Clone Name | bart11g06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 agacccagcccaaacaacc 23 ||||||||||||||||||| Sbjct: 33436 agacccagcccaaacaacc 33418
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agcccaaacaaccctctcc 29 ||||||||||||||||||| Sbjct: 27502214 agcccaaacaaccctctcc 27502232
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agcccaaacaaccctctcc 29 ||||||||||||||||||| Sbjct: 66185 agcccaaacaaccctctcc 66203
>dbj|AP004442.1| Cottus reinii mitochondrial DNA, complete genome Length = 16561 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ctagacccagcccaaacaa 21 ||||||||||||||||||| Sbjct: 4080 ctagacccagcccaaacaa 4062
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 gcccaaacaaccctctcc 29 |||||||||||||||||| Sbjct: 320814 gcccaaacaaccctctcc 320797
>ref|XM_568542.1| Cryptococcus neoformans var. neoformans JEC21 vacuolar membrane protein (CNN01020) partial mRNA Length = 3219 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 12 gcccaaacaaccctctcc 29 |||||||||||||||||| Sbjct: 3187 gcccaaacaaccctctcc 3170
>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence Length = 232320 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 acccagcccaaacaaccc 24 |||||||||||||||||| Sbjct: 11280 acccagcccaaacaaccc 11297
>gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosome 18, complete sequence Length = 184836 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 acccagcccaaacaaccc 24 |||||||||||||||||| Sbjct: 138172 acccagcccaaacaaccc 138189
>emb|AL627343.16| Mouse DNA sequence from clone RP23-382J14 on chromosome 11, complete sequence Length = 121496 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 ctagacccagcccaaaca 20 |||||||||||||||||| Sbjct: 1274 ctagacccagcccaaaca 1257
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 ctagacccagcccaaaca 20 |||||||||||||||||| Sbjct: 212657 ctagacccagcccaaaca 212640
>gb|AC024032.5| Homo sapiens BAC clone RP11-196J14 from 4, complete sequence Length = 177038 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 acccagcccaaacaaccc 24 |||||||||||||||||| Sbjct: 52159 acccagcccaaacaaccc 52176
>dbj|AK155414.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630225M09 product:unclassifiable, full insert sequence Length = 764 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 acccagcccaaacaaccc 24 |||||||||||||||||| Sbjct: 442 acccagcccaaacaaccc 459
>ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508 (LOC498559), mRNA Length = 1111 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 tccgcttccggcccgagg 44 |||||||||||||||||| Sbjct: 79 tccgcttccggcccgagg 62
>emb|AJ332912.1|HSA332912 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KD10C Length = 626 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 aaacaaccctctccgctt 33 |||||||||||||||||| Sbjct: 56 aaacaaccctctccgctt 39
>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166894 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 aaacaaccctctccgctt 33 |||||||||||||||||| Sbjct: 155261 aaacaaccctctccgctt 155278
>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200540 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 aaacaaccctctccgctt 33 |||||||||||||||||| Sbjct: 12284 aaacaaccctctccgctt 12301 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 236,894 Number of Sequences: 3902068 Number of extensions: 236894 Number of successful extensions: 67918 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67873 Number of HSP's gapped (non-prelim): 45 length of query: 46 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 26 effective length of database: 17,155,003,908 effective search space: 446030101608 effective search space used: 446030101608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)