ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart11c05 |
|---|---|
| Clone Library Name | barley_pub |
>ZC11A_CHICK (Q5ZJJ1) Zinc finger CCCH-type domain-containing protein 11A| Length = 723 Score = 56.2 bits (134), Expect = 7e-08 Identities = 35/113 (30%), Positives = 43/113 (38%), Gaps = 1/113 (0%) Frame = +2 Query: 95 GTDCIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAKCSFRHPPLDDLLG 274 G DC +Y S TCNKG C +RH +AA N C W G C C FRH +D Sbjct: 5 GDDCYFYFYS--TCNKGDNCPFRHCEAALGNETICTLWKEGRCFRNVCRFRHMEID---- 58 Query: 275 XXXXXXXXXXXXXXXXXXXXXXXXNGTAKPVVPCYY-FQKGMCAKGNLCTFSH 430 + +PC++ Q G C K N C F H Sbjct: 59 --------------------------KKRSEIPCFWENQPGGCQKSN-CAFHH 84
>ZC11A_MOUSE (Q6NZF1) Zinc finger CCCH-type domain-containing protein 11A| Length = 792 Score = 53.1 bits (126), Expect = 6e-07 Identities = 24/56 (42%), Positives = 28/56 (50%) Frame = +2 Query: 95 GTDCIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAKCSFRHPPLD 262 G DC +Y S TC KG C +RH +AA N C W G C C FRH +D Sbjct: 5 GEDCYFYFYS--TCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58 Score = 29.3 bits (64), Expect = 8.5 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 374 CYYFQKGMCAKGNLCTFSHGPQFAGN 451 CY++ CAKG+ C F H GN Sbjct: 8 CYFYFYSTCAKGDSCPFRHCEAALGN 33
>ZC11A_HUMAN (O75152) Zinc finger CCCH-type domain-containing protein 11A| Length = 810 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/56 (41%), Positives = 28/56 (50%) Frame = +2 Query: 95 GTDCIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAKCSFRHPPLD 262 G DC ++ S TC KG C +RH +AA N C W G C C FRH +D Sbjct: 5 GEDCYFFFYS--TCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEID 58
>ZC11A_PONPY (Q5REG6) Zinc finger CCCH-type domain-containing protein 11A| Length = 811 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +2 Query: 95 GTDCIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAKCSFRHPPLD 262 G DC Y+ TC KG C +RH +AA N C W G C C FRH +D Sbjct: 5 GEDC-YFFFFYSTCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 59
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 38.9 bits (89), Expect = 0.011 Identities = 41/176 (23%), Positives = 59/176 (33%), Gaps = 28/176 (15%) Frame = +2 Query: 134 CNKGSECEYRHSDAARVNPRDCWYWFNGNCANAKCSFRHPPLDDLLGXXXXXXXXXXXXX 313 C KG +CE+ H P +Y G C+N +C F H + + Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135 Query: 314 XXXXXXXXXXXNGTAKPVVPCYYFQKGMCAKGNLCTFSHGPQF----------------- 442 V C + G C +G C F H P+F Sbjct: 136 PLCRHRHTRR--------VICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQPPLPQQTQ 186 Query: 443 -----AGNPALQLKNS-NSWTKANNSPQQSTTPVVHGELK-----VGAQNGRPAQK 577 + NP LQ +S T N+SP Q TP V G ++ G + RP ++ Sbjct: 187 PPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQSQNSSAGNRGPRPLEQ 242 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANA-KCSFRH 250 C ++L + C KG C +RH + C +W G C +C F H Sbjct: 41 CEFFLKA--ACGKGGMCPFRHISGEKTVV--CKHWLRGLCKKGDQCEFLH 86
