ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11d02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 6e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 153 tggtggtggacttcgaggcgacttgcgagaaggacgctcggatctacccgcaggagatca 212 |||||||||||||||||||||| ||||||| || | |||||||||||||||||||||| Sbjct: 24572790 tggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcaggagatca 24572731 Query: 213 ttgagtttccggccgtgctcgtcgacggcgccaccggcc 251 | ||||| || || |||||||| |||| |||||| |||| Sbjct: 24572730 tcgagttccccgcggtgctcgtggacgccgccacgggcc 24572692 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 476 cgcaccatgctggagttcgagtgtcgattcaaggggatcgagaagccctcctactttgat 535 ||||||||||||||| ||||| || |||||||| |||| |||||| ||||||| || Sbjct: 24572476 cgcaccatgctggagcaggagtgccggttcaagggcatcgcgaagccggcctacttcgac 24572417 Query: 536 cgctggatcaacctgaggatccccttccaggcggctttcggcggcggagggc 587 || ||| || |||| ||| ||| |||| ||||||| ||||||||||| |||| Sbjct: 24572416 cggtgggtcgacctcagggtccacttcgaggcggcgttcggcggcggcgggc 24572365
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 93.7 bits (47), Expect = 6e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 153 tggtggtggacttcgaggcgacttgcgagaaggacgctcggatctacccgcaggagatca 212 |||||||||||||||||||||| ||||||| || | |||||||||||||||||||||| Sbjct: 153174 tggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcaggagatca 153115 Query: 213 ttgagtttccggccgtgctcgtcgacggcgccaccggcc 251 | ||||| || || |||||||| |||| |||||| |||| Sbjct: 153114 tcgagttccccgcggtgctcgtggacgccgccacgggcc 153076 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 476 cgcaccatgctggagttcgagtgtcgattcaaggggatcgagaagccctcctactttgat 535 ||||||||||||||| ||||| || |||||||| |||| |||||| ||||||| || Sbjct: 152860 cgcaccatgctggagcaggagtgccggttcaagggcatcgcgaagccggcctacttcgac 152801 Query: 536 cgctggatcaacctgaggatccccttccaggcggctttcggcggcggagggc 587 || ||| || |||| ||| ||| |||| ||||||| ||||||||||| |||| Sbjct: 152800 cggtgggtcgacctcagggtccacttcgaggcggcgttcggcggcggcgggc 152749
>dbj|AK064632.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H01, full insert sequence Length = 1134 Score = 93.7 bits (47), Expect = 6e-16 Identities = 86/99 (86%) Strand = Plus / Plus Query: 153 tggtggtggacttcgaggcgacttgcgagaaggacgctcggatctacccgcaggagatca 212 |||||||||||||||||||||| ||||||| || | |||||||||||||||||||||| Sbjct: 181 tggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcaggagatca 240 Query: 213 ttgagtttccggccgtgctcgtcgacggcgccaccggcc 251 | ||||| || || |||||||| |||| |||||| |||| Sbjct: 241 tcgagttccccgcggtgctcgtggacgccgccacgggcc 279 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 476 cgcaccatgctggagttcgagtgtcgattcaaggggatcgagaagccctcctactttgat 535 ||||||||||||||| ||||| || |||||||| |||| |||||| ||||||| || Sbjct: 495 cgcaccatgctggagcaggagtgccggttcaagggcatcgcgaagccggcctacttcgac 554 Query: 536 cgctggatcaacctgaggatccccttccaggcggctttcggcggcggagggc 587 || ||| || |||| ||| ||| |||| ||||||| ||||||||||| |||| Sbjct: 555 cggtgggtcgacctcagggtccacttcgaggcggcgttcggcggcggcgggc 606
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 192 ggatctacccgcaggagatcattgagtttccggccgtgctcgtcgacggcgccaccggc 250 |||| ||||||||||||||||| ||||| | |||| |||||||||||||||||||| Sbjct: 153192 ggatatacccgcaggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 153134 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/69 (84%) Strand = Plus / Minus Query: 446 gccgtcgtgacctgnggggactgggattgtcgcaccatgctggagttcgagtgtcgattc 505 ||||| ||||| || || |||||||| || ||||||||||||||| ||||| || ||| Sbjct: 152926 gccgtggtgacgtggggcgactgggactgccgcaccatgctggagggggagtgccggttc 152867 Query: 506 aaggggatc 514 ||||||||| Sbjct: 152866 aaggggatc 152858 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 318 gggacctcaccggcatccggcaggaggacgtagacggcggcgtggatctcggcgaggcgc 377 |||| |||||||||||| ||||| ||||| |||| ||||||||| ||| ||||||||| Sbjct: 153063 gggagctcaccggcatcgcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgc 153004 Query: 378 t 378 | Sbjct: 153003 t 153003
