ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart11h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 104 2e-22
2S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 101 1e-21
3VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 101 1e-21
4VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 101 2e-21
5VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 89 6e-18
6VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 89 1e-17
7CYF_PSINU (Q8WI07) Apocytochrome f precursor 33 0.70
8HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane prote... 33 0.70
9MMPL8_MYCTU (O07800) Putative membrane protein mmpL8 29 7.8
10RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2... 29 7.8
11PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (... 29 7.8

>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score =  104 bits (259), Expect = 2e-22
 Identities = 45/106 (42%), Positives = 67/106 (63%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLKLAGNG 406
           C +W   VE +N+  W+T+P  C  YV  YM+G  ++ +   V D+A  Y  S+ L  +G
Sbjct: 43  CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102

Query: 407 KEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQGSAPAL 544
           ++VW+FD+DET LSNLPYY+ H +G   F+   F+ +V  G+APAL
Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPAL 148



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>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score =  101 bits (252), Expect = 1e-21
 Identities = 50/111 (45%), Positives = 68/111 (61%)
 Frame = +2

Query: 221 VACDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLKLAG 400
           V C SW L VEAHN+  + T+P  C      Y+ G  +R DS  V  QA  Y   L++  
Sbjct: 37  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94

Query: 401 NGKEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQGSAPALPET 553
           + K+ +VF ID T LSN+PYY  HG+G   FN+T ++ +V +G+APALPET
Sbjct: 95  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 145



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>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score =  101 bits (252), Expect = 1e-21
 Identities = 50/111 (45%), Positives = 68/111 (61%)
 Frame = +2

Query: 221 VACDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLKLAG 400
           V C SW L VEAHN+  + T+P  C      Y+ G  +R DS  V  QA  Y   L++  
Sbjct: 40  VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97

Query: 401 NGKEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQGSAPALPET 553
           + K+ +VF ID T LSN+PYY  HG+G   FN+T ++ +V +G+APALPET
Sbjct: 98  HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 148



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>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score =  101 bits (251), Expect = 2e-21
 Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
 Frame = +2

Query: 185 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVVID 361
           LR   G G+ +  V C S+ L VEAHN+R ++T+P  C      Y+ G  FR DS  V  
Sbjct: 28  LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87

Query: 362 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQGSAPA 541
           QA  Y    ++  N  ++++F ID T LSN+PYY  HG+G   FN T ++ +V +G APA
Sbjct: 88  QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145

Query: 542 LPET 553
           LPET
Sbjct: 146 LPET 149



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>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGS-HFRRDSXVVIDQALAYVDSLKLAGN 403
           C SW LGVE  N+ D+ TVPA+C+ YV  Y++ S  ++ DS  V  +A  Y   L L  +
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query: 404 GKEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQG-SAPALPE 550
              VW+FD+D+T LS++PYYA +G+G    +  ++  ++  G S P LPE
Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPE 161



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>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
 Frame = +2

Query: 227 CDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGS-HFRRDSXVVIDQALAYVDSLKLAGN 403
           C SW LGVE  N+ ++ TVPA+C+ YV  Y++ S  ++ DS  V  +A  Y   L L  +
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query: 404 GKEVWVFDIDETTLSNLPYYAXHGFGATPFNATSFNAYVLQG-SAPALPET 553
              VW+FD+D+T LS++PYYA +G+G       ++ +++  G S P LPET
Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPET 167



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>CYF_PSINU (Q8WI07) Apocytochrome f precursor|
          Length = 321

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = +2

Query: 116 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWRTVP 286
           V+I +P S     V EAVV  P    ++ +LG+GK  G+   + ++  E   +  +  +P
Sbjct: 66  VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125

Query: 287 ASCEGYVGHYMLGSHFRRDSXVVI 358
           A  +  +G   L  ++R D   +I
Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149



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>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP|
           P4)
          Length = 274

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = +2

Query: 317 MLGSHFRRDSXVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAX 469
           +LG ++ +DS     +ALAY          D  K+A   K+  V D+DET L N PY   
Sbjct: 41  VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98

Query: 470 HGFGATPFNATSFNAYVLQGSAPALP 547
                 PF+   +  +V    + A+P
Sbjct: 99  QVQNNKPFDGKDWTRWVDARQSRAVP 124



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>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8|
          Length = 1089

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 245 GVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVVIDQALAYVDSLKL 394
           G+  +N  D +T+PAS E  +G+  L  HF   S ++I + L    S  L
Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465



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>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1081

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 262
           PLI   RPL+G+G  A +A DS ++ +   N
Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582



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>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 179 HALRPLLGSGKHA-GVACDSWVLGVEAHNVRDWRTVPASCEGYVGHYMLGSHFRRDSXVV 355
           H L  LL S  +  G++  +W++G  A N  DW +V     G    + L       S + 
Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266

Query: 356 IDQALAYVDSLKLAGNGKE 412
           ID+ +AY   L  A   KE
Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,364,654
Number of Sequences: 219361
Number of extensions: 782667
Number of successful extensions: 2682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2669
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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