>ZFNL_PEA (Q9SWF9) Zinc finger CCCH type domain-containing protein ZFN-like| Length = 417 Score = 37.4 bits (85), Expect = 0.031 Identities = 42/163 (25%), Positives = 55/163 (33%), Gaps = 22/163 (13%) Frame = +2 Query: 101 DCIYYLASPLTCNKGSECEYRHSD---------------AARVNPRDCWYWFN-GNCA-N 229 DC YY+ + L C G+ C + H R+ +C Y+ G C Sbjct: 35 DCSYYIRTGL-CRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFG 93 Query: 230 AKCSFRHPPLDDLLGXXXXXXXXXXXXXXXXXXXXXXXXNGTAKPVVP-----CYYFQKG 394 A C F HP D G N P+ P YY + G Sbjct: 94 ATCRFHHPK--DKAGVAGRVAL-----------------NILGYPLRPNESERAYYLRTG 134 Query: 395 MCAKGNLCTFSHGPQFAGNPALQLKNSNSWTKANNSPQQSTTP 523 C GN C F H PQ N L ++ S + + Q TTP Sbjct: 135 QCKFGNTCKFHH-PQ-PSNMVLSMRGSTVYP----TVQSPTTP 171
>MBN3_MOUSE (Q8R003) Muscleblind-like X-linked protein (Muscleblind-like| protein 3) (Cys3His CCG1-required protein) (MCHCR protein) Length = 342 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Frame = +2 Query: 134 CNKG-SECEYRH-SDAARVNPRD-----CWYWFNGNCANAKCSFRHPP 256 C +G SEC Y H +D + + D C + G C+ KC + HPP Sbjct: 188 CTRGESECRYAHPTDVSMIEVTDNSVTICMDYIKGRCSREKCKYFHPP 235
>MBNL_MOUSE (Q9JKP5) Muscleblind-like protein (Triplet-expansion RNA-binding| protein) Length = 341 Score = 35.0 bits (79), Expect = 0.16 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%) Frame = +2 Query: 134 CNKG-SECEYRH-SDAARVNPRD-----CWYWFNGNCANAKCSFRHPP 256 CN+G ++C + H +D+ ++ D C + G C+ KC + HPP Sbjct: 192 CNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 239
>MBNL_HUMAN (Q9NR56) Muscleblind-like protein (Triplet-expansion RNA-binding| protein) Length = 388 Score = 35.0 bits (79), Expect = 0.16 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%) Frame = +2 Query: 134 CNKG-SECEYRH-SDAARVNPRD-----CWYWFNGNCANAKCSFRHPP 256 CN+G ++C + H +D+ ++ D C + G C+ KC + HPP Sbjct: 193 CNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
>MBN3_HUMAN (Q9NUK0) Muscleblind-like X-linked protein (Muscleblind-like| protein 3) (Cys3His CCG1-required protein) (HCHCR protein) Length = 354 Score = 35.0 bits (79), Expect = 0.16 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%) Frame = +2 Query: 134 CNKG-SECEYRH-SDAARVNPRD-----CWYWFNGNCANAKCSFRHPP 256 C +G ++C Y H +DA+ + D C + G C+ KC + HPP Sbjct: 188 CTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 476 Score = 34.7 bits (78), Expect = 0.20 Identities = 35/144 (24%), Positives = 47/144 (32%), Gaps = 26/144 (18%) Frame = +2 Query: 101 DCIYYLASPLTCNKGSECEYRHS-------------DAARVN-------PRDCWYWFNGN 220 DC+YYL + C G C Y H +AA ++ P +Y G Sbjct: 64 DCVYYLRTG-ACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGT 122 Query: 221 CA-NAKCSFRHPPLDDLLGXXXXXXXXXXXXXXXXXXXXXXXXNGTAKPV----VPC-YY 382 C C + HP D + N + P+ C YY Sbjct: 123 CKFGTNCKYHHPKQDGAV--------------------LPVMLNNSGFPIRLGEKECSYY 162 Query: 383 FQKGMCAKGNLCTFSHGPQFAGNP 454 + G C G C F H P+F G P Sbjct: 163 MKTGQCKFGTTCKFHH-PEFGGVP 185 Score = 30.4 bits (67), Expect = 3.8 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 17/67 (25%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRH--SDAA-------------RVNPRDCWYWF-NGNCA-NA 232 C YY+ + TC G+ C+Y H D A R+ ++C Y+ G C Sbjct: 114 CEYYMKTG-TCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGT 172 Query: 233 KCSFRHP 253 C F HP Sbjct: 173 TCKFHHP 179
>MKRN2_BRARE (Q9DFG8) Makorin-2| Length = 414 Score = 34.3 bits (77), Expect = 0.26 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 353 TAKPVVPCYYFQKGMCAKGNLCTFSH 430 T+KP C Y+Q+G CA G+ C + H Sbjct: 30 TSKPSTICKYYQRGACAYGDRCRYDH 55 Score = 30.4 bits (67), Expect = 3.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C +G+ C FSH Sbjct: 6 VTCRYFLHGVCREGSRCLFSH 26