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 192 ggatctacccgcaggagatcattgagtttccggccgtgctcgtcgacggcgccaccggc 250 |||| ||||||||||||||||| ||||| | |||| |||||||||||||||||||| Sbjct: 18417827 ggatatacccgcaggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 18417769 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/69 (84%) Strand = Plus / Minus Query: 446 gccgtcgtgacctgnggggactgggattgtcgcaccatgctggagttcgagtgtcgattc 505 ||||| ||||| || || |||||||| || ||||||||||||||| ||||| || ||| Sbjct: 18417561 gccgtggtgacgtggggcgactgggactgccgcaccatgctggagggggagtgccggttc 18417502 Query: 506 aaggggatc 514 ||||||||| Sbjct: 18417501 aaggggatc 18417493 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 318 gggacctcaccggcatccggcaggaggacgtagacggcggcgtggatctcggcgaggcgc 377 |||| |||||||||||| ||||| ||||| |||| ||||||||| ||| ||||||||| Sbjct: 18417698 gggagctcaccggcatcgcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgc 18417639 Query: 378 t 378 | Sbjct: 18417638 t 18417638
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 192 ggatctacccgcaggagatcattgagtttccggccgtgctcgtcgacggcgccaccggc 250 |||| ||||||||||||||||| ||||| | |||| |||||||||||||||||||| Sbjct: 18577228 ggatatacccgcaggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 18577170 Score = 52.0 bits (26), Expect = 0.002 Identities = 58/69 (84%) Strand = Plus / Minus Query: 446 gccgtcgtgacctgnggggactgggattgtcgcaccatgctggagttcgagtgtcgattc 505 ||||| ||||| || || |||||||| || ||||||||||||||| ||||| || ||| Sbjct: 18576962 gccgtggtgacgtggggcgactgggactgccgcaccatgctggagggggagtgccggttc 18576903 Query: 506 aaggggatc 514 ||||||||| Sbjct: 18576902 aaggggatc 18576894 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 318 gggacctcaccggcatccggcaggaggacgtagacggcggcgtggatctcggcgaggcgc 377 |||| |||||||||||| ||||| ||||| |||| ||||||||| ||| ||||||||| Sbjct: 18577099 gggagctcaccggcatcgcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgc 18577040 Query: 378 t 378 | Sbjct: 18577039 t 18577039
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 196 ctacccgcaggagatcattgagtttcc 222 ||||||||| ||||||||||||||||| Sbjct: 200120 ctacccgcacgagatcattgagtttcc 200094
>ref|XM_842619.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0689) partial mRNA Length = 1509 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 196 ctacccgcaggagatcattgagtttcc 222 ||||||||| ||||||||||||||||| Sbjct: 714 ctacccgcacgagatcattgagtttcc 740
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 catggcgaagatggcaccgat 93 ||||||||||||||||||||| Sbjct: 1857371 catggcgaagatggcaccgat 1857351
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 accggcatccggcaggaggac 346 ||||||||||||||||||||| Sbjct: 1443101 accggcatccggcaggaggac 1443121 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 197 tacccgcaggagatcattgagtttccgg 224 ||||| || ||||||||||||||||||| Sbjct: 1446132 tacccacacgagatcattgagtttccgg 1446159
>gb|AC093543.8| Trypanosoma brucei chromosome 3 clone RPCI93-5L5, complete sequence Length = 148711 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 accggcatccggcaggaggac 346 ||||||||||||||||||||| Sbjct: 17313 accggcatccggcaggaggac 17333 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 197 tacccgcaggagatcattgagtttccgg 224 ||||| || ||||||||||||||||||| Sbjct: 20344 tacccacacgagatcattgagtttccgg 20371
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gctcggcgatccggcgagcgc 73 ||||||||||||||||||||| Sbjct: 2443367 gctcggcgatccggcgagcgc 2443347
>ref|XM_821797.1| Trypanosoma brucei TREU927 clone RPCI93-5L5 hypothetical protein (Tb927.3.5140) partial mRNA Length = 2289 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 accggcatccggcaggaggac 346 ||||||||||||||||||||| Sbjct: 1843 accggcatccggcaggaggac 1863
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 gctcggcgatccggcgagcgc 73 ||||||||||||||||||||| Sbjct: 1941191 gctcggcgatccggcgagcgc 1941211
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 gctcgtcgacggcgccaccggcctc 253 |||||||||||||| |||||||||| Sbjct: 6978295 gctcgtcgacggcgacaccggcctc 6978271
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cggcggcgtggatctcggcgaggcg 376 |||||||||||||| |||||||||| Sbjct: 23459722 cggcggcgtggatcgcggcgaggcg 23459698
