Clone Name | bart11d12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemota... | 29 | 9.6 | 2 | CY24A_MOUSE (Q61462) Cytochrome b-245 light chain (p22 phagocyte... | 29 | 9.6 | 3 | DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7) | 29 | 9.6 |
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>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -1 Query: 185 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 96 T+AA + ++ VRRTA G +S+VVS TR Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415
>CY24A_MOUSE (Q61462) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox) (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome b558 alpha subunit) (Superoxide-generating NADPH oxidase light ch Length = 191 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 442 DPDARPDTDAEQKPFHGEEEAAKA 513 +P RP + +KP GEEEAA A Sbjct: 153 NPPPRPPAEVRKKPSEGEEEAASA 176
>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1073 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +1 Query: 301 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 390 G H G SG + D P DVVPTE AR Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWAR 554 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,858,997 Number of Sequences: 219361 Number of extensions: 779670 Number of successful extensions: 2237 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2237 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)