>U315_ARATH (Q8LFJ5) UPF0315 protein At1g22270|
          Length = 124

 Score =  110 bits (276), Expect = 2e-24
 Identities = 52/125 (41%), Positives = 76/125 (60%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVSTGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSAA 363
           MRL+THN L+ ++KGV++G+PL +E      KEV+ N DF+R +  KI+W+AL     + 
Sbjct: 1   MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 364 GXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPILKG 543
           G                       +   +++LHHALLE+H+EEG LVCP++GR FP+ KG
Sbjct: 61  GYAELPEESPDAAVLKS-------DEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKG 113

Query: 544 VPNML 558
           +PNML
Sbjct: 114 IPNML 118

>U316_ARATH (Q9C9R3) UPF0315 protein At1g78190|
          Length = 124

 Score =  106 bits (265), Expect = 4e-23
 Identities = 51/125 (40%), Positives = 75/125 (60%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVSTGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSAA 363
           MRL+ HN L+ ++KGV   +PL +E  K ++KEV+ N DFLR +  KIDW+AL     + 
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 364 GXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPILKG 543
                                 + + + +R+ HHALLE+H+EEG+LVCP++GR F + KG
Sbjct: 61  EYTELPDNAPDTT-------TLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKG 113

Query: 544 VPNML 558
           +PNML
Sbjct: 114 IPNML 118

>U315_MOUSE (Q9DCG9) UPF0315 protein|
          Length = 125

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVST-GYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSA 360
           M+LLTHN L+S V+GV T G+PL L+  +  I  VE N +F+  ++PK++W AL  A   
Sbjct: 1   MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query: 361 AGXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPILK 540
                                  + + + +R++HH LLE+ V EGTL CP+SGR FPI +
Sbjct: 61  LNLAEVPKEPTEGY---------EHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISR 111

Query: 541 GVPNML 558
           G+PNML
Sbjct: 112 GIPNML 117

>U315_HUMAN (Q9UI30) UPF0315 protein AD-001|
          Length = 125

 Score = 92.4 bits (228), Expect = 8e-19
 Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGV-STGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSA 360
           M+LLTHN L+S V+GV S G+PL L+  +  I  VE N +F+  ++PK++W A   A   
Sbjct: 1   MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAAD- 59

Query: 361 AGXXXXXXXXXXXXXXXXXXGAADVEG-----SAIRRLHHALLEIHVEEGTLVCPDSGRS 525
                                   VEG       +R +HH LLE+ V EGTL CP+SGR 
Sbjct: 60  -------------NLRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRM 106

Query: 526 FPILKGVPNML 558
           FPI +G+PNML
Sbjct: 107 FPISRGIPNML 117

>U315_DROME (Q9VP65) UPF0315 protein CG12975|
          Length = 124

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 52/127 (40%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
 Frame = +1

Query: 184 MRLLTHNFLAS-SVKGVSTGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSA 360
           M+L T+NFL S ++KGV  G+PL L + K  + E E N  F+  ILPK+DW A++ A   
Sbjct: 1   MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQV 60

Query: 361 AGXXXXXXXXXXXXXXXXXXGAADVEGS-AIRRLHHALLEIHVEEGTLVCPDSGRSFPIL 537
           A                       VE    +++LHH L EI V EG L CP++GR FPI 
Sbjct: 61  AELTEDIPAVQPENI---------VENELLLQKLHHLLFEIDVLEGQLECPETGRVFPIS 111

Query: 538 KGVPNML 558
            G+PNML
Sbjct: 112 DGIPNML 118

>YA42_SCHPO (Q09723) Hypothetical UPF0315 protein C31A2.02 in chromosome I|
          Length = 126

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVSTG---YPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAAT 354
           M+LLT NFL  S K  ++    +PL +  AK +I+++EL  +FL GI+P+IDW AL   T
Sbjct: 1   MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60

Query: 355 SAAGXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPI 534
              G                     D +   ++ LH+ LLE  + EG +VC + G  +PI
Sbjct: 61  RQLGNYSLPDEKPDLVD--------DSDEVLLKSLHNVLLETEITEGKMVCGNCGHVYPI 112

Query: 535 LKGVPNML 558
            +G+PNML
Sbjct: 113 FEGIPNML 120

>U315_CAEEL (O45241) Hypothetical UPF0315 protein C04H5.1|
          Length = 125

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = +1

Query: 184 MRLLTHNFLASS-VKGVSTGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAATSA 360
           M+L  HNF++S  +K V+ GYPL L V +   K++E + D    +L +I + AL  A +A
Sbjct: 1   MKLFVHNFMSSRFLKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAA 60

Query: 361 AGXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPILK 540
                                  ++    +R  HH L+ I V +G L+CP++   FPI  
Sbjct: 61  VNQSDRIPREKPEKWD-------ELTDEQLRVFHHLLMNIDVIDGELICPETKTVFPIRD 113

