ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart11f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, com... 38 6.3
2ref|XM_380563.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 38 6.3
3gb|AC122338.2| Mus musculus BAC clone RP23-353I2 from chromosome... 38 6.3
4gb|AC131983.11| Mus musculus chromosome 7, clone RP24-173C11, co... 38 6.3
5emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 38 6.3
6gb|AC168089.5| Mus musculus BAC clone RP23-299A14 from chromosom... 38 6.3
7gb|U07975.1|HSU07975 Human T cell receptor beta (TCRBV7S2, TCRBV... 38 6.3

>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence
          Length = 197827

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     ccaaaataagtcctgttta 107
              |||||||||||||||||||
Sbjct: 196129 ccaaaataagtcctgttta 196147



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>ref|XM_380563.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
          (FG00387.1) partial mRNA
          Length = 1662

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 14 cccttccaggaccagaagc 32
          |||||||||||||||||||
Sbjct: 28 cccttccaggaccagaagc 46



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>gb|AC122338.2| Mus musculus BAC clone RP23-353I2 from chromosome 6, complete sequence
          Length = 181128

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     aagccaaaataagtcctgt 104
              |||||||||||||||||||
Sbjct: 160950 aagccaaaataagtcctgt 160968



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>gb|AC131983.11| Mus musculus chromosome 7, clone RP24-173C11, complete sequence
          Length = 158500

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     ccaaaataagtcctgttta 107
              |||||||||||||||||||
Sbjct: 141035 ccaaaataagtcctgttta 141017



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 22      ggaccagaagcgagccctt 40
               |||||||||||||||||||
Sbjct: 2149243 ggaccagaagcgagccctt 2149261



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>gb|AC168089.5| Mus musculus BAC clone RP23-299A14 from chromosome 6, complete sequence
          Length = 179444

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     aagccaaaataagtcctgt 104
              |||||||||||||||||||
Sbjct: 155320 aagccaaaataagtcctgt 155302



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>gb|U07975.1|HSU07975 Human T cell receptor beta (TCRBV7S2, TCRBV13S2-2, TCRBV6S7-2) genes,
             TCRBV deleted 1 haplotype, partial cds
          Length = 11952

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   atctggtctgtcgcagaag 131
             |||||||||||||||||||
Sbjct: 11668 atctggtctgtcgcagaag 11686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 811,918
Number of Sequences: 3902068
Number of extensions: 811918
Number of successful extensions: 53598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53564
Number of HSP's gapped (non-prelim): 34
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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