>LEE1_YEAST (Q02799) Zinc finger protein LEE1| Length = 301 Score = 33.9 bits (76), Expect = 0.35 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSHGP 436 VPC +F+ G C G+ C FSH P Sbjct: 91 VPCKFFKMGNCQAGSSCPFSHSP 113 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Frame = +2 Query: 197 CWYWFNGNC-ANAKCSFRHPPLDDLLGXXXXXXXXXXXXXXXXXXXXXXXXNGTAKPVVP 373 C ++ GNC A + C F H P D++ +P Sbjct: 93 CKFFKMGNCQAGSSCPFSHSP--DIISSANN---------------------------LP 123 Query: 374 CYYFQKGMCAKGNLCTFSH 430 C YF KG C GN C +H Sbjct: 124 CKYFAKGNCKFGNKCVNAH 142
>MKRN2_MOUSE (Q9ERV1) Makorin-2| Length = 416 Score = 33.1 bits (74), Expect = 0.59 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%) Frame = +2 Query: 356 AKPVVPCYYFQKGMCAKGNLCTFSH--GPQFAG---NPALQLKNSNSWTKANNSPQQSTT 520 +KP C Y+QKG CA G C + H P AG PA S+ + SP +T+ Sbjct: 31 SKPSTICKYYQKGYCAYGARCRYDHTKPPAAAGGAVGPAPNPSPSSGLHSPHPSPDIATS 90 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCA-NAKCSFRH--PP 256 C Y++ C +GS+C + H A C Y+ G CA A+C + H PP Sbjct: 8 CRYFMHG--VCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPP 59 Score = 31.2 bits (69), Expect = 2.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C +G+ C FSH Sbjct: 6 VTCRYFMHGVCREGSQCLFSH 26
>MKRN2_HUMAN (Q9H000) Makorin-2 (RING finger protein 62)| Length = 416 Score = 33.1 bits (74), Expect = 0.59 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 356 AKPVVPCYYFQKGMCAKGNLCTFSH 430 +KP C Y+QKG CA G C + H Sbjct: 31 SKPSTICKYYQKGYCAYGTRCRYDH 55 Score = 30.8 bits (68), Expect = 2.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 + C YF G+C +G+ C FSH Sbjct: 6 ITCRYFMHGVCREGSQCLFSH 26 Score = 29.6 bits (65), Expect = 6.5 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCA-NAKCSFRH 250 C Y++ C +GS+C + H A C Y+ G CA +C + H Sbjct: 8 CRYFMHG--VCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
>MKRN1_MACEU (Q9TT91) Makorin-1| Length = 478 Score = 33.1 bits (74), Expect = 0.59 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C KGN C +SH Sbjct: 55 VTCRYFMHGVCKKGNNCRYSH 75 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCA-NAKCSFRH 250 C Y++ C KG+ C Y H + + C Y+ G CA +C + H Sbjct: 57 CRYFMHG--VCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEH 104 Score = 31.2 bits (69), Expect = 2.2 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 353 TAKPVVPCYYFQKGMCAKGNLCTFSH 430 T++ + C Y+Q+G CA G+ C + H Sbjct: 79 TSQSAMVCRYYQRGCCAYGDRCRYEH 104
>SCP3_SCHPO (P41000) Protein scp3| Length = 583 Score = 33.1 bits (74), Expect = 0.59 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSHGPQFA 445 VPC +F++G C G C FSH + A Sbjct: 39 VPCKFFRQGTCTSGKNCIFSHDLELA 64 Score = 30.4 bits (67), Expect = 3.8 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Frame = +2 Query: 131 TCNKGSECEYRHSDAARVNPRDCWYWFNGNCA-NAKCSFRH 250 TC G C + H C Y+ GNC +KC+ H Sbjct: 48 TCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEH 88