Query: 541 GVPNML 558
           G+PNML
Sbjct: 114 GIPNML 119

>U315_NEUCR (Q8X0S4) Hypothetical UPF0315 protein 18F11.160|
          Length = 127

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVSTG---YPLALEVAKTSIKEVELNVDFLRGILPKIDWRALFAAT 354
           M+++T NFL  +VK   +    +PL  + A+ +  ++E+N   L  +LP+IDW AL   +
Sbjct: 1   MKVMTLNFLTCAVKNCKSSNDSFPLHPKEAELAKDDIEINPQLLINVLPRIDWAALRTTS 60

Query: 355 SAAGXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPI 534
           +  G                       + + ++ LH  L+E  + EG LVC   G  + +
Sbjct: 61  TELGFPTLPEQPPSPEDLQS-------DEALLKELHELLMETQMMEGKLVCGHCGHEYAV 113

Query: 535 LKGVPNML 558
             GV N L
Sbjct: 114 KNGVANFL 121

>YN8Q_YEAST (P53738) UPF0315 protein YNR046w|
          Length = 135

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
 Frame = +1

Query: 184 MRLLTHNFLASSVKGVSTG---YPLALEVAKTSI---KEVELNVDFLRGILPKIDWRALF 345
           M+ LT NFL  SVK   T    +PL  + +K  +   + +E N +FL  I+ ++DW A+ 
Sbjct: 1   MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60

Query: 346 AATSAAGXXXXXXXXXXXXXXXXXXGAADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRS 525
             T AA                      D + + +  LH  LL+  + EG + C + G  
Sbjct: 61  --TVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHI 118

Query: 526 FPILKGVPNML 558
           + I  G+PN+L
Sbjct: 119 YYIKNGIPNLL 129

>RL6_DEIRA (Q9RSL3) 50S ribosomal protein L6|
          Length = 185

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +1

Query: 133 GDNQTTARARANSRWGEMRLLTHNFLASSVKGVSTGYPLALEV------AKTSIKEVELN 294
           GD     R     +   +  LT   +A++VKGVS GY + LE+      AK + K +E+N
Sbjct: 47  GDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMN 106

Query: 295 VDFLRGIL 318
           + +   ++
Sbjct: 107 IGYSHPVI 114

>FOXO1_MOUSE (Q9R1E0) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)|
          Length = 652

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 4   EVEATSPEGPKPSPATPLSFLLPIHHSAARVFRFYCAAAAAVGGDNQTTARARANSRWGE 183
           E     P  P+P P  PLS   P+  SAA       AAA  + G  + T+ +R N+ WG 
Sbjct: 108 EAGCVHPAPPQPPPTGPLSQPPPVPPSAA-------AAAGPLAGQPRKTSSSRRNA-WGN 159

Query: 184 M 186
           +
Sbjct: 160 L 160

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +3

Query: 150 CESSSELEVGGDEAPHAQLPGVEREGREHGLPARAGGRQDVHQGGGAQRRLPPRDPSQDR 329
           C   ++ E G  +A +A LPG + E    G+P   G   D    G   R  PP  P QD 
Sbjct: 539 CAHGAKGEKG--DAGYAGLPGPQGERGLPGIPGATGAPGDDGLPGAPGRPGPPGPPGQDG 596

Query: 330 LAG 338
           L G
Sbjct: 597 LPG 599

>TCPH_SCHPO (P87153) Probable T-complex protein 1 subunit eta (TCP-1-eta)|
           (CCT-eta)
          Length = 558

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +1

Query: 64  LLPIHHSAARVFRFYCAAAAAVGGDNQTTARARANSRWGEMRLLTHNFLASSVKGVSTGY 243
           LL I H AA+       A  A  GD  T+    A     E R    + ++S +  +  GY
Sbjct: 72  LLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHL--IIRGY 129

Query: 244 PLALEVAKTSIKEVELNVDF-----LRGILPK 324
             A ++A   IKE+ +++D      LR +L K
Sbjct: 130 RKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTK 161

>LRC50_HUMAN (Q8NEP3) Leucine-rich repeat-containing protein 50|
          Length = 725

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 147 HCESSSELEVGGDEAPHAQLPGVEREGREHGLPARAGGRQDVH 275
           H E S     G  E   AQ PGVE    +HG   R G +++++
Sbjct: 2   HPEPSEPATGGAAELDCAQEPGVEESAGDHGSAGRGGCKEEIN 44

>RPIA_MOUSE (P47968) Ribose-5-phosphate isomerase (EC 5.3.1.6)|
           (Phosphoriboisomerase)
          Length = 236

