ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11e03 |
|---|---|
| Clone Library Name | barley_pub |
>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1| Length = 149 Score = 108 bits (270), Expect = 1e-23 Identities = 52/148 (35%), Positives = 82/148 (55%) Frame = +2 Query: 104 MLAVFDQTVAKCPEGLRSPPXXXXXXXXXXXXXLMKGFADANDAAVTVXXXXXXXXXXXX 283 MLAVF+Q++ + P L P + + F + Sbjct: 1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60 Query: 284 XNKNPLVPRMFGSVNDIFCLFQGHVENIGNLKQHYGLSKTANEVTILIEAYRTLRDRGPL 463 N+NPL PR ++D+FC+F G ++N +L++HYGLS+ A E I++EAY+ LRDR P Sbjct: 61 GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120 Query: 464 PASQVVRDLSGRFAFILYDTVSKSTFVA 547 P QV+++L G+FAFIL+D+ + + F+A Sbjct: 121 PPDQVIKELEGKFAFILFDSKASTLFLA 148
>ASNS_PONPY (Q5R6W9) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLS-KTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N ++QH+ +T + I++ Y D+G + Q + L G FAF Sbjct: 69 LWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLY----DKGGI--EQTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 +L DT +K F+ D G P F Sbjct: 123 VLLDTATKKVFLGRDTYGVRPLF 145
>ASNS_HUMAN (P08243) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) (Cell cycle control protein TS11) Length = 560 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLS-KTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N ++QH+ +T + I++ Y D+G + Q + L G FAF Sbjct: 69 LWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLY----DKGGI--EQTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 +L DT +K F+ D G P F Sbjct: 123 VLLDTANKKVFLGRDTYGVRPLF 145
>ASNS_CHICK (Q5ZJU3) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLS-KTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N L++ +G +T + +++ Y +RG + Q L G FAF Sbjct: 69 LWLCYNGEIYNFKQLQEQFGFEYQTLVDGEVILHLY----NRGGI--EQTASMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 IL DT ++ F+A D G P F Sbjct: 123 ILLDTANRKVFLARDTYGVRPLF 145
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Frame = +2 Query: 350 GHVENIGNLKQHYG---LSKTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFAFILYD 520 G + N L+ YG +T ++ +++ Y+ ++GP + + DL G FAF LYD Sbjct: 75 GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 127 Query: 521 TVSKSTFVAADADGSIPFFWGVD 589 + + + D G IP + G D Sbjct: 128 SEKDAYLIGRDHLGIIPLYMGYD 150
>ASNS_MESAU (P17714) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 36.2 bits (82), Expect = 0.072 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLSKTAN-EVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N L+Q + N + I++ Y D+G + Q + L G FAF Sbjct: 69 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLY----DKGGI--EQTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 IL DT +K F+ D G P F Sbjct: 123 ILLDTANKKVFLGRDTYGVRPLF 145
>ASNS_CRIGR (P19891) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 36.2 bits (82), Expect = 0.072 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLSKTAN-EVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N L+Q + N + I++ Y D+G + Q + L G FAF Sbjct: 69 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLY----DKGGI--EQTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 IL DT +K F+ D G P F Sbjct: 123 ILLDTANKKVFLGRDTYGVRPLF 145
>ASNS_RAT (P49088) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLSKTAN-EVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N L+Q + N + I++ Y D+G + + + L G FAF Sbjct: 69 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLY----DKGGI--EKTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 IL DT +K F+ D G P F Sbjct: 123 ILLDTANKKVFLGRDTYGVRPLF 145