>ZC3H8_MOUSE (Q9JJ48) Zinc finger CCCH-type domain-containing protein 8 (Fetal| liver zinc finger protein 1) Length = 305 Score = 32.7 bits (73), Expect = 0.77 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 2/124 (1%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAK-CSFRHPPLDDLLGXX 280 C Y+L C KG +C++ H C Y+ G C + C + H Sbjct: 211 CKYFLERK--CIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLHSE-------- 260 Query: 281 XXXXXXXXXXXXXXXXXXXXXXNGTAKPVVPCYYFQKG-MCAKGNLCTFSHGPQFAGNPA 457 PC ++ G C +G+ C FSH P A Sbjct: 261 -----------------------------YPCKFYHTGTKCYQGDHCNFSHAPLTAETQE 291 Query: 458 LQLK 469 L K Sbjct: 292 LLAK 295
>ZFNL4_ARATH (Q94AD9) Zinc finger CCCH type domain-containing protein ZFN-like 4| Length = 404 Score = 32.3 bits (72), Expect = 1.0 Identities = 37/139 (26%), Positives = 45/139 (32%), Gaps = 29/139 (20%) Frame = +2 Query: 101 DCIYYLASPLTCNKGSECEYRH-----SDAA--------RVNPRDCWYWF-NGNCA-NAK 235 DC +YL + L C GS C Y H D A R+ DC Y+ G C Sbjct: 52 DCQFYLRTGL-CGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPT 110 Query: 236 CSFRHPPLDDLLGXXXXXXXXXXXXXXXXXXXXXXXXNGTAKPVV-------------PC 376 C + HP NG A+PV+ PC Sbjct: 111 CKYHHP----------------------------KDRNG-AQPVMFNVIGLPMRLGEKPC 141 Query: 377 -YYFQKGMCAKGNLCTFSH 430 YY + G C G C F H Sbjct: 142 PYYLRTGTCRFGVACKFHH 160
>ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing protein ZFN-like 3| Length = 466 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 16/68 (23%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAA--------------RVNPRDCWYWF-NGNCA-NAK 235 C YY+ + TC GS C+Y H R +DC Y+ G+C + Sbjct: 107 CEYYMKNG-TCKFGSNCKYDHPREGSVQAVMLNSSGYPLRSGEKDCTYYVKTGHCKFGST 165 Query: 236 CSFRHPPL 259 C F HP + Sbjct: 166 CKFHHPEI 173
>YQC1_SCHPO (O74463) Hypothetical protein C1739.01 in chromosome III| Length = 547 Score = 31.6 bits (70), Expect = 1.7 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 VPC +F+ G C G C FSH Sbjct: 45 VPCKFFRNGTCTAGENCPFSH 65
>TRM1_HUMAN (Q9NXH9) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 659 Score = 31.6 bits (70), Expect = 1.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 371 PCYYFQKGMCAKGNLCTFSHGP 436 PC F++G C +G+ C +SH P Sbjct: 605 PCKRFKEGTCQRGDQCCYSHSP 626
>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)| Length = 423 Score = 31.2 bits (69), Expect = 2.2 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 356 AKPVVPCYYFQKGMCAKGNLCTFSH 430 +KP C ++Q+G+CA G C + H Sbjct: 31 SKPSTICKFYQRGVCAYGERCRYDH 55 Score = 30.4 bits (67), Expect = 3.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C +G+ C FSH Sbjct: 6 VTCRYFLHGVCREGSRCLFSH 26
>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6| Length = 1177 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 2/111 (1%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAK-CSFRHPPLDDLLGXX 280 C Y+L C KG C++ H C Y+ G C + C + H Sbjct: 276 CKYFLEG--RCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEF------- 326 Query: 281 XXXXXXXXXXXXXXXXXXXXXXNGTAKPVVPCYYFQKG-MCAKGNLCTFSH 430 PC ++ G C +G+ C FSH Sbjct: 327 ------------------------------PCKFYHSGAKCYQGDKCKFSH 347
>ATS1_RAT (Q9WUQ1) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 1) (ADAM-TS 1) (ADAM-TS1) Length = 967 Score = 31.2 bits (69), Expect = 2.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 431 GPQFAGNPALQLKNSNSWTKANNSP 505 GP+ N AL L+N SW K +NSP Sbjct: 318 GPEVTSNAALTLRNFCSWQKQHNSP 342
