ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11g04 |
|---|---|
| Clone Library Name | barley_pub |
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 85.5 bits (210), Expect = 1e-16 Identities = 51/159 (32%), Positives = 74/159 (46%) Frame = +3 Query: 93 NTLSNLGHSAAIHGFLGCLSADIPSGLIQTPATPSYSALLLSTARNLRYILPDSSKPVGI 272 N LS+ +S +H F + T Y LL ++ +N + P SKP I Sbjct: 29 NLLSSCLNSHGVHNFT----------TLSTDTNSDYFKLLHASMQNPLFAKPTVSKPSFI 78 Query: 273 IAAAEHAHVQTTXXXXXXXXXXXXXXXXXHDYEGLSYASVHLHNEPFAVLDLAALRAIHV 452 + + +T H YEGLSY + + PF ++D+ L I + Sbjct: 79 VMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTA----DTPFVIVDMMNLNRISI 134 Query: 453 DPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTM 569 D AW ESGAT+GELYYA+ ++ +LGF AG CPT+ Sbjct: 135 DVLSETAWVESGATLGELYYAIAQSTDTLGFTAGWCPTV 173
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 75.9 bits (185), Expect = 9e-14 Identities = 41/105 (39%), Positives = 52/105 (49%) Frame = +3 Query: 255 SKPVGIIAAAEHAHVQTTXXXXXXXXXXXXXXXXXHDYEGLSYASVHLHNEPFAVLDLAA 434 SKP II + T H YEGLSY S + PF ++DL Sbjct: 69 SKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS----DTPFILIDLMN 124 Query: 435 LRAIHVDPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTM 569 L + +D AW ESG+T+GELYYA+ +S LGF AG CPT+ Sbjct: 125 LNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTV 169
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 37.0 bits (84), Expect = 0.045 Identities = 25/67 (37%), Positives = 28/67 (41%) Frame = +2 Query: 53 PCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRPEP 232 P P P PL GP +A P P LP G P P P P P PP P P Sbjct: 543 PAPPPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAP 602 Query: 233 PLHPAGL 253 PL +G+ Sbjct: 603 PLPASGI 609
>LSM4_HUMAN (Q9Y4Z0) U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich| protein) (GRP) Length = 139 Score = 33.5 bits (75), Expect = 0.50 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQ 166 GG+GR GGR R G+PG+G GQ Sbjct: 105 GGAGRGVFGGRGRGGIPGTGRGQ 127
>LSM4_MOUSE (Q9QXA5) U6 snRNA-associated Sm-like protein LSm4| Length = 137 Score = 33.5 bits (75), Expect = 0.50 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQ 166 GG+GR GGR R G+PG+G GQ Sbjct: 103 GGAGRGVFGGRGRGGIPGAGRGQ 125
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 32.7 bits (73), Expect = 0.85 Identities = 28/72 (38%), Positives = 31/72 (43%), Gaps = 11/72 (15%) Frame = -1 Query: 237 SGGSGRWTAGGRSRTGLPGS-G*GQTGCPRRGSQ--------GIHGLQRNDLN*RAC--F 91 SGG G AG R R G G G G C R G + G +R L R Sbjct: 1585 SGGGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRCWLCWWRRGPRPRRRPGLTDRVPPRG 1644 Query: 90 GPRPRGCRGLGQ 55 GP PRGCRG G+ Sbjct: 1645 GPSPRGCRGAGR 1656
>1B04_GORGO (P30382) Class I histocompatibility antigen, GOGO-B0201 alpha chain| precursor Length = 363 Score = 32.0 bits (71), Expect = 1.4 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Frame = -3 Query: 298 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 122 TWA S + T GR RF V D VW D S ++PR PWI Sbjct: 22 TWAGSHSMRYFHTAMSRPGRGEPRFITVGYV----DDTQFVWFDSDAASPRKEPRTPWIE 77 Query: 121 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 E P+ +W ++ + T+ V L L Sbjct: 78 QEGPE----YWDRETQISKTNTQTYRVGLGTL 105
>ALL5_APIGR (P81943) Allergen Api g 5 (Fragments)| Length = 86 Score = 31.2 bits (69), Expect = 2.5 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 435 LRAIHVDPARAEAWAESGATVGELYYAV 518 L+A+ DP A ++GAT+GE+YY + Sbjct: 25 LKAVIADPVAKTAVVQAGATLGEVYYXI 52
