ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11c10 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 86.3 bits (212), Expect = 6e-17 Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 1/106 (0%) Frame = +3 Query: 96 LVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRA 275 +++LA + +C F AI++FGDS SDTG G A PPYGETFF R+ Sbjct: 20 MLSLAYASETC-------DFPAIFNFGDSNSDTG-----GKAAAFYPLNPPYGETFFHRS 67 Query: 276 TCRCSDGRLVVDFLAEKFGLPLLKPSKQG-GADFKKGANMAIIGAT 410 T R SDGRL++DF+AE F LP L P G++FK GA+ A G+T Sbjct: 68 TGRYSDGRLIIDFIAESFNLPYLSPYLSSLGSNFKHGADFATAGST 113
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 72.4 bits (176), Expect = 9e-13 Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Frame = +3 Query: 153 FNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFG 332 F AI++FGDS SDTG L AG PP+G +FFG R DGRLV+DF+AE G Sbjct: 28 FPAIFNFGDSNSDTGGLSAAFGQAG-----PPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82 Query: 333 LPLLKPSKQG-GADFKKGANMAIIGA 407 LP L G++F GAN A G+ Sbjct: 83 LPYLSAFLDSVGSNFSHGANFATAGS 108
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 43.9 bits (102), Expect = 3e-04 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 6/172 (3%) Frame = +3 Query: 6 PPNLPSVERSLLPLPVLRASQPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSM 185 PP P+ + P P + S P A SP A S + A++ FGDS+ Sbjct: 75 PPPSPAPKPVPPPSPSPKPSPPKPPAPSPKPSPPKPPAPSP-PKPQNKTIPAVFFFGDSI 133 Query: 186 SDTGNLCVNGPPAGLTLTQPPYGETF-FGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQG 362 DTGN N L PYG F G AT R S+GR+ D++++ G+ + P+ Sbjct: 134 FDTGN--NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIVPAY-- 189 Query: 363 GADFKKGANMAIIGATTMGSSFFQSLGVG-----DKIWNNGPLDTQIQWFQN 503 D K N + + + F S G G + W + Q+ +FQ+ Sbjct: 190 -VDKKLQQNNELQQSDLLTGVSFASGGAGYLPQTSESWKVTTMLDQLTYFQD 240
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 40.0 bits (92), Expect = 0.005 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Frame = +3 Query: 159 AIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETF-FGRATCRCSDGRLVVDFLAEKFGL 335 A++ FGDS+ DTGN N + PYG F F AT R S+G + D+LA+ G+ Sbjct: 204 AVFFFGDSVFDTGN--NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261 Query: 336 PLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVG-----DKIWNNGPLDTQIQWFQ 500 + P+ D K N + G + F S G G + N P+ Q+ +FQ Sbjct: 262 KEIVPAY---LDPKIQPNDLLTGVS------FASGGAGYNPTTSEAANAIPMLDQLTYFQ 312 Query: 501 NLLPSV 518 + + V Sbjct: 313 DYIEKV 318
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 38.1 bits (87), Expect = 0.018 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Frame = +3 Query: 96 LVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRA 275 + A M+A S + +N +Y FGDS+SD GN GR Sbjct: 6 IFAPGMLALSISAISNAHAYNNLYVFGDSLSDGGN---------------------NGRY 44 Query: 276 T---CRCSDGRLVVDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLG 443 T ++ +L DF+A++ G+ L+ SK+GG ++ G A+ ++ Q +G Sbjct: 45 TVDGINGTESKLYNDFIAQQLGIELVN-SKKGGTNYAAGGATAVADLNNKHNTQDQVMG 102
>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC| 2.3.1.43) (Glycerophospholipid-cholesterol acyltransferase) (GCAT) Length = 335 Score = 33.1 bits (74), Expect = 0.58 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Frame = +3 Query: 105 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 284 L +VA + A S F+ I FGDS+SDTG + G + PPY E R Sbjct: 9 LGLVALTVQAADSRPAFSRIVMFGDSLSDTGKM--YSKMRGYLPSSPPYYEG-------R 59 Query: 285 CSDGRLVVDFLAEKF-GLPLLKPSKQG 362 S+G + ++ L +F GL + ++ G Sbjct: 60 FSNGPVWLEQLTNEFPGLTIANEAEGG 86
>ESTA_PSEPU (Q6B6R8) Esterase estA precursor (EC 3.1.1.1)| Length = 646 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 78 MASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLT 233 MA PL+ A + + S + ++ + FGDS+SD G PAG T Sbjct: 4 MALKPLVAACLLASLSTAPQAAPSPYSTLVVFGDSLSDAGQFPDPAGPAGST 55
