ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11h05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476066.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttccacggc 563 |||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct: 421 gccgtgttctggatccagccgaccaccgcgctcgccgcgtactaccactacttccgcggc 480
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttccacggc 563 |||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct: 110618 gccgtgttctggatccagccgaccaccgcgctcgccgcgtactaccactacttccgcggc 110559
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttccacggc 563 |||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct: 4742613 gccgtgttctggatccagccgaccaccgcgctcgccgcgtactaccactacttccgcggc 4742554 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 cctcccggtgtccgctcaccgccgc 236 ||||||||||||||| ||||||||| Sbjct: 9288618 cctcccggtgtccgcccaccgccgc 9288642
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttccacggc 563 |||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| Sbjct: 15021 gccgtgttctggatccagccgaccaccgcgctcgccgcgtactaccactacttccgcggc 14962
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 494 catcccgctggccgtgttctggctccagccggccaccgtgctcgccgcgtactaccacta 553 ||||||||| | |||||||||| |||||||||||||||||| || || ||||| ||||| Sbjct: 123224 catcccgctagtcgtgttctggaaccagccggccaccgtgcttgcagcttactatcacta 123165 Query: 554 cttccacggc 563 || ||||||| Sbjct: 123164 ctaccacggc 123155 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 99 cacttcctcatcgtggcctacggcatccagagccacctcaaccc 142 |||||||| || || |||||||||||||| |||||| ||||||| Sbjct: 123613 cacttccttattgtagcctacggcatccaaagccacatcaaccc 123570
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 494 catcccgctggccgtgttctggctccagccggccaccgtgctcgccgcgtactaccacta 553 ||||||||| | |||||||||| |||||||||||||||||| || || ||||| ||||| Sbjct: 2051669 catcccgctagtcgtgttctggaaccagccggccaccgtgcttgcagcttactatcacta 2051610 Query: 554 cttccacggc 563 || ||||||| Sbjct: 2051609 ctaccacggc 2051600 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 99 cacttcctcatcgtggcctacggcatccagagccacctcaaccc 142 |||||||| || || |||||||||||||| |||||| ||||||| Sbjct: 2052058 cacttccttattgtagcctacggcatccaaagccacatcaaccc 2052015
>dbj|AK107669.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H07, full insert sequence Length = 1577 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 494 catcccgctggccgtgttctggctccagccggccaccgtgctcgccgcgtactaccacta 553 ||||||||| | |||||||||| |||||||||||||||||| || || ||||| ||||| Sbjct: 524 catcccgctagtcgtgttctggaaccagccggccaccgtgcttgcagcttactatcacta 583 Query: 554 cttccacggc 563 || ||||||| Sbjct: 584 ctaccacggc 593 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Plus Query: 99 cacttcctcatcgtggcctacggcatccagagccacctcaaccc 142 |||||||| || || |||||||||||||| |||||| ||||||| Sbjct: 135 cacttccttattgtagcctacggcatccaaagccacatcaaccc 178
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 494 catcccgctggccgtgttctggctccagccggccaccgtgctcgccgcgtactaccacta 553 ||||||||| | |||||||||| |||||||||||||||||| || || ||||| ||||| Sbjct: 2059450 catcccgctagtcgtgttctggaaccagccggccaccgtgcttgcagcttactatcacta 2059391 Query: 554 cttccacggc 563 || ||||||| Sbjct: 2059390 ctaccacggc 2059381 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 99 cacttcctcatcgtggcctacggcatccagagccacctcaaccc 142 |||||||| || || |||||||||||||| |||||| ||||||| Sbjct: 2059839 cacttccttattgtagcctacggcatccaaagccacatcaaccc 2059796
>ref|XM_464540.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 474 gacgtcgcgcgtgagcacgccatcccgctggccgtgttctggctccagccggccaccgtg 533 ||||||||||| |||| || |||||||| || | | |||| |||||||||| ||| || Sbjct: 400 gacgtcgcgcgcgagcgcggcatcccgcgggtgctctactggatccagccggcgaccatg 459 Query: 534 ctcgccgcgtactaccactacttccacgg 562 ||||||| ||||||||||||| ||||||| Sbjct: 460 ctcgccgtgtactaccactacctccacgg 488
