ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11e07 |
|---|---|
| Clone Library Name | barley_pub |
>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 199 Score = 89.0 bits (219), Expect = 1e-17 Identities = 45/92 (48%), Positives = 60/92 (65%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K +KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ SK+SK Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-RSKNSK-V 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDE 386 +VS+TVEGPPPP+E Sbjct: 59 PEREEKRVLGFVLLRGENIVSLTVEGPPPPEE 90
>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 231 Score = 87.4 bits (215), Expect = 3e-17 Identities = 52/147 (35%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and| B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB') Length = 240 Score = 87.4 bits (215), Expect = 3e-17 Identities = 52/147 (35%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 87.4 bits (215), Expect = 3e-17 Identities = 52/147 (35%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 87.4 bits (215), Expect = 3e-17 Identities = 52/147 (35%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGA 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 85.5 bits (210), Expect = 1e-16 Identities = 51/147 (34%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 85.5 bits (210), Expect = 1e-16 Identities = 51/147 (34%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 85.5 bits (210), Expect = 1e-16 Identities = 51/147 (34%), Positives = 66/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P + + Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'| (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') Length = 240 Score = 84.0 bits (206), Expect = 3e-16 Identities = 51/147 (34%), Positives = 65/147 (44%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K SKMLQ ++ RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P S + Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 470 +VSMTVEGPPP D Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPAGV 118 Query: 471 PLLQAQPGLSXXXXXXXXXXXXMMQPQ 551 P+ QA GL+ +M PQ Sbjct: 119 PMPQAPAGLAGPIRGVGGPSQQVMTPQ 145
>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated| protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 160 Score = 78.6 bits (192), Expect = 1e-14 Identities = 37/92 (40%), Positives = 54/92 (58%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 290 M+ K +KM+ +NYRM++ +QDGR +G F AFD+HMN++L +CEE R++ P K Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK-- 58 Query: 291 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDE 386 +VSMTV+GPPP D+ Sbjct: 59 TDGEEKRILGLVLVRGEHIVSMTVDGPPPRDD 90
>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment) Length = 214 Score = 65.9 bits (159), Expect = 9e-11 Identities = 40/128 (31%), Positives = 53/128 (41%) Frame = +3 Query: 168 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXXXXXXXXXXXXXXV 347 ++Q+GR +G F AFD+HMNL+L DC+EFRK+ P S + + Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AEREEKRVLGLVLLRGENL 60 Query: 348 VSMTVEGPPPPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLQAQPGLSXXXXXXXXX 527 VSMTVEGPPP D P+ QA GL+ Sbjct: 61 VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 120 Query: 528 XXXMMQPQ 551 +M PQ Sbjct: 121 SQQVMTPQ 128
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I| Length = 147 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/85 (35%), Positives = 47/85 (55%) Frame = +3 Query: 129 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXX 308 +KM+ +N+ + VT +DGR VG+ +AFD MNLVL DC+E+R + ++ Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-KKQNVPSNSVYEEK 62 Query: 309 XXXXXXXXXXXXVVSMTVEGPPPPD 383 +VS++V+GPPP D Sbjct: 63 RMLGLVILRGEFIVSLSVQGPPPMD 87
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B| (snRNP-B) (Sm protein B) (Sm-B) (SmB) Length = 196 Score = 57.0 bits (136), Expect = 4e-08 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 7/59 (11%) Frame = +3 Query: 129 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPPSKSSK 284 S++ ++Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P K SK Sbjct: 10 SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68
>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein| Length = 77 Score = 36.6 bits (83), Expect = 0.056 Identities = 14/39 (35%), Positives = 26/39 (66%) Frame = +3 Query: 135 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 ML +V+ + V ++ G ++ G +D+H+N++LGD EE Sbjct: 13 MLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 36.6 bits (83), Expect = 0.056 Identities = 14/32 (43%), Positives = 25/32 (78%) Frame = +3 Query: 156 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 R+ V +++ R+L G+ A+D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3| Length = 101 Score = 36.6 bits (83), Expect = 0.056 Identities = 14/32 (43%), Positives = 25/32 (78%) Frame = +3 Query: 156 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 R+ V +++ R+L G+ A+D+H+N++LGD EE Sbjct: 27 RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58
