EAGEDGP 229 G +HLRL L P P+A+E+ +++ L+ E+A LL E ED P Sbjct: 746 GRLHLRLERLTPRPTAAELEEVLQVNSLIQTQKSSELAAALLSVFLERAEDLP 798
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 29.3 bits (64), Expect = 8.7 Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = -3 Query: 528 SITSGHPGATEG---VPLEPGAEASVNSNDRKDLLPVRTLGTSTASPIPPQVPLALGLGN 358 S G AT G + L PGA S S D +PV A P PP P L + Sbjct: 14 SALGGAAAATPGGLSLSLSPGASGSSGSGSDGDSVPV---SPQPAPPSPPAAPCLPPLAH 70 Query: 357 VHLRLGDLPPNP 322 H L PP P Sbjct: 71 -HPHLPPHPPPP 81
>Y1466_PASMU (Q9L6B5) Hypothetical UPF0076 protein PM1466| Length = 129 Score = 29.3 bits (64), Expect = 8.7 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -3 Query: 375 ALGLGNVHLRLGDLPPNPSASEVP-QLVVHRDLLGEIAGVLLEEAG 241 A+ LGN+ L G +P NP EVP +V E ++E+AG Sbjct: 20 AVDLGNMLLTSGQIPVNPKTGEVPADIVAQARQSLENVKAIVEQAG 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,973,135 Number of Sequences: 219361 Number of extensions: 1542831 Number of successful extensions: 5354 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5346 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