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 474 gacgtcgcgcgtgagcacgccatcccgctggccgtgttctggctccagccggccaccgtg 533 ||||||||||| |||| || |||||||| || | | |||| |||||||||| ||| || Sbjct: 5776348 gacgtcgcgcgcgagcgcggcatcccgcgggtgctctactggatccagccggcgaccatg 5776407 Query: 534 ctcgccgcgtactaccactacttccacgg 562 ||||||| ||||||||||||| ||||||| Sbjct: 5776408 ctcgccgtgtactaccactacctccacgg 5776436
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 474 gacgtcgcgcgtgagcacgccatcccgctggccgtgttctggctccagccggccaccgtg 533 ||||||||||| |||| || |||||||| || | | |||| |||||||||| ||| || Sbjct: 6150 gacgtcgcgcgcgagcgcggcatcccgcgggtgctctactggatccagccggcgaccatg 6209 Query: 534 ctcgccgcgtactaccactacttccacgg 562 ||||||| ||||||||||||| ||||||| Sbjct: 6210 ctcgccgtgtactaccactacctccacgg 6238
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 474 gacgtcgcgcgtgagcacgccatcccgctggccgtgttctggctccagccggccaccgtg 533 ||||||||||| |||| || |||||||| || | | |||| |||||||||| ||| || Sbjct: 65862 gacgtcgcgcgcgagcgcggcatcccgcgggtgctctactggatccagccggcgaccatg 65921 Query: 534 ctcgccgcgtactaccactacttccacgg 562 ||||||| ||||||||||||| ||||||| Sbjct: 65922 ctcgccgtgtactaccactacctccacgg 65950
>dbj|AK120020.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C02, full insert sequence Length = 1581 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 474 gacgtcgcgcgtgagcacgccatcccgctggccgtgttctggctccagccggccaccgtg 533 ||||||||||| |||| || |||||||| || | | |||| |||||||||| ||| || Sbjct: 957 gacgtcgcgcgcgagcgcggcatcccgcgggtgctctactggatccagccggcgaccatg 898 Query: 534 ctcgccgcgtactaccactacttccacgg 562 ||||||| ||||||||||||| ||||||| Sbjct: 897 ctcgccgtgtactaccactacctccacgg 869
>ref|XM_550389.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1455 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 512 ctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||| ||||||||||| ||||||||||||| |||| ||||||||||| Sbjct: 447 ctggatccagccggccgccgtgctcgccgcctacttccactacttcc 493
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 512 ctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||| ||||||||||| ||||||||||||| |||| ||||||||||| Sbjct: 4153197 ctggatccagccggccgccgtgctcgccgcctacttccactacttcc 4153151 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 tccgccgtcgtcgccaccctcgccg 417 ||||||| ||||||||||||||||| Sbjct: 3636510 tccgccgccgtcgccaccctcgccg 3636534
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 512 ctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||| ||||||||||| ||||||||||||| |||| ||||||||||| Sbjct: 100168 ctggatccagccggccgccgtgctcgccgcctacttccactacttcc 100122
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Minus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||||||||| | ||||| | ||||| ||| |||||||||||||||||||||| Sbjct: 4090947 gccgtgttctagttccagtcaaccaccacgctggccgcgtactaccactacttcc 4090893 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 3324154 gccaccgacggcgtcgtctc 3324173
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Plus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||||||||| | ||||| | ||||| ||| |||||||||||||||||||||| Sbjct: 8421 gccgtgttctagttccagtcaaccaccacgctggccgcgtactaccactacttcc 8475
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 520 agccggccaccgtgctcgccgcg 542 ||||||||||||||||||||||| Sbjct: 2678065 agccggccaccgtgctcgccgcg 2678043
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.12 Identities = 47/55 (85%) Strand = Plus / Minus Query: 504 gccgtgttctggctccagccggccaccgtgctcgccgcgtactaccactacttcc 558 |||||||||| | ||||| | ||||| ||| |||||||||||||||||||||| Sbjct: 4091058 gccgtgttctagttccagtcaaccaccacgctggccgcgtactaccactacttcc 4091004 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 3324265 gccaccgacggcgtcgtctc 3324284
>gb|AY557956.1| Saccharomyces cerevisiae clone FLH004813.01X YLR215C gene, complete cds Length = 1083 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 acgatgaggataccgccaccga 286 |||||||||||||||||||||| Sbjct: 257 acgatgaggataccgccaccga 278