>SMN_MOUSE (P97801) Survival motor neuron protein| Length = 288 Score = 30.8 bits (68), Expect = 3.2 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = +2 Query: 53 PCPNPLHPLGLGP-KHAL*FRSFRCNPWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRPE 229 P P P+ GLGP K L F P +P P P W P P P ++ PP Sbjct: 190 PPPPPMPGSGLGPGKPGLKFNGPPPPPPLPPPPFL--PCWMPPFPSGPPIIPPP------ 241 Query: 230 PPLHP 244 PP+ P Sbjct: 242 PPISP 246
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQTG--------CPRRGSQGIHGLQRNDLN*RACFGPRP 79 GG G +GG R G P G G G CP + ++ RN+ N C P+P Sbjct: 388 GGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECN--QCKAPKP 445 Query: 78 RGCRG 64 G G Sbjct: 446 DGPGG 450
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQTG--------CPRRGSQGIHGLQRNDLN*RACFGPRP 79 GG G +GG R G P G G G CP + ++ RN+ N C P+P Sbjct: 395 GGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECN--QCKAPKP 452 Query: 78 RGCRG 64 G G Sbjct: 453 DGPGG 457
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQTG--------CPRRGSQGIHGLQRNDLN*RACFGPRP 79 GG G +GG R G P G G G CP + ++ RN+ N C P+P Sbjct: 381 GGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECN--QCKAPKP 438 Query: 78 RGCRG 64 G G Sbjct: 439 DGPGG 443
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Frame = +2 Query: 134 IPWLPLRG----HPVWPHPDPGNPVLLRPPAVHRPEPPL 238 IP LP R P P P PG L PP RP PP+ Sbjct: 315 IPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPPPV 353
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 30.4 bits (67), Expect = 4.2 Identities = 26/61 (42%), Positives = 28/61 (45%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQTGCPRRGSQGIHGLQRNDLN*RACFGPRPRGCRGLGQ 55 GG GR +GGR R G G G R GS G G R RA G R R RG G+ Sbjct: 327 GGRGRGGSGGRGRGGSGGRG-------RGGSGGRRGRGRE----RARGGSRER-ARGRGR 374 Query: 54 G 52 G Sbjct: 375 G 375
>ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 421 Score = 30.4 bits (67), Expect = 4.2 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +2 Query: 146 PLRGHPVWPHPDPGNPVLLRPPAVHRPEPPLHP 244 P+ H W P P+ RPPA P PP P Sbjct: 319 PISAHLPWYFQPPPRPLPPRPPAAQPPPPPSPP 351
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%) Frame = +2 Query: 128 PWIPWLPLRGHPVWPHPDPGNPVLLRPP-------AVHRPEPPLHPAGLL 256 P++P PL P + HP +P L PP H PP PA ++ Sbjct: 332 PFVPAPPLSSAPPFQHPQQHHPQLPPPPVHQGMGRGYHHNSPPQDPAPIV 381
>FA98B_MOUSE (Q80VD1) Protein FAM98B| Length = 429 Score = 30.0 bits (66), Expect = 5.5 Identities = 22/51 (43%), Positives = 23/51 (45%) Frame = -1 Query: 234 GGSGRWTAGGRSRTGLPGSG*GQTGCPRRGSQGIHGLQRNDLN*RACFGPR 82 GG G W GG S G GSG G G R G QG R D R +G R Sbjct: 355 GGGGGWGGGGGSGGGWGGSGGGGGG--RGGFQG-----RGDYGGRGDYGGR 398
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 30.0 bits (66), Expect = 5.5 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Frame = +2 Query: 14 SNHGKDTEDNNVTPCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLRGHP-VWPHPDPGN 190 S G D + V+P P P P P +P PL HP + PHP P Sbjct: 39 SGSGSDGDSVPVSPQPAPPSPPAA--------------PCLP--PLAHHPHLPPHPPPPP 82 Query: 191 PVLLRPPAVHRPEP 232 P L PA H+P+P Sbjct: 83 PQHLAAPA-HQPQP 95
>PHLB2_MOUSE (Q8K1N2) Pleckstrin homology-like domain family B member 2 (Protein| LL5-beta) Length = 1249 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +3 Query: 105 NLGHSAAIHGFLGCLSADIPSGLIQTPATPSYSALLLSTARNLRY--ILPDSSKPVG 269 NLGHSA+ G S ++ L +TP PS SA L Y ILP + + +G Sbjct: 521 NLGHSASFLAPRGSRSDELLGDLTRTP--PSSSAAFLKATNESSYLSILPKTPEDIG 575