>YLJ1_CAEEL (P34366) Hypothetical protein C50C3.1| Length = 469 Score = 30.8 bits (68), Expect = 2.9 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSD 172 C YY+ P C +G C ++H D Sbjct: 377 CTYYINRPDKCTRGDNCRFKHDD 399
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 30.8 bits (68), Expect = 2.9 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 15/50 (30%) Frame = +2 Query: 152 CEYRHS-------DAARVNPRDCWYW--------FNGNCANAKCSFRHPP 256 C+YRH+ + A DC + F NC N C FRHPP Sbjct: 426 CKYRHARSHIMCREGANCTRIDCLFGHPINEDCRFGVNCKNIYCLFRHPP 475
>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein| 63) Length = 507 Score = 30.0 bits (66), Expect = 5.0 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +2 Query: 374 CYYFQKGMCAKGNLCTFSHG 433 CYY +G+C +G C + HG Sbjct: 244 CYYASRGVCFRGESCMYLHG 263
>CWC2_SCHPO (P87126) Pre-mRNA-splicing factor cwc2 (Complexed with cdc5 protein| 2) (Pre-mRNA-processing protein 3) (Cell cycle control protein cwf2) Length = 388 Score = 30.0 bits (66), Expect = 5.0 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +2 Query: 374 CYYFQKGMCAKGNLCTFSH 430 C YF +GMC++G+ C + H Sbjct: 117 CLYFARGMCSEGSKCEYLH 135
>TRM1_MOUSE (Q3TX08) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 663 Score = 30.0 bits (66), Expect = 5.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 371 PCYYFQKGMCAKGNLCTFSHGP 436 PC F++G C G+ C +SH P Sbjct: 604 PCKRFKEGTCQLGDQCCYSHSP 625
>ZC3H8_HUMAN (Q8N5P1) Zinc finger CCCH-type domain-containing protein 8| Length = 291 Score = 30.0 bits (66), Expect = 5.0 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 2/113 (1%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANAK-CSFRHPPLDDLLGXX 280 C Y+L C KG +C++ H C ++ G C + C + H Sbjct: 197 CKYFLERK--CIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE-------- 246 Query: 281 XXXXXXXXXXXXXXXXXXXXXXNGTAKPVVPCYYFQKG-MCAKGNLCTFSHGP 436 PC ++ G C +G C FSH P Sbjct: 247 -----------------------------YPCKFYHTGTKCYQGEYCKFSHAP 270
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 30.0 bits (66), Expect = 5.0 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNCANA-KCSFRH 250 C ++L + C KG C +RH + C +W G C +C F H Sbjct: 41 CEFFLKA--ACGKGGMCPFRHISGEKTVV--CKHWLRGLCKKGDQCEFLH 86
>ATS1_MOUSE (P97857) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 1) (ADAM-TS 1) (ADAM-TS1) Length = 968 Score = 30.0 bits (66), Expect = 5.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 431 GPQFAGNPALQLKNSNSWTKANNSP 505 GP+ N AL L+N +W K +NSP Sbjct: 319 GPEVTSNAALTLRNFCNWQKQHNSP 343
>MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)| Length = 482 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSHGPQFAGNPALQLK-NSNSWTKANNSPQQSTTPVVHGELK 544 V C YFQ+G C G+ C + H A + + S A++S P+V E+ Sbjct: 88 VVCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLV--EMN 145 Query: 545 VGAQNGR 565 G R Sbjct: 146 TGEAESR 152 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C +G+ C +SH Sbjct: 59 VTCRYFMHGVCKEGDNCRYSH 79
>CWC2_YARLI (Q6C007) Pre-mRNA-splicing factor CWC2| Length = 382 Score = 29.6 bits (65), Expect = 6.5 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 Query: 374 CYYFQKGMCAKGNLCTFSH 430 C YF +G+C +G+ C F H Sbjct: 129 CLYFARGLCTQGHKCEFLH 147