>gb|U14913.2|YSCH8167 Saccharomyces cerevisiae chromosome XII cosmid 8167 Length = 38870 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 acgatgaggataccgccaccga 286 |||||||||||||||||||||| Sbjct: 33228 acgatgaggataccgccaccga 33207
>tpg|BK005577.1| TPA: TPA_exp: Saccharomyces cerevisiae cell division cycle protein 123 (CDC123) gene, complete cds Length = 2100 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 acgatgaggataccgccaccga 286 |||||||||||||||||||||| Sbjct: 1088 acgatgaggataccgccaccga 1109
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 gccgtcgtcgccaccctcgccg 417 |||||||||||||||||||||| Sbjct: 17487316 gccgtcgtcgccaccctcgccg 17487295
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 535 tcgccgcgtactaccactacttccacggcc 564 |||||| |||||||||||||||||| |||| Sbjct: 22927115 tcgccgtgtactaccactacttccatggcc 22927144
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 535 tcgccgcgtactaccactacttccacggcc 564 |||||| |||||||||||||||||| |||| Sbjct: 101937 tcgccgtgtactaccactacttccatggcc 101966
>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14 Length = 127570 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 gccgtcgtcgccaccctcgccg 417 |||||||||||||||||||||| Sbjct: 51494 gccgtcgtcgccaccctcgccg 51473
>dbj|AK060513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F01, full insert sequence Length = 1734 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 535 tcgccgcgtactaccactacttccacggcc 564 |||||| |||||||||||||||||| |||| Sbjct: 497 tcgccgtgtactaccactacttccatggcc 526
>ref|XM_550273.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1943 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 tccgccgtcgtcgccaccctcgccg 417 ||||||| ||||||||||||||||| Sbjct: 766 tccgccgccgtcgccaccctcgccg 742
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, complete sequence Length = 146677 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 cctcccggtgtccgctcaccgccgc 236 ||||||||||||||| ||||||||| Sbjct: 60563 cctcccggtgtccgcccaccgccgc 60587
>gb|AC102124.16| Mus musculus chromosome 18, clone RP23-188D1, complete sequence Length = 222450 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 cttccttcatttcttctcttt 32 ||||||||||||||||||||| Sbjct: 133967 cttccttcatttcttctcttt 133947
>gb|AE008941.1| Agrobacterium tumefaciens str. C58 AT plasmid section 16 of 49 of the complete sequence Length = 10614 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 384 gagagcctgtccgccgtcgtcgcca 408 ||||||||||||||| ||||||||| Sbjct: 9888 gagagcctgtccgccatcgtcgcca 9912
>gb|AE007889.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 17 of 50 of the complete sequence Length = 10451 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 384 gagagcctgtccgccgtcgtcgcca 408 ||||||||||||||| ||||||||| Sbjct: 5220 gagagcctgtccgccatcgtcgcca 5244
>emb|CR726944.2|CNS0GNUU Tetraodon nigroviridis full-length cDNA Length = 1296 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 agcaaatacttccttcatttcttct 28 ||||||||||||||| ||||||||| Sbjct: 31 agcaaatacttccttaatttcttct 7
>emb|CR635522.1|CNS0EPC8 Tetraodon nigroviridis full-length cDNA Length = 1351 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 agcaaatacttccttcatttcttct 28 ||||||||||||||| ||||||||| Sbjct: 30 agcaaatacttccttaatttcttct 6
>emb|CR634021.1|CNS0EO6J Tetraodon nigroviridis full-length cDNA Length = 1343 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 agcaaatacttccttcatttcttct 28 ||||||||||||||| ||||||||| Sbjct: 29 agcaaatacttccttaatttcttct 5
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 394 ccgccgtcgtcgccaccctcgccgc 418 ||||||||| ||||||||||||||| Sbjct: 852636 ccgccgtcgacgccaccctcgccgc 852612