>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2| Length = 939 Score = 36.6 bits (83), Expect = 0.056 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = +2 Query: 149 QLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKI--FQD---HRRARG 304 +LP R+ P RP PTR V+ P P P R G P PA QD +R+ +G Sbjct: 240 ELPIQREEPSRPRRKPTRPPVNRSPRPSTPSPNRSAGGPPKPAAPATPAQDDSRNRKKKG 299 Query: 305 AEDARPA 325 D +PA Sbjct: 300 RRDEKPA 306
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)| Length = 172 Score = 35.0 bits (79), Expect = 0.16 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +3 Query: 147 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 V+ ++ V ++DGR L G FD++ NL+L DC E Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE 84
>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3| Length = 93 Score = 35.0 bits (79), Expect = 0.16 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 165 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 V ++ R+L G+ A+D H+N+VLGD EE Sbjct: 24 VKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 34.7 bits (78), Expect = 0.21 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = +2 Query: 131 ENAPVRQLPDARDHPGRPP----TRGEVHGLRSP-HEPRPRRLRGVPQAPALKIFQDHRR 295 +N P+ QLP+ + P PP T E G+R P P PRR P P + + Sbjct: 309 QNRPLPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLN 368 Query: 296 ARGAEDARPAPSPWRGGRLHDRRGPAP 376 + G P + RRGPAP Sbjct: 369 SAGGNSLLPQAT--------GRRGPAP 387
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 34.7 bits (78), Expect = 0.21 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Frame = +2 Query: 146 RQLPDARDHPGR-----PPTRGEVHGL-RSPHEPRPRRLRGVPQAPALKIFQDHRRARGA 307 R L +D GR PP RG R+P R R R ++ + + + R R Sbjct: 736 RSLTPRKDTRGRSLSRTPPRRGRGRSYSRTPSRSRSRS-RSYSRSVSKSVSRSPPRRRAV 794 Query: 308 EDARPAPSPWRGGRLHDRRGPAPAR 382 E P+P P GR +DR +P+R Sbjct: 795 ESRSPSPPPRGRGRSYDRYSRSPSR 819 Score = 32.3 bits (72), Expect = 1.1 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 4/86 (4%) Frame = +2 Query: 137 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 316 APV A G+ G RSPH P +RL RR + Sbjct: 865 APVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRL---------------RRGSYSRSR 909 Query: 317 RPAPSPWRG----GRLHDRRGPAPAR 382 +P P RG GR R GPAPAR Sbjct: 910 SRSPIPIRGNGPAGRDTGRAGPAPAR 935
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.48 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +2 Query: 113 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 292 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 293 RARGAEDARPAPSPWRGGRLHDRRG 367 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 33.5 bits (75), Expect = 0.48 Identities = 29/85 (34%), Positives = 32/85 (37%) Frame = +2 Query: 113 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 292 VEP+G+ P Q P PG H LR P PR L P+ P L Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392 Query: 293 RARGAEDARPAPSPWRGGRLHDRRG 367 D R P RGGR D RG Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409
>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 33.1 bits (74), Expect = 0.62 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 129 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 S + ++N + V DGR +VG FD+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8| Length = 95 Score = 33.1 bits (74), Expect = 0.62 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 129 SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 S + ++N + V DGR +VG FD+ +NL+L + E Sbjct: 2 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42
>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 118 Score = 33.1 bits (74), Expect = 0.62 Identities = 12/34 (35%), Positives = 25/34 (73%) Frame = +3 Query: 150 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 N+++ + ++ ++L+G+ AFDRH N+VL + +E Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 33.1 bits (74), Expect = 0.62 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Frame = +2 Query: 146 RQLPDARDHPGR---PPTRGEVHGLRSPHEPRPRRLRGVP---QAPALKIFQDHRRARGA 307 R LP +RD P + P G H RSP RPR+ P ++P L +D + Sbjct: 630 RDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDND 689 Query: 308 EDAR---PAPSPWRGGRLHDRRG 367 +R PSP + DRRG Sbjct: 690 RSSRLLLERPSP-----IRDRRG 707
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/77 (29%), Positives = 31/77 (40%) Frame = +2 Query: 146 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 325 R+ D P PP R RSP P RR ++P+ HRR + P+ Sbjct: 753 RRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSPP---PHRRRYSDDSRSPS 809 Query: 326 PSPWRGGRLHDRRGPAP 376 P P R + R P+P Sbjct: 810 PPPRRRRYSDNSRSPSP 826
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 33.1 bits (74), Expect = 0.62 Identities = 24/79 (30%), Positives = 31/79 (39%) Frame = +2 Query: 113 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 292 VEP+G+ P + P H R P ++ G P PR L G P+ P + Sbjct: 360 VEPRGYMGPPHQGPPMHHGHDNRGPASHDMRG--GPLAADPRMLIGEPRGPMI------- 410 Query: 293 RARGAEDARPAPSPWRGGR 349 D R P RGGR Sbjct: 411 ------DQRGLPMDGRGGR 423
