ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart11c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 73 6e-13
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 71 2e-12
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 45 2e-04
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 41 0.002
5LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglyc... 38 0.022
6ITAX_HUMAN (P20702) Integrin alpha-X precursor (Leukocyte adhesi... 37 0.029
7TYSY_ZYMMO (Q9Z671) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase) 32 1.2
8PHF8_MOUSE (Q80TJ7) PHD finger protein 8 30 4.6
9Y1288_MYCBO (P64784) Hypothetical protein Mb1288c 30 6.0
10Y1258_MYCTU (P64783) Hypothetical protein Rv1258c/MT1297 30 6.0
11MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 30 6.0

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 72.8 bits (177), Expect = 6e-13
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +1

Query: 175 YAVIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDFIAQELG 354
           +  IFNFGDS  D G     G+      A  P+G ++FG P GR  DGRLV+DFIA+ LG
Sbjct: 28  FPAIFNFGDSNSDTG-----GLSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82

Query: 355 LPLLPP-SKARNATFHHGANFAITGA 429
           LP L     +  + F HGANFA  G+
Sbjct: 83  LPYLSAFLDSVGSNFSHGANFATAGS 108



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
 Frame = +1

Query: 175 YAVIFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDFIAQELG 354
           +  IFNFGDS  D G       P        PYG T+F   TGR SDGRL++DFIA+   
Sbjct: 32  FPAIFNFGDSNSDTGGKAAAFYP-----LNPPYGETFFHRSTGRYSDGRLIIDFIAESFN 86

Query: 355 LPLLPP-SKARNATFHHGANFAITGAT-ALDTSYFVAKG 465
           LP L P   +  + F HGA+FA  G+T  L T+   A G
Sbjct: 87  LPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHG 125



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
 Frame = +1

Query: 184 IFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTY-FGYPTGRCSDGRLVVDFIAQELGLP 360
           +F FGDS+ D GN   + +   L     PYGM +  G  TGR S+GR+  D+I++ LG+ 
Sbjct: 126 VFFFGDSIFDTGNN--NNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVK 183

Query: 361 LLPP----------SKARNATFHHGANFAITGATALDTSYFVAKGLGKTVWNSGSLHTQI 510
            + P          ++ + +    G +FA  GA  L  +           W   ++  Q+
Sbjct: 184 EIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQT--------SESWKVTTMLDQL 235

Query: 511 KWLQEMKPKI 540
            + Q+ K ++
Sbjct: 236 TYFQDYKKRM 245



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
 Frame = +1

Query: 184 IFNFGDSLVDAGNLVVDGIPEYLATAKLPYGMTY-FGYPTGRCSDGRLVVDFIAQELGLP 360
           +F FGDS+ D GN   + +   + +   PYGM + F   TGR S+G +  D++A+ +G+ 
Sbjct: 205 VFFFGDSVFDTGN--NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGVK 262

Query: 361 LLPPS----KARNATFHHGANFAITGA 429
            + P+    K +      G +FA  GA
Sbjct: 263 EIVPAYLDPKIQPNDLLTGVSFASGGA 289



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>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 645

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = +1

Query: 166 ADKYAVIFNFGDSLVDAGN---LVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVVDF 336
           A  Y  ++ FGDSL D GN     VDGI                       ++ +L  DF
Sbjct: 22  AHAYNNLYVFGDSLSDGGNNGRYTVDGI---------------------NGTESKLYNDF 60

Query: 337 IAQELGLPLLPPSKARNATFHHGANFAITGATAL 438
           IAQ+LG+ L+   K        G N+A  GATA+
Sbjct: 61  IAQQLGIELVNSKKG-------GTNYAAGGATAV 87



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>ITAX_HUMAN (P20702) Integrin alpha-X precursor (Leukocyte adhesion|
           glycoprotein p150,95 alpha chain) (Leukocyte adhesion
           receptor p150,95) (Leu M5) (CD11c antigen)
          Length = 1163

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
 Frame = +1

Query: 193 FGDSLVD-AGNLVVDGIPEYLATAKLPYGMTYFGYPTGRCSDGRLVV--DFIAQELGLPL 363
           FGDS+V  A + VV G P+ +  A    G+   GY TG C    L V  + +   LGL L
Sbjct: 37  FGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSL 96

Query: 364 ---LPPSK--ARNATFHH--GANFAITG 426
                PS+  A   T HH  G N  +TG
Sbjct: 97  ASTTSPSQLLACGPTVHHECGRNMYLTG 124



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>TYSY_ZYMMO (Q9Z671) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 296

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 382 RNATFHHGANFAITGATALDTSYFVAKGL--GKTVWNSGSLHTQIKWLQEMKPKICSSPK 555
           R+A    G  F + GA AL        GL  G  VW  G +H     + +MK ++   P+
Sbjct: 198 RSADVFLGLPFNLVGAAALQAMLADQAGLALGDLVWTGGDVHIYRNHIDQMKEQLAREPR 257

Query: 556 S 558
           +
Sbjct: 258 A 258



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>PHF8_MOUSE (Q80TJ7) PHD finger protein 8|
          Length = 1023

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = -2

Query: 491 PEFHTVLPSPLATK*LVSSAVAPVMAKLAPWWNVALRALDGGSSGSPSSCAMKSTTRRPS 312
           P     +   L    L SS+ +P  + L  WW        G SS    + +    ++R  
Sbjct: 716 PSTQEAIQGMLCMANLQSSSSSPATSSLQAWWTGGQERSSGSSSSGLGTVSSSPASQRTP 775

Query: 311 EQRPVGYP 288
            +RP+  P
Sbjct: 776 GKRPIKRP 783



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>Y1288_MYCBO (P64784) Hypothetical protein Mb1288c|
          Length = 419

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 546 AADFGLHLLQPLDLRVQGAGVPHRLAQPLG 457
           A  FGL +L    L+++GAG PH  ++P G
Sbjct: 178 ATAFGLSILAIAALQLEGAGKPHHTSRPQG 207



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>Y1258_MYCTU (P64783) Hypothetical protein Rv1258c/MT1297|
          Length = 419

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 546 AADFGLHLLQPLDLRVQGAGVPHRLAQPLG 457
           A  FGL +L    L+++GAG PH  ++P G
Sbjct: 178 ATAFGLSILAIAALQLEGAGKPHHTSRPQG 207



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 392  VALRALDGGSSGSPSSCAMKSTTRRPSEQRPV 297
            +A R   GG  G  SS   + T RRP E +P+
Sbjct: 2412 IAYRMKGGGQPGGGSSSGTEDTPRRPPEPKPI 2443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,913,908
Number of Sequences: 219361
Number of extensions: 1052358
Number of successful extensions: 3909
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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