>PRP33_DAUCA (P06600) Proline-rich 33 kDa extensin-related protein precursor| (Fragment) Length = 211 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +2 Query: 146 PLRGHPVWPHPDPG-NPVLLRPPAVHRPEPPL--HP 244 P PV H P P+++RPP H+P PP HP Sbjct: 166 PKTEKPVPEHKPPHLPPIVVRPPPTHKPNPPYGHHP 201
>LRFN2_MOUSE (Q80TG9) Leucine-rich repeat and fibronectin type-III| domain-containing protein 2 precursor Length = 788 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 399 HNEPFAVLDLAALRAIHVDPARAEAWAE 482 H +PF+ LDL +LR++H+D R + E Sbjct: 90 HIQPFSFLDLESLRSLHLDSNRLPSLGE 117
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +2 Query: 128 PWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRPEPPLHPAG 250 P +P P R P PG+P L PP + P PL PAG Sbjct: 525 PGVPGPPGRAGP------PGSPCLPGPPGLPCPVSPLGPAG 559
>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 276 Score = 29.6 bits (65), Expect = 7.2 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Frame = +2 Query: 53 PCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLR------------GHPVWPHPDPGNPV 196 P P+P P G P+ RS R P P P + G P P P GNP Sbjct: 184 PPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPPGGNPQ 243 Query: 197 LLRPPAVHRPE-PPLHPAG 250 + P +P+ PP P G Sbjct: 244 QPQAPPAGKPQGPPPPPQG 262
>LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-III| domain-containing protein 2 precursor Length = 789 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 399 HNEPFAVLDLAALRAIHVDPARAEAWAE 482 H +PF+ LDL +LR++H+D R + E Sbjct: 90 HIQPFSFLDLESLRSLHLDSNRLPSLGE 117
>LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-III| domain-containing protein 2 precursor Length = 789 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 399 HNEPFAVLDLAALRAIHVDPARAEAWAE 482 H +PF+ LDL +LR++H+D R + E Sbjct: 90 HIQPFSFLDLESLRSLHLDSNRLPSLGE 117
>PRB4M_HUMAN (P10161) Basic salivary proline-rich protein 4 allele M (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 238 Score = 29.6 bits (65), Expect = 7.2 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Frame = +2 Query: 53 PCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLR------------GHPVWPHPDPGNPV 196 P P+P P G P+ RS R P P P + G P P P GNP Sbjct: 146 PPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPPGGNPQ 205 Query: 197 LLRPPAVHRPE-PPLHPAG 250 + P +P+ PP P G Sbjct: 206 QPQAPPAGKPQGPPPPPQG 224
>1C14_HUMAN (P30510) HLA class I histocompatibility antigen, Cw-14 alpha chain| precursor (MHC class I antigen Cw*14) Length = 366 Score = 29.6 bits (65), Expect = 7.2 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Frame = -3 Query: 298 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 122 TWACS + T GR RF AV D V D S +PR PW+ Sbjct: 22 TWACSHSMRYFSTSVSRPGRGEPRFIAVGYV----DDTQFVRFDSDAASPRGEPRAPWVE 77 Query: 121 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 E P+ +W + + + + + V LR L Sbjct: 78 QEGPE----YWDRETQKYKRQAQTDRVSLRNL 105
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +2 Query: 158 HPVWP--HPDPGNPVLLRPPAVHRPEPPLHP 244 HP P HP P V + P VH P P +HP Sbjct: 369 HPPAPGVHPPPSAGVHPQAPGVHPPAPAVHP 399
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = +2 Query: 128 PWIPWLPLRGHPVWPHPDPGNPVLLRPP----AVHRPEPPLHPAG 250 P P P G P P P PG P LRPP A+ P P L P G Sbjct: 385 PMRPPGPPSGPP--PGPPPGAPPFLRPPGLPSALRGPMPRLLPPG 427
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 29.3 bits (64), Expect = 9.4 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Frame = +2 Query: 53 PCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLR------------GHPVWPHPDPGNPV 196 P P+P P G P+ RS R P P P + G P P P GNP Sbjct: 155 PPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQ 214 Query: 197 LLRPPAVHRPE-PPLHPAG 250 + P +P+ PP P G Sbjct: 215 QPQDPPAGKPQGPPPPPQG 233