>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 32.7 bits (73), Expect = 0.81 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +3 Query: 150 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 284 N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein| D2) (Sm-D2) Length = 118 Score = 32.7 bits (73), Expect = 0.81 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +3 Query: 150 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 284 N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P S K Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 807 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = +2 Query: 191 RGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPS 331 RG R P PRPRRLR PQ P HR A+ A P+ Sbjct: 297 RGGRRTARRPPRPRPRRLRAAPQGPG----AGHRLAQRGRPAFALPA 339
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Frame = +2 Query: 161 ARDHPGRPP-TRGEVHGLRSPHEPRPRRL-----RGVPQAPALKIFQDHRRARGAEDARP 322 A PG P T G G+ P PRP G P P + G +D P Sbjct: 210 AGPRPGNNPFTSGGSTGMARPQAPRPGGAPRPGGAGAPGGP-------RPQGAGGQDRAP 262 Query: 323 APSPWRGGRLHDRRGPAPAR*VPG 394 P GG + GP AR PG Sbjct: 263 RPQGGPGGAPRPQGGPGGARPTPG 286
>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core| protein D2) (Sm-D2) Length = 119 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = +3 Query: 150 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 284 N ++ + ++ ++L+G+ AFDRH N+VL + +E + +LP + K Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83
>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)| Length = 89 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 156 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 R+ + ++ R LVG AFD H N+VL D E Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 MS ++ +F++ ++ + + GR + G FD MNLV+ +C E Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)| (Sm-G) (SmG) Length = 76 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 MS ++ +F++ ++ + + GR + G FD MNLV+ +C E Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8| Length = 94 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 135 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 + F+ R++V DGR ++G FD NL+L D E Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +3 Query: 147 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 275 + R+ + ++ +++VG + FD +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5| Length = 90 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +3 Query: 147 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 275 + R+ + ++ +++VG + FD +N+VL D EF P + Sbjct: 21 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Frame = +2 Query: 164 RDHPGRPPTRGEVHGLRSPHEPRPRRLRG----VPQAPALKIFQDHRRARGAEDARPAPS 331 R HP RP +PH R RR G P AP + +D A AR Sbjct: 1230 RSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPARRLTG 1289 Query: 332 PWRGGRLHDRRGPAPA 379 P R H RR P A Sbjct: 1290 PSR----HARRCPHAA 1301
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 19/112 (16%) Frame = +2 Query: 119 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRR------------------- 241 P+GF P PG P +GE GL P PR + Sbjct: 274 PRGFPGTP-----GVAGQPGLPGMKGE-KGLSGPAGPRGKEGRPGLPGPPGFKGDRGLDG 327 Query: 242 LRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQ 397 L GVP P K GA+ AR P P GG D GP +PG+ Sbjct: 328 LPGVPGLPGQKGEAGFPGRDGAKGARGPPGPPGGGEFSD--GPPGPPGLPGR 377
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = +2 Query: 173 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 352 PG P P RP+ PQ P + R + + RPAP+P G + Sbjct: 265 PGSTPLNPAASQPPPPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKRPAPTP--GTQA 322 Query: 353 HDRRGP 370 H ++GP Sbjct: 323 HQQKGP 328
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 32.0 bits (71), Expect = 1.4 Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 10/102 (9%) Frame = +2 Query: 125 GFENAPVRQLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 295 G E AP + A G P P GE P P G APA Sbjct: 26 GGEPAPAEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAP 85 Query: 296 ARG-------AEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 400 A G AE PAP+P GG G APA P +G Sbjct: 86 AEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAP-APAEG 126
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 32.0 bits (71), Expect = 1.4 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +2 Query: 122 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 268 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 269 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGL 403 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 32.0 bits (71), Expect = 1.4 Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Frame = +2 Query: 122 QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 268 Q F P +P PG P P RG P +P R +RG P P Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699 Query: 269 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGL 403 + R RG + P P P+RG R GP R PG G+ Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGM 745