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 345 EERPPVDLGKDPAEEVDVELHLLDGRLGDL 256
           ++ P +DL  D A+EVD EL+L+ G  G L
Sbjct: 76  DQHPEIDLAIDGADEVDAELNLIKGGGGCL 105

>Y3134_SYMTH (Q67JN4) Putative ATP:guanido phosphotransferase STH3134 (EC|
           2.7.3.-)
          Length = 353

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 175 WGEMRLLTHNFLASSVKGVSTGYPLALEVAKTSIKEVELNVDFLRGILPKIDWRAL 342
           +GEMRL   + ++ +   ++T   ++ E A   + +V L V    G++PKID+R L
Sbjct: 261 YGEMRLQIEDRVSRAYGILTTARMISSEEAMRLLSDVRLGVAL--GVVPKIDYRIL 314

>RIMS2_RAT (Q9JIS1) Regulating synaptic membrane exocytosis protein 2|
           (Rab3-interacting molecule 2) (RIM 2)
          Length = 1555

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 198 AQLPGVEREGREHGLPARAGGRQD-VHQGGGAQRRLPPRDPSQDRLAGALRRDQRR 362
           + +P VER GR HGL      RQD +  G G + ++    PS  + + ++ RDQ R
Sbjct: 196 SSVPAVER-GRAHGLT-----RQDSIKNGSGMKHQIASDMPSDRKRSPSVSRDQNR 245

>BETB_PSEAE (Q9HTJ1) Betaine aldehyde dehydrogenase (EC 1.2.1.8) (BADH)|
          Length = 490

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +1

Query: 34  KPSPATPLSFLLPIHHSAARVFRFYCAAAAAVGGDNQTTARARANSRWGEMRLLTHNFLA 213
           KPS  TPL+        A ++   Y  A    G  N  T   R   +W     LT + L 
Sbjct: 176 KPSEVTPLT--------ALKLAEIYTEAGVPDGVFNVLTGSGREVGQW-----LTEHPLI 222

Query: 214 SSVK---GVSTGYPLALEVAKTSIKEVELNV 297
             +    G STG  +    + +S+KEV + +
Sbjct: 223 EKISFTGGTSTGKKVMASASSSSLKEVTMEL 253

>VG_DROME (Q26366) Protein vestigial|
          Length = 453

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = -2

Query: 308 RRKSTLSSTSLMDVLATSSASG*PVLTPFTLDARKLCVRSLISPHLEFARALAVVWLSPP 129
           R    L S+S +++ A+SSASG          +   C   ++ P +    A AV   +  
Sbjct: 32  RFNQDLYSSSGVNLAASSSASG---------SSHSPC-SPILPPSVSANAAAAVAAAAHN 81

Query: 128 TAAAAAQ*NLKTLAAEWWIGRRKESGVAGLGFGP-SGLVAS 9
           +AAAA        ++   IG     G+ GLG GP SGL+ S
Sbjct: 82  SAAAAVAVAANQASSSGGIGGGGLGGLGGLGGGPASGLLGS 122

>ACT_TRIRE (Q99023) Actin|
          Length = 376

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 180 GDEAPHAQLPGVEREGREHGLPARAGGRQDVHQGGGAQRR 299
           GD+AP A  P ++   R HG+     G++D + G  AQ +
Sbjct: 23  GDDAPRAVFPSIDGRSRHHGIMI-GMGQKDSYVGDEAQSK 61

>CHMP3_XENTR (Q5BKM3) Charged multivesicular body protein 3 (Chromatin-modifying|
           protein 3) (Vacuolar protein sorting 24)
          Length = 219

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 354 GRGEERPPVDLGKDPAEEVDVELHLLDGRLGDLQ 253
           G+ +ERPP DL  + + ++  E+ L+D ++ D+Q
Sbjct: 4   GKTQERPPKDLVNEWSLKIRKEMRLIDRQIRDIQ 37

>BUK_DEIRA (Q9RVA9) Probable butyrate kinase (EC 2.7.2.7) (BK) (Branched-chain|
           carboxylic acid kinase)
          Length = 383

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 186 EAPHAQLPGVEREGREHGLPARAGGRQDVHQGG 284
           EA    +PGV RE R H L ARA  R+  ++ G
Sbjct: 146 EAHMTGVPGVRREARFHALNARAVARRAAYEVG 178

>OST3A_MOUSE (Q8BKN6) Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 3A1) (Heparan sulfate
           3-O-sulfotransferase 3A1)
          Length = 393

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +1

Query: 16  TSPEGPKPSPATPLS------FLLPIHHSAARVFRFYCAA 117
           + P G +PSPA PLS      FLL +      ++ FYC A
Sbjct: 4   SGPTGAQPSPAEPLSRSIFRKFLLMLCSLLTSLYVFYCLA 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,778,553
Number of Sequences: 219361
Number of extensions: 1195663
Number of successful extensions: 5302
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5291
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)