>ASNS_MOUSE (Q61024) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 560 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = +2 Query: 332 IFCLFQGHVENIGNLKQHYGLSKTAN-EVTILIEAYRTLRDRGPLPASQVVRDLSGRFAF 508 ++ + G + N L+Q + N + I++ Y D+G + + + L G FAF Sbjct: 69 LWLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLY----DKGGI--EKTICMLDGVFAF 122 Query: 509 ILYDTVSKSTFVAADADGSIPFF 577 IL DT +K F+ D G P F Sbjct: 123 ILLDTANKKVFLGRDTYGVRPLF 145
>ASNH_MYCTU (P64247) Putative asparagine synthetase [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 652 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +2 Query: 341 LFQGHVENIGNLK-----QHYGLSKTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFA 505 +F G + N L+ QH + T + ++ Y ++V++ L G FA Sbjct: 87 VFNGEIYNYLELRDELRTQHGAVFATDGDGEAILAGYHHW-------GTEVLQRLRGMFA 139 Query: 506 FILYDTVSKSTFVAADADGSIPFF 577 F L+DTV++ F A D G P F Sbjct: 140 FALWDTVTRELFCARDPFGIKPLF 163
>ASNH_MYCBO (P64248) Putative asparagine synthetase [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 652 Score = 34.7 bits (78), Expect = 0.21 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Frame = +2 Query: 341 LFQGHVENIGNLK-----QHYGLSKTANEVTILIEAYRTLRDRGPLPASQVVRDLSGRFA 505 +F G + N L+ QH + T + ++ Y ++V++ L G FA Sbjct: 87 VFNGEIYNYLELRDELRTQHGAVFATDGDGEAILAGYHHW-------GTEVLQRLRGMFA 139 Query: 506 FILYDTVSKSTFVAADADGSIPFF 577 F L+DTV++ F A D G P F Sbjct: 140 FALWDTVTRELFCARDPFGIKPLF 163
>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) (Cholesterol efflux regulatory protein) Length = 2261 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -1 Query: 586 DAPEEGDTA--ISISSDEGGFRHRVVQDESKPSTEISHDLAGWERAPVPEGSVGLNQDGN 413 DAPE+ T ++ + + GF R ++ P T W APVP+ + L Q+GN Sbjct: 1394 DAPEDTGTLELLNALTKDPGFGTRCMEGNPIPDTPCQAGEEEWTTAPVPQTIMDLFQNGN 1453
>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) Length = 2261 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -1 Query: 586 DAPEEGDTA--ISISSDEGGFRHRVVQDESKPSTEISHDLAGWERAPVPEGSVGLNQDGN 413 DAPE+ T ++ + + GF R ++ P T W +PVP+ V L Q+GN Sbjct: 1394 DAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLAGEEDWTISPVPQSIVDLFQNGN 1453
>SUS2_HORVU (P31923) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = -1 Query: 490 EISHDLAGWERAPVPEGSVGLNQDGNLICCLAQTVVLLQVANVLNMSLEQAKYVIHRTKH 311 +++H++AG E P+ +G DGNL+ CL +A+ L ++ + + +TK+ Sbjct: 398 DVAHEIAG-ELQANPDLIIGNYSDGNLVACL--------LAHKLGVTHCTIAHALEKTKY 448 Query: 310 P 308 P Sbjct: 449 P 449
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = -3 Query: 476 PGWLGEGPCPGGFCRPQSGW*PHLLSCSDR----SVASGCQCSQHVLGTGKICH 327 PG+ G PGG CRP + ++ C +R + C+C +V+ G++C+ Sbjct: 856 PGYEGNPIQPGGKCRPVN---QEIVRCDERGSMGTSGEACRCKNNVV--GRLCN 904
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -3 Query: 476 PGWLGEGPCPGGFCRPQSGW*PHLLSCSDR----SVASGCQCSQHVLGTGKICHSQNQTS 309 PG+ G PGG CRP + ++ C +R + C+C +V+ G++C+ + S Sbjct: 856 PGYEGNPIQPGGKCRPTT---QEIVRCDERGSLGTSGETCRCKNNVV--GRLCNECSDGS 910 Query: 308 W 306 + Sbjct: 911 F 911 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,861,146 Number of Sequences: 219361 Number of extensions: 1150056 Number of successful extensions: 3255 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3254 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