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 tgctcgtcgacggcgccaccggcct 252 |||||| |||||||||||||||||| Sbjct: 973561 tgctcgacgacggcgccaccggcct 973585
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cggcggcgtggatctcggcgaggcg 376 |||||||||||||| |||||||||| Sbjct: 119277 cggcggcgtggatcgcggcgaggcg 119253
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 tcgtcgacggcgccaccggcc 251 ||||||||||||||||||||| Sbjct: 3602704 tcgtcgacggcgccaccggcc 3602724
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cggcgagcgcatggcgaagat 84 ||||||||||||||||||||| Sbjct: 3266332 cggcgagcgcatggcgaagat 3266312
>ref|XM_479919.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1134 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ggacgtagacggcggcgtgg 362 |||||||||||||||||||| Sbjct: 271 ggacgtagacggcggcgtgg 252
>ref|NM_196551.1| Oryza sativa (japonica cultivar-group) putative inositol-1,4,5-trisphosphate 5-Phosphatase-like protein (OSJNBa0075H14.7), mRNA Length = 1581 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gtcgcaccatgctggagttc 493 |||||||||||||||||||| Sbjct: 1341 gtcgcaccatgctggagttc 1322
>ref|XM_479470.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tcgtcgacggcgccaccggc 250 |||||||||||||||||||| Sbjct: 521 tcgtcgacggcgccaccggc 540
>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence Length = 157844 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 133913 gcaccatgctggagttcgag 133932
>gb|AC163443.6| Mus musculus chromosome 15, clone RP23-284G17, complete sequence Length = 213017 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2685 gcaccatgctggagttcgag 2704
>gb|BC080543.1| Homo sapiens cDNA clone IMAGE:5556479, with apparent retained intron Length = 1629 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 126 cgcgggcaggggctgggcca 145
>ref|XM_361336.1| Magnaporthe grisea 70-15 hypothetical protein (MG03810.4) partial mRNA Length = 12735 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 cggccgtgctcgtcgacggc 241 |||||||||||||||||||| Sbjct: 5594 cggccgtgctcgtcgacggc 5575
>ref|XM_960699.1| Neurospora crassa OR74A hypothetical protein (NCU00652.1) partial mRNA Length = 3564 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 tttcggcggcggagggcggg 590 |||||||||||||||||||| Sbjct: 3277 tttcggcggcggagggcggg 3258
>ref|NM_030993.1| Rattus norvegicus dendrin (Ddn), mRNA Length = 3582 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1762 gcggcgcgcgggcgggggctgggc 1785
>ref|XM_324831.1| Neurospora crassa OR74A hypothetical protein (NCU00652.1) partial mRNA Length = 3564 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 tttcggcggcggagggcggg 590 |||||||||||||||||||| Sbjct: 3277 tttcggcggcggagggcggg 3258
>ref|NM_009375.1| Mus musculus thyroglobulin (Tgn), mRNA Length = 8301 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2257 gcaccatgctggagttcgag 2238
>gb|AC101757.12| Mus musculus chromosome 8, clone RP24-545I11, complete sequence Length = 148875 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 atccccttccaggcggcttt 573 |||||||||||||||||||| Sbjct: 92532 atccccttccaggcggcttt 92513
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 76 ggcgaagatggcaccgatcatggcggcg 103 ||||||||||||| ||||||| |||||| Sbjct: 2096463 ggcgaagatggcaacgatcatcgcggcg 2096490
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 83 atggcaccgatcatggcggcgcgcgggc 110 ||||||||||||||| ||||||||||| Sbjct: 701910 atggcaccgatcatgctggcgcgcgggc 701883
>ref|XM_001003605.1| PREDICTED: Mus musculus dendrin (Ddn), mRNA Length = 3903 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 2049 gcggcgcgcgggcgggggctgggc 2072
>ref|XM_912147.2| PREDICTED: Mus musculus dendrin (Ddn), mRNA Length = 3526 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1672 gcggcgcgcgggcgggggctgggc 1695
>ref|XM_619356.3| PREDICTED: Mus musculus dendrin (Ddn), mRNA Length = 3745 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1891 gcggcgcgcgggcgggggctgggc 1914
>gb|AC096775.5| Homo sapiens BAC clone RP11-350C21 from 7, complete sequence Length = 99452 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ggctttcccagatctccagtttgc 54 ||||||||||||||||||| |||| Sbjct: 66517 ggctttcccagatctccagcttgc 66540