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Frame = +2 Query: 182 PPTRGEVHGLRSPHEP-RPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGR-LH 355 PP RG P +P R +RG P P + R RG + P P P+RG R Sbjct: 674 PPPRGGDPFWDGPGDPMRGGPMRGGP-GPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 732 Query: 356 DRRGPAPAR*VPGQGL 403 GP R PG G+ Sbjct: 733 SGGGPPNGRGGPGGGM 748
>RUXX_METTH (O26745) Putative snRNP Sm-like protein| Length = 81 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 147 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 +N + + ++ R+ G +FD HMNLVL D EE Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protein 31)| Length = 88 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 132 KMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 K+ F+ + V++ + R LVG +A D MNL+L EE Sbjct: 5 KLSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEE 44
>CDAN1_HUMAN (Q8IWY9) Codanin-1| Length = 1226 Score = 31.2 bits (69), Expect = 2.4 Identities = 27/77 (35%), Positives = 31/77 (40%) Frame = +2 Query: 173 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 352 P PPT + G + RP G P+ Q A AP RGGR Sbjct: 66 PQGPPTPAKTPGASAALPGRPG---GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR- 121 Query: 353 HDRRGPAPAR*VPGQGL 403 RRGP PAR G+GL Sbjct: 122 --RRGPGPARERGGRGL 136
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = +2 Query: 119 PQGFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 295 P+G P + D PGRP RG P P+ RG+P L + HR Sbjct: 208 PRGPAGPPGKNGDDGEAGKPGRPGQRGP---------PGPQGARGLPGTAGLPGMKGHRG 258 Query: 296 ARGAEDARPAPSP 334 G + A+ P P Sbjct: 259 FSGLDGAKGQPGP 271
>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein| Length = 72 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 165 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRK 260 V ++ R+ G+ +D HMNLVL + EE R+ Sbjct: 19 VRLKGAREFRGELKGYDIHMNLVLDNAEELRE 50
>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)| Length = 1386 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = +2 Query: 119 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRP 235 P G AP L D+ HP R P+ E G P P P Sbjct: 951 PMGLGPAPYSWLADSWPHPSRSPSAQEPRGSCCPSNPDP 989
>ENA_DROME (Q8T4F7) Protein enabled| Length = 834 Score = 30.4 bits (67), Expect = 4.0 Identities = 27/80 (33%), Positives = 30/80 (37%) Frame = +2 Query: 155 PDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 334 P A P PP+ G G P P+ G P PA+ G A PAP P Sbjct: 553 PPAPAPPPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAM--------GGGPPPAPPAP-P 603 Query: 335 WRGGRLHDRRGPAPAR*VPG 394 GG GP PA PG Sbjct: 604 AMGG------GPPPAPGGPG 617
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 34/107 (31%) Frame = +2 Query: 116 EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 247 +P G + P++R HP R P RG++ R P H P RR Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRPPGQKPGPDLTSAPGRGSHGPPTRRAS 234 Query: 248 GVPQAPALKIFQ--DH----------------RRARGAEDARPAPSP 334 + A + + DH RRA + ARPAP+P Sbjct: 235 EARMSTAARDSEGWDHAHGGGTGDTSRSPAGLRRANSVQAARPAPAP 281
>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor| Length = 1159 Score = 30.4 bits (67), Expect = 4.0 Identities = 25/74 (33%), Positives = 29/74 (39%) Frame = +2 Query: 176 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLH 355 GR P G + PH R R P A + R+ARG E P PSP Sbjct: 50 GRSPEPGRL----GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP------- 98 Query: 356 DRRGPAPAR*VPGQ 397 GPAP PG+ Sbjct: 99 ---GPAPG---PGE 106
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 30.4 bits (67), Expect = 4.0 Identities = 24/76 (31%), Positives = 28/76 (36%) Frame = +2 Query: 137 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 316 AP + + D P RPP R R P PRP Q P + +A ED Sbjct: 209 APTSEALASGDDPQRPPPRRFRQRFRRPFRPRP----APQQTP--EGGDGEAKAESGEDP 262 Query: 317 RPAPSPWRGGRLHDRR 364 RP P R RR Sbjct: 263 RPEPQRQRNRPYVQRR 278
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II| Length = 140 Score = 30.4 bits (67), Expect = 4.0 Identities = 11/34 (32%), Positives = 25/34 (73%) Frame = +3 Query: 135 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 236 ++ +V+ ++ V ++DG++L+G +FD+ NL+L Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLML 49
>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein| Length = 72 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 165 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 257 V ++ R+ G+ +D HMNLVL + EE R Sbjct: 19 VRLKGAREFRGELKGYDIHMNLVLDNAEELR 49
>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein| Length = 77 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 165 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 257 V ++ GR+ G +D HMNLVL D EE + Sbjct: 19 VRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ 49