>ESTA_PSEAE (O33407) Esterase estA precursor (EC 3.1.1.1)| Length = 646 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 78 MASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLT 233 MA PL+ A + + S + ++ + FGDS+SD G PAG T Sbjct: 4 MALKPLVAACLLASLSTAPQAAPSPYSTLVVFGDSLSDAGQFPDPAGPAGST 55
>NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NUP159)| Length = 1460 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/88 (27%), Positives = 31/88 (35%) Frame = +3 Query: 168 SFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLK 347 SFG +GN V P +G +P +G FG FG P Sbjct: 554 SFGTPSFGSGNSSVEPPASGSAFGKPSFGTPSFGSGNSSAEP-----PASGSAFGKPSFG 608 Query: 348 PSKQGGADFKKGANMAIIGATTMGSSFF 431 S G A + + +I G GSS F Sbjct: 609 TSAFGTASSNETNSGSIFGKAAFGSSSF 636
>PCDGB_PANTR (Q5DRC0) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 30.8 bits (68), Expect = 2.9 Identities = 31/128 (24%), Positives = 51/128 (39%) Frame = +3 Query: 105 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 284 LA + +S F+ V G + +F + S +L + + L QP YG+T + +C Sbjct: 733 LAGMPTSHFVGVDG-----VQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787 Query: 285 CSDGRLVVDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVGDKIWN 464 S+ L+ AE + L K + A G+S Q+ G W Sbjct: 788 KSEPLLI----AEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQN-GDDTGTWP 842 Query: 465 NGPLDTQI 488 N DT++ Sbjct: 843 NNQFDTEM 850
>PCDGB_HUMAN (Q9Y5H2) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 30.8 bits (68), Expect = 2.9 Identities = 31/128 (24%), Positives = 51/128 (39%) Frame = +3 Query: 105 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 284 LA + +S F+ V G + +F + S +L + + L QP YG+T + +C Sbjct: 733 LAGMPTSHFVGVDG-----VQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787 Query: 285 CSDGRLVVDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVGDKIWN 464 S+ L+ AE + L K + A G+S Q+ G W Sbjct: 788 KSEPLLI----AEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQN-GDDTGTWP 842 Query: 465 NGPLDTQI 488 N DT++ Sbjct: 843 NNQFDTEM 850
>IDI2_THEVO (Q97CC2) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 347 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 306 VDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVG 449 VDFL + G P++ S GGA+ K N + T+ + ++GVG Sbjct: 47 VDFLGKHLGFPMVISSMTGGAEIAKKINYNL---ATVAEKYQLAMGVG 91
>TSP17_CAEEL (Q11098) Tetraspanin-17| Length = 243 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 40 SHSRCSELASQRQWRRP-RCSWRLRWWPRHASW 135 S++RC ++ + RQWR CS RL W W Sbjct: 174 SYARCQQIGANRQWRHAVGCSERLMSWFNEQIW 206
>NUOF_RICCN (Q92JB2) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 29.6 bits (65), Expect = 6.4 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Frame = +3 Query: 66 QPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDT-------GNLCVNGPPA 224 +P + LL + A+ A++C++ + G+ +N + ++ + N C +G Sbjct: 100 EPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDC 159 Query: 225 GLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQGG 365 + L + G C + +++ L K G+P LKP G Sbjct: 160 NIYLHR--------GAGAYICGEETALLESLEGKKGMPRLKPPFPAG 198
>NUOF_RICPR (Q9ZE33) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 29.3 bits (64), Expect = 8.3 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Frame = +3 Query: 66 QPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDT-------GNLCVNGPPA 224 +P + L+ + A+ A++C++ + G+ +N + ++ + N C +G Sbjct: 100 EPHKLIEGCLIASFAIGANTCYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDC 159 Query: 225 GLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQGG 365 + L + G C + +++ L K G+P LKP G Sbjct: 160 NIYLHR--------GAGAYICGEETALLESLEGKKGMPRLKPPFPAG 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,571,637 Number of Sequences: 219361 Number of extensions: 1156277 Number of successful extensions: 4628 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4623 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