>ref|XM_821798.1| Trypanosoma brucei TREU927 clone RPCI93-5L5 exonuclease (Tb927.3.5150) partial mRNA Length = 876 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 197 tacccgcaggagatcattgagtttccgg 224 ||||| || ||||||||||||||||||| Sbjct: 130 tacccacacgagatcattgagtttccgg 157
>ref|XM_801436.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510997.20) partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gcggcaacggcgaaggcagg 423 |||||||||||||||||||| Sbjct: 721 gcggcaacggcgaaggcagg 702
>ref|XM_809041.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506959.60) partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gcggcaacggcgaaggcagg 423 |||||||||||||||||||| Sbjct: 721 gcggcaacggcgaaggcagg 702
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttccggccgtgctcgtcgacggcg 242 ||||||||| |||||||||||||| Sbjct: 121027 ttccggccgcgctcgtcgacggcg 121050
>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a novel protein similar to KIAA0592, solute carrier family 9 member 3 (SLC9A3) pseudogene and novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), complete sequence Length = 163231 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 aacctgaggatccccttcca 564 |||||||||||||||||||| Sbjct: 95898 aacctgaggatccccttcca 95879
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 aacctgaggatccccttcca 564 |||||||||||||||||||| Sbjct: 128093 aacctgaggatccccttcca 128112
>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part of gene FLJ10824, a solute carrier family 9 (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene, the ASAH2 gene for N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 and a dynein cytoplasmic intermediate polypeptide 2 (DNCI2) pseudogene, complete sequence Length = 162228 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 aacctgaggatccccttcca 564 |||||||||||||||||||| Sbjct: 49182 aacctgaggatccccttcca 49163
>gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chromosome 10, complete sequence Length = 167069 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 aacctgaggatccccttcca 564 |||||||||||||||||||| Sbjct: 72324 aacctgaggatccccttcca 72343
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ggccgtgctcgtcgacggcg 242 |||||||||||||||||||| Sbjct: 18353 ggccgtgctcgtcgacggcg 18334
>gb|AC161165.5| Mus musculus chromosome 15, clone RP23-278C10, complete sequence Length = 176135 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 14980 gcggcgcgcgggcgggggctgggc 14957
>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence Length = 153570 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 28736 cgcgggcaggggctgggcca 28755
>dbj|AK156009.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830003O21 product:unclassifiable, full insert sequence Length = 1229 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 atccccttccaggcggcttt 573 |||||||||||||||||||| Sbjct: 1136 atccccttccaggcggcttt 1117
>dbj|AK158894.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K430359L18 product:Dendrin homolog [Rattus norvegicus], full insert sequence Length = 3739 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1892 gcggcgcgcgggcgggggctgggc 1915
>dbj|AK164154.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630016N02 product:Dendrin homolog [Rattus norvegicus], full insert sequence Length = 3349 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1500 gcggcgcgcgggcgggggctgggc 1523
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tggcgaagatggcaccgatc 94 |||||||||||||||||||| Sbjct: 5703822 tggcgaagatggcaccgatc 5703841
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 gatctcggcgaggcgctctggatg 385 |||||||||||||||||| ||||| Sbjct: 3126929 gatctcggcgaggcgctcgggatg 3126906
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggctgaaggcggcaacggcg 415 |||||||||||||||||||| Sbjct: 1765678 ggctgaaggcggcaacggcg 1765697
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttccggccgtgctcgtcgacggcg 242 ||||||||| |||||||||||||| Sbjct: 11667092 ttccggccgcgctcgtcgacggcg 11667115