>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm| protein G) (Sm-G) (SmG) Length = 76 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 111 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 251 MS ++ ++++ RM + + GR + G FD MN+VL D E Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE 47
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/53 (39%), Positives = 22/53 (41%) Frame = +2 Query: 176 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 334 G PP R G PH RPR P A HRRA G D P P+P Sbjct: 1205 GPPPRRRARCGCPRPHPHRPRASHRAP--AAAPHHHRHRRAAGGWDF-PPPAP 1254
>K1543_HUMAN (Q9P1Y5) Protein KIAA1543| Length = 1249 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +2 Query: 119 PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVP 256 P+ +P R++P R PG P++ RSP RP LR P Sbjct: 752 PKAASPSPARRVPATRRSPGPGPSQSP----RSPKHTRPAELRLAP 793
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 29.6 bits (65), Expect = 6.9 Identities = 30/97 (30%), Positives = 37/97 (38%) Frame = +2 Query: 113 VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 292 VEP+G+ P Q P PG H +R PR L P+ P + Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHDSRGPPPHEMRGGPLTEPRPLMAEPRGPMI------- 392 Query: 293 RARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQGL 403 D R P RGGR D RG AR + +GL Sbjct: 393 ------DQRGPPLDGRGGR--DPRG-IDARAMEARGL 420
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 125 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 301 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 302 GAEDARPAPSPWRGG 346 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 125 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 301 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 873 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926 Query: 302 GAEDARPAPSPWRGG 346 G +P P GG Sbjct: 927 GI-TGKPGPKGNSGG 940
>PROB_PHOLL (Q7N7B2) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 368 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = +2 Query: 185 PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 316 P HGL SP E R R + G P PA +I DH GAE A Sbjct: 251 PVGTRFHGLESPMENRKRWIFGAP--PAGEIIVDH----GAETA 288
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 29.3 bits (64), Expect = 9.0 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +2 Query: 137 APVRQLPDARDH--PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAE 310 AP + +P A + PGR P + L PH PR L A A K +A GA+ Sbjct: 237 APPQPVPGAYPNTGPGRRP-----YALLHPHPPRYLLLSAPAYAGAPK------KAEGAD 285 Query: 311 DARPAPSP 334 A PAP P Sbjct: 286 LATPAPFP 293
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 125 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 301 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 302 GAEDARPAPSPWRGG 346 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = +2 Query: 125 GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 301 G P RQ P PG P GE G +P +P PR RG P P + R R Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924 Query: 302 GAEDARPAPSPWRGG 346 G +P P GG Sbjct: 925 GI-TGKPGPKGNSGG 938
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 29.3 bits (64), Expect = 9.0 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Frame = +2 Query: 149 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 316 Q+P+ R P RPP G G P P+PR +G P G Sbjct: 28 QIPNQRPPPSGFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 74 Query: 317 RP--APSPWRGGRLHDRRGPAP 376 RP P P G + +GP P Sbjct: 75 RPPQGPPPPGGPQPRPPQGPPP 96
>LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7| Length = 103 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 141 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 266 ++++ +RV Q GR+ G FD +NLVL E+ + P Sbjct: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDP 58
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = +2 Query: 146 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 325 R+ P + P RPP + R+ +PRP P P + + R AR + + P Sbjct: 755 RKRPVSNGRPARPPVTAGLVAARAAGDPRP------PHDPTHPLAESPRPARSSPASSPE 808 Query: 326 PSP 334 +P Sbjct: 809 LTP 811
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 29.3 bits (64), Expect = 9.0 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Frame = +2 Query: 149 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 316 Q+P+ R P RPP G G P P+PR +G P G Sbjct: 7 QIPNQRPPPSGSQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 53 Query: 317 RP--APSPWRGGRLHDRRGPAP 376 RP P P G + +GP P Sbjct: 54 RPPQGPPPPGGPQPRPPQGPPP 75
>NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochrome c-552)| (Cytochrome c552) Length = 161 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +2 Query: 140 PVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAP 265 P Q+ A D GR RG++ L P RR+R P+ P Sbjct: 33 PAVQIVPALDRLGRADVRGQIPPLGRPITDDVRRMRNYPEQP 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,396,080 Number of Sequences: 219361 Number of extensions: 989572 Number of successful extensions: 3732 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 3351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3688 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