>emb|AL031224.1|HS336H9 Human DNA sequence from clone RP3-336H9 on chromosome 6p12.1-21.1 Contains the 5' end of the TFAP2B gene for transcription factor AP-2 beta (activating enhancer-binding protein 2 beta), the gene for a novel transcription factor AP-2 LIKE gene and three CpG islands, complete sequence Length = 131673 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cttccttcatttcttctcttt 32 ||||||||||||||||||||| Sbjct: 121651 cttccttcatttcttctcttt 121671
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 cgacggctccgggcccgtcct 199 ||||||||||||||||||||| Sbjct: 218791 cgacggctccgggcccgtcct 218771
>gb|AC092965.4| Homo sapiens 3 BAC RP11-440K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187033 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ccttcatttcttctctttgta 35 ||||||||||||||||||||| Sbjct: 136584 ccttcatttcttctctttgta 136564
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 tcgtcgccaccctcgccgcac 420 ||||||||||||||||||||| Sbjct: 3385240 tcgtcgccaccctcgccgcac 3385260
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 tccgccgtcgtcgccaccctcgccg 417 ||||||| ||||||||||||||||| Sbjct: 44990 tccgccgccgtcgccaccctcgccg 45014
>dbj|AB028616.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15 Length = 86139 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 tacttccttcatttcttctctttgt 34 |||||||||| |||||||||||||| Sbjct: 19803 tacttccttcttttcttctctttgt 19827
>dbj|AK106837.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G08, full insert sequence Length = 1941 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 393 tccgccgtcgtcgccaccctcgccg 417 ||||||| ||||||||||||||||| Sbjct: 765 tccgccgccgtcgccaccctcgccg 741
>emb|AJ323220.1|HSA323220 Homo sapiens genomic sequence surrounding NotI site, clone NB1-093R Length = 477 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 gccgtcgtcgccaccctcgcc 416 ||||||||||||||||||||| Sbjct: 3 gccgtcgtcgccaccctcgcc 23
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 ctgtccgccgtcgtcgccacc 410 ||||||||||||||||||||| Sbjct: 1138313 ctgtccgccgtcgtcgccacc 1138293
>gb|AC148001.6| Mus musculus BAC clone RP24-82P9 from chromosome 18, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acttccttcatttcttctct 30 |||||||||||||||||||| Sbjct: 38410 acttccttcatttcttctct 38429
>ref|NM_187764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1140 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 148 gccaccgacggcgtcgtctc 167
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ctcgcgcaccgcctcgcgcg 172 |||||||||||||||||||| Sbjct: 1859430 ctcgcgcaccgcctcgcgcg 1859449
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctcgcgcaccgcctcgcgcg 172 |||||||||||||||||||| Sbjct: 1605757 ctcgcgcaccgcctcgcgcg 1605738
>gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence Length = 149907 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 tctccctcccggtgtccgctcacc 231 ||||||||||||||||| |||||| Sbjct: 89997 tctccctcccggtgtcctctcacc 89974
>ref|XR_003001.1| PREDICTED: Mus musculus similar to Ferritin light chain 1 (Ferritin L subunit 1) (LOC633647), mRNA Length = 555 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 111 gtggcctacggcatccagagccacctca 138 |||||||||| | ||||||||||||||| Sbjct: 156 gtggcctacgccctccagagccacctca 129
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 ggacgtcgcgcgtgagcacg 492 |||||||||||||||||||| Sbjct: 3309319 ggacgtcgcgcgtgagcacg 3309300
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 cctcgccgcacgtggccggc 429 |||||||||||||||||||| Sbjct: 4225037 cctcgccgcacgtggccggc 4225018
>gb|AC102102.7| Mus musculus chromosome 16, clone RP23-79F12, complete sequence Length = 194828 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 acttccttcatttcttctctttgt 34 ||||||||||||||| |||||||| Sbjct: 190411 acttccttcatttctgctctttgt 190434
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence Length = 207763 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 111 gtggcctacggcatccagagccacctca 138 |||||||||| | ||||||||||||||| Sbjct: 160131 gtggcctacgccctccagagccacctca 160158