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ggacgtagacggcggcgtgg 362 |||||||||||||||||||| Sbjct: 1636147 ggacgtagacggcggcgtgg 1636128
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcgtcgacggcgccaccggc 250 |||||||||||||||||||| Sbjct: 28382689 tcgtcgacggcgccaccggc 28382670
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 gcggcgtggatctcggcgag 373 |||||||||||||||||||| Sbjct: 3170229 gcggcgtggatctcggcgag 3170210
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tcgtcgacggcgccaccggc 250 |||||||||||||||||||| Sbjct: 108252 tcgtcgacggcgccaccggc 108233
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ggacgtagacggcggcgtgg 362 |||||||||||||||||||| Sbjct: 35647 ggacgtagacggcggcgtgg 35628
>dbj|AK119814.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-A06, full insert sequence Length = 2893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gtcgcaccatgctggagttc 493 |||||||||||||||||||| Sbjct: 1871 gtcgcaccatgctggagttc 1852
>emb|AJ335566.1|HSA335566 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DF2R Length = 804 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 15 cgcgggcaggggctgggcca 34
>emb|AJ333835.1|HSA333835 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DA1C Length = 657 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 15 cgcgggcaggggctgggcca 34
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tccaggcggctttcggcggc 580 |||||||||||||||||||| Sbjct: 1104722 tccaggcggctttcggcggc 1104741
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 cggcgtggatctcggcgaggcgct 378 ||||| |||||||||||||||||| Sbjct: 1375861 cggcgaggatctcggcgaggcgct 1375884
>emb|X96589.1|RNDENDRIN R.norvegicus mRNA for dendrin Length = 3624 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1814 gcggcgcgcgggcgggggctgggc 1837
>emb|Y09000.1|RNDENDR R.norvegicus mRNA for dendrin Length = 3582 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1762 gcggcgcgcgggcgggggctgggc 1785
>gb|BC111467.1| Mus musculus thyroglobulin, mRNA (cDNA clone MGC:117699 IMAGE:30841130), complete cds Length = 8456 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2272 gcaccatgctggagttcgag 2253
>dbj|AK122363.1| Mus musculus mRNA for mKIAA0749 protein Length = 3615 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcgcgcgggcaggggctgggc 121 ||||||||||||| |||||||||| Sbjct: 1766 gcggcgcgcgggcgggggctgggc 1789
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttccggccgtgctcgtcgacggcg 242 ||||||||| |||||||||||||| Sbjct: 11673532 ttccggccgcgctcgtcgacggcg 11673555
>gb|AF076187.1|AF076187 Mus musculus AKR/J normal thyroglobulin mRNA, complete cds Length = 8301 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2257 gcaccatgctggagttcgag 2238
>gb|AF076186.1|AF076186 Mus musculus cog thyroglobulin mRNA, complete cds Length = 8301 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2257 gcaccatgctggagttcgag 2238
>gb|U76389.1|MMU76389 Mus musculus thyroglobulin mRNA, complete cds Length = 8356 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gcaccatgctggagttcgag 496 |||||||||||||||||||| Sbjct: 2296 gcaccatgctggagttcgag 2277
>emb|AL672210.14| Mouse DNA sequence from clone RP23-44A17 on chromosome X, complete sequence Length = 110996 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gaaggcagggaacaggagat 434 |||||||||||||||||||| Sbjct: 103951 gaaggcagggaacaggagat 103970
>emb|AJ343287.1|HSA343287 Homo sapiens genomic sequence surrounding NotI site, clone NR1-AM3R Length = 707 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 15 cgcgggcaggggctgggcca 34
>gb|M32405.1|HUMRIGA Human homologue of rat insulinoma gene (rig), exons 1-4 Length = 2862 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cgcgggcaggggctgggcca 123 |||||||||||||||||||| Sbjct: 1082 cgcgggcaggggctgggcca 1101 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,469,252 Number of Sequences: 3902068 Number of extensions: 3469252 Number of successful extensions: 68260 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66235 Number of HSP's gapped (non-prelim): 2019 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