>VMA2_TRTV (P33494) Matrix glycoprotein M2 (Envelope-associated 22 kDa| protein) Length = 186 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +2 Query: 371 PCYYFQKGMCAKGNLCTFSH 430 PC Y +G C +G+ CTF+H Sbjct: 6 PCRYEIRGKCNRGSSCTFNH 25
>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3| Length = 948 Score = 29.6 bits (65), Expect = 6.5 Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 3/112 (2%) Frame = +2 Query: 104 CIYYLASPLTCNKGSECEYRHSDAARVNPRDCWYWFNGNC--ANAKCSFRHPPLDDLLGX 277 C+YY CN+G C Y H D +V C + G C + C F H Sbjct: 673 CMYYNRFG-RCNRGERCPYIH-DPEKVAV--CTRFVRGTCKKTDGTCPFSHH-------- 720 Query: 278 XXXXXXXXXXXXXXXXXXXXXXXNGTAKPVVP-CYYFQKGMCAKGNLCTFSH 430 +K +P C YF KG+C+ N C +SH Sbjct: 721 -------------------------VSKEKMPVCSYFLKGICSNSN-CPYSH 746
>MKRN1_MOUSE (Q9QXP6) Makorin-1| Length = 481 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YFQ+G C G+ C + H Sbjct: 88 VVCKYFQRGYCVYGDRCRYEH 108 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF G+C +G+ C +SH Sbjct: 59 VTCRYFMHGVCKEGDNCRYSH 79
>MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING| finger protein 64) Length = 485 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +2 Query: 368 VPCYYFQKGMCAKGNLCTFSH 430 V C YF+ G+C +G+ C +SH Sbjct: 94 VTCRYFKYGICKEGDNCRYSH 114
>KACL2_SYNY3 (P74503) KaiC-like protein 2| Length = 505 Score = 29.6 bits (65), Expect = 6.5 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Frame = +2 Query: 350 GTAKPVVPCYYFQKGMCA--KGNLCTFSHGPQFA-------GNPALQLKNSNSWTKANNS 502 G+AK + + +G+ G TF P+ G Q +N W + S Sbjct: 40 GSAKTIFASQFLVEGIQRGENGVFVTFEEPPKALRKNMRGFGWDIQQWENEGKWVFVDAS 99 Query: 503 PQQSTTPVVHGELKVGA 553 PQ P+V GE +GA Sbjct: 100 PQPGDRPIVSGEYDLGA 116
>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/NT Length = 3010 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 113 YLASPLTCNKGSECEYRHSDAARVNPRDC 199 Y+ PLT ++G C YR A+RV C Sbjct: 2680 YVGGPLTNSRGENCGYRRCRASRVLTTSC 2708
>ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain protein| Length = 511 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 353 TAKPVVPCYYFQKGMCAKGNLCTFSHG 433 T K + PC +F +G C C FSHG Sbjct: 172 THKSLKPCPFFLEGKCRFKENCRFSHG 198
>YTH1_YEAST (Q06102) Protein YTH1| Length = 208 Score = 29.3 bits (64), Expect = 8.5 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = +2 Query: 134 CNKGSECEYRHSDAARVNPRDCWYWFNGNCANA-KCSFRH 250 C K +CEY H R P ++ NG C + C + H Sbjct: 75 CKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLH 114
>ZC3H6_HUMAN (P61129) Zinc finger CCCH-type domain-containing protein 6| Length = 1189 Score = 29.3 bits (64), Expect = 8.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 374 CYYFQKGMCAKGNLCTFSH 430 C YF +G C KG+ C F H Sbjct: 278 CKYFLEGRCIKGDQCKFDH 296
>ZGPAT_HUMAN (Q8N5A5) Zinc finger CCCH-type with G patch domain protein (Zinc| finger CCCH-type domain-containing protein 9) Length = 531 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 353 TAKPVVPCYYFQKGMCAKGNLCTFSHG 433 T K + PC +F +G C C FSHG Sbjct: 173 THKSLKPCPFFLEGKCRFKENCRFSHG 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,387,192 Number of Sequences: 219361 Number of extensions: 1154025 Number of successful extensions: 3779 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 3461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3772 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