>gb|AY344489.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF7 mRNA, complete cds Length = 1403 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 224 gccaccgacggcgtcgtctc 243
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 gagcacgccatcccgctggc 505 |||||||||||||||||||| Sbjct: 1195081 gagcacgccatcccgctggc 1195100
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 105060 gccaccgacggcgtcgtctc 105041
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctcgcgcaccgcctcgcgcg 172 |||||||||||||||||||| Sbjct: 1492894 ctcgcgcaccgcctcgcgcg 1492875
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 gccaccctcgccgcacgtgg 424 |||||||||||||||||||| Sbjct: 898532 gccaccctcgccgcacgtgg 898551
>gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosome 16, complete sequence Length = 180782 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 acttccttcatttcttctctttgt 34 ||||||||||||||| |||||||| Sbjct: 132220 acttccttcatttctgctctttgt 132197
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cctcgcgcaccgcctcgcgc 171 |||||||||||||||||||| Sbjct: 7865699 cctcgcgcaccgcctcgcgc 7865718
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 cgccgtcgtcgccaccctcgccgc 418 ||||||||||||| |||||||||| Sbjct: 2672023 cgccgtcgtcgccgccctcgccgc 2672000
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 accgccaccgacggcgtcgt 295 |||||||||||||||||||| Sbjct: 5347010 accgccaccgacggcgtcgt 5346991
>gb|AE005048.1| Halobacterium sp. NRC-1 section 79 of 170 of the complete genome Length = 10225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctcgcgcaccgcctcgcgcg 172 |||||||||||||||||||| Sbjct: 52 ctcgcgcaccgcctcgcgcg 33
>gb|AE005047.1| Halobacterium sp. NRC-1 section 78 of 170 of the complete genome Length = 11170 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctcgcgcaccgcctcgcgcg 172 |||||||||||||||||||| Sbjct: 11162 ctcgcgcaccgcctcgcgcg 11143
>gb|AF074603.2|AF074603 Streptomyces griseus subsp. griseus nonactin biosynthesis gene cluster, partial sequence Length = 15559 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgcacaccggccaccacttc 104 |||||||||||||||||||| Sbjct: 11784 tgcacaccggccaccacttc 11803
>dbj|AK066844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J01, full insert sequence Length = 2272 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gccaccgacggcgtcgtctc 298 |||||||||||||||||||| Sbjct: 203 gccaccgacggcgtcgtctc 222
>gb|AC130536.4| Mus musculus BAC clone RP23-369M17 from 13, complete sequence Length = 188021 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 ttctccccgcagcgctggac 476 |||||||||||||||||||| Sbjct: 82646 ttctccccgcagcgctggac 82627
>gb|AF064522.1|AF064522 Moraxella sp. CK-1 major autolysin (cwlA) gene, complete cds Length = 1030 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 cctcgccgcacgtggccggc 429 |||||||||||||||||||| Sbjct: 797 cctcgccgcacgtggccggc 816
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cttccttcatttcttctctt 31 |||||||||||||||||||| Sbjct: 706870 cttccttcatttcttctctt 706851
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cttccttcatttcttctctt 31 |||||||||||||||||||| Sbjct: 166598 cttccttcatttcttctctt 166579
>gb|M75853.1|STMNONR Streptomyces griseus macrotetrolide antibiotic-resistance protein (nonR) gene, complete cds Length = 3332 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgcacaccggccaccacttc 104 |||||||||||||||||||| Sbjct: 2706 tgcacaccggccaccacttc 2725
>emb|AL670259.6| Mouse DNA sequence from clone RP23-321M16 on chromosome 4, complete sequence Length = 124565 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cttccttcatttcttctctt 31 |||||||||||||||||||| Sbjct: 99652 cttccttcatttcttctctt 99633 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,486,776 Number of Sequences: 3902068 Number of extensions: 3486776 Number of successful extensions: 88969 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85883 Number of HSP's gapped (non-prelim): 3081 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