>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30; Core protein p10] Length = 580 Score = 29.3 bits (64), Expect = 9.4 Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 7/74 (9%) Frame = +2 Query: 50 TPCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRP- 226 TP P PL P P L +PV P PDP P +L PP P Sbjct: 182 TPLPQPLSPQPSAP-----------------LTSSLYPVVPKPDPPKPPVL-PPDPSSPL 223 Query: 227 ------EPPLHPAG 250 EPP +P G Sbjct: 224 IDLLTEEPPPYPGG 237
>1C12_HUMAN (P30508) HLA class I histocompatibility antigen, Cw-12 alpha chain| precursor (MHC class I antigen Cw*12) Length = 366 Score = 29.3 bits (64), Expect = 9.4 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Frame = -3 Query: 298 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 122 TWACS + T GR RF AV D V D S +PR PW+ Sbjct: 22 TWACSHSMRYFYTAVSRPGRGEPRFIAVGYV----DDTQFVRFDSDAASPRGEPRAPWVE 77 Query: 121 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 E P+ +W + + + + + V LR L Sbjct: 78 QEGPE----YWDRETQKYKRQAQADRVSLRNL 105
>1C08_HUMAN (P30505) HLA class I histocompatibility antigen, Cw-8 alpha chain| precursor (MHC class I antigen Cw*8) Length = 366 Score = 29.3 bits (64), Expect = 9.4 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Frame = -3 Query: 298 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 122 TWACS + T GR RF AV D V D S +PR PW+ Sbjct: 22 TWACSHSMRYFYTAVSRPGRGEPRFIAVGYV----DDTQFVQFDSDAASPRGEPRAPWVE 77 Query: 121 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 E P+ +W + + + + + V LR L Sbjct: 78 QEGPE----YWDRETQKYKRQAQTDRVSLRNL 105
>1C05_HUMAN (Q9TNN7) HLA class I histocompatibility antigen, Cw-5 alpha chain| precursor (MHC class I antigen Cw*5) Length = 366 Score = 29.3 bits (64), Expect = 9.4 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Frame = -3 Query: 298 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 122 TWACS + T GR RF AV D V D S +PR PW+ Sbjct: 22 TWACSHSMRYFYTAVSRPGRGEPRFIAVGYV----DDTQFVQFDSDAASPRGEPRAPWVE 77 Query: 121 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 E P+ +W + + + + + V LR L Sbjct: 78 QEGPE----YWDRETQKYKRQAQTDRVNLRKL 105
>HLAG_PANTR (Q95IT1) HLA class I histocompatibility antigen, alpha chain G| precursor (HLA G antigen) Length = 338 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/57 (26%), Positives = 24/57 (42%) Frame = -3 Query: 196 DGVAGVWMRPDGMSAERQPRNPWIAAE*PKLESVFWPETERM*RVRTRCNIVVLRVL 26 D VW D +PR PW+ E P+ +W E R + + + + L+ L Sbjct: 53 DDTQFVWFDSDSACPRMEPRAPWVEQEGPE----YWEEETRNTKAHAQTDRINLQTL 105
>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 371 Score = 29.3 bits (64), Expect = 9.4 Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 7/74 (9%) Frame = +2 Query: 50 TPCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRP- 226 TP P PL P P L +PV P PDP P +L PP P Sbjct: 182 TPLPQPLSPQPSAP-----------------LTSSLYPVVPKPDPPKPPVL-PPDPSSPL 223 Query: 227 ------EPPLHPAG 250 EPP +P G Sbjct: 224 IDLLTEEPPPYPGG 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,199,581 Number of Sequences: 219361 Number of extensions: 1265952 Number of successful extensions: 5393 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4525 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5280 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
