ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart11c05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 155 gagtaccgtcacagcgacgctgccagggtgaatcccagggactgctggtattggttcaac 214 ||||||||||| || || ||||||||| ||||||| ||||| ||||||||||||||||| Sbjct: 35758630 gagtaccgtcatagtgatgctgccaggatgaatcctagggattgctggtattggttcaat 35758689 Query: 215 ggcaactgcgcgaatgctaaatgttcattcaggcacccg 253 ||||||||||| ||| ||||||| ||||||||||||||| Sbjct: 35758690 ggcaactgcgctaatcctaaatgctcattcaggcacccg 35758728 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 83 cgccgccgccggggcaccgactgcatctactacctcgcatccccgttgacctgcaacaag 142 |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 35757623 cgccgccgccggagcaccgactgcatctacttcctcgcctccccgttgacctgcaagaag 35757682 Query: 143 g 143 | Sbjct: 35757683 g 35757683 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 297 ctcaacaacctgcgccgcaggttcctgtgcctgctaaagc 336 |||||||| |||| || |||||| ||||||||||| |||| Sbjct: 35759002 ctcaacaatctgcaccacaggtttctgtgcctgctcaagc 35759041 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgaggaggaggcgcgccgcc 89 |||||||||||||||||||| Sbjct: 4774806 cgaggaggaggcgcgccgcc 4774825 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gaggaggaggcgcgccgccg 90 |||||||||||||||||||| Sbjct: 619349 gaggaggaggcgcgccgccg 619330
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 155 gagtaccgtcacagcgacgctgccagggtgaatcccagggactgctggtattggttcaac 214 ||||||||||| || || ||||||||| ||||||| ||||| ||||||||||||||||| Sbjct: 29345 gagtaccgtcatagtgatgctgccaggatgaatcctagggattgctggtattggttcaat 29404 Query: 215 ggcaactgcgcgaatgctaaatgttcattcaggcacccg 253 ||||||||||| ||| ||||||| ||||||||||||||| Sbjct: 29405 ggcaactgcgctaatcctaaatgctcattcaggcacccg 29443 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 83 cgccgccgccggggcaccgactgcatctactacctcgcatccccgttgacctgcaacaag 142 |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 28338 cgccgccgccggagcaccgactgcatctacttcctcgcctccccgttgacctgcaagaag 28397 Query: 143 g 143 | Sbjct: 28398 g 28398 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 297 ctcaacaacctgcgccgcaggttcctgtgcctgctaaagc 336 |||||||| |||| || |||||| ||||||||||| |||| Sbjct: 29717 ctcaacaatctgcaccacaggtttctgtgcctgctcaagc 29756
>ref|XM_468541.1| Oryza sativa (japonica cultivar-group), mRNA Length = 243 Score = 89.7 bits (45), Expect = 9e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 83 cgccgccgccggggcaccgactgcatctactacctcgcatccccgttgacctgcaacaag 142 |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 111 cgccgccgccggagcaccgactgcatctacttcctcgcctccccgttgacctgcaagaag 52 Query: 143 g 143 | Sbjct: 51 g 51
>dbj|AK102679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102J01, full insert sequence Length = 1791 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 97 caccgactgcatctactacctcgcatccccgttgacctgcaacaaggggagcgagtgcga 156 |||||||||| |||||| |||||| ||||| || ||||||| ||||||| | ||||||| Sbjct: 144 caccgactgcgtctacttcctcgcctcccccttcacctgcaccaaggggtccaagtgcga 203 Query: 157 gtaccg 162 |||||| Sbjct: 204 gtaccg 209
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 cgaggaggaggcgcgccgccgc 91 |||||||||||||||||||||| Sbjct: 102279 cgaggaggaggcgcgccgccgc 102300
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 cgaggaggaggcgcgccgccgc 91 |||||||||||||||||||||| Sbjct: 841816 cgaggaggaggcgcgccgccgc 841795
>gb|BC052252.1| Homo sapiens exosome component 6, mRNA (cDNA clone MGC:59978 IMAGE:6256140), complete cds Length = 1729 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cggccgacgaggaggaggcgc 83 ||||||||||||||||||||| Sbjct: 92 cggccgacgaggaggaggcgc 112
>ref|XM_475421.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 570 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 79 ggaggcgcgccgccgccgggg 99
>ref|NM_192722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2874 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 2432 ggaggcgcgccgccgccgggg 2452
>ref|NM_058219.2| Homo sapiens exosome component 6 (EXOSC6), mRNA Length = 1729 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cggccgacgaggaggaggcgc 83 ||||||||||||||||||||| Sbjct: 92 cggccgacgaggaggaggcgc 112
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gctggtattggttcaacggca 218 ||||||||||||||||||||| Sbjct: 1253896 gctggtattggttcaacggca 1253916
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 52050 ggaggcgcgccgccgccgggg 52070
>gb|BC039194.1| Homo sapiens cDNA clone IMAGE:4281687, with apparent retained intron Length = 1421 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cggccgacgaggaggaggcgc 83 ||||||||||||||||||||| Sbjct: 107 cggccgacgaggaggaggcgc 127
>emb|AL589864.14| Human DNA sequence from clone RP13-63P20 on chromosome 10, complete sequence Length = 80842 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 ccctgctttgcagctgaagaa 471 ||||||||||||||||||||| Sbjct: 13839 ccctgctttgcagctgaagaa 13819
>emb|AL136964.8| Human DNA sequence from clone RP11-346C4 on chromosome 13 Contains the 5' end of a novel gene, a novel gene and 2 CpG islands,, complete sequence Length = 171991 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 gcgccgccgccggggcaccgactgc 106 |||||||||||||||| |||||||| Sbjct: 154032 gcgccgccgccggggctccgactgc 154056
>gb|AY665911.1| Physalis virginiana isolate PVIRG36 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 627 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccggccgacgaggaggaggcgcg 84 ||||||||||||||| ||||||||| Sbjct: 98 cgccggccgacgagggggaggcgcg 74
>gb|AY665910.1| Physalis virginiana isolate PVIRG 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 627 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccggccgacgaggaggaggcgcg 84 ||||||||||||||| ||||||||| Sbjct: 98 cgccggccgacgagggggaggcgcg 74
>gb|AY665907.1| Physalis heterophylla isolate PHET 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 627 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 60 cgccggccgacgaggaggaggcgcg 84 ||||||||||||||| ||||||||| Sbjct: 98 cgccggccgacgagggggaggcgcg 74
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 gccgctggacgacctgctcgg 273 ||||||||||||||||||||| Sbjct: 2997582 gccgctggacgacctgctcgg 2997562
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 ggcgagcttaaagtcggtgct 553 ||||||||||||||||||||| Sbjct: 1009068 ggcgagcttaaagtcggtgct 1009048
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 23366514 ggaggcgcgccgccgccgggg 23366534
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 24038004 ggaggcgcgccgccgccgggg 24038024
>gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448G15, complete sequence Length = 199450 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 atgtgtgcaaaaggaaacctc 415 ||||||||||||||||||||| Sbjct: 81046 atgtgtgcaaaaggaaacctc 81026
>gb|AC108199.5| Homo sapiens BAC clone RP13-560N11 from 4, complete sequence Length = 91042 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 atgtgtgcaaaaggaaacctc 415 ||||||||||||||||||||| Sbjct: 83556 atgtgtgcaaaaggaaacctc 83536
>gb|AC093491.3| Homo sapiens chromosome 16 clone RP11-410N2, complete sequence Length = 162176 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cggccgacgaggaggaggcgc 83 ||||||||||||||||||||| Sbjct: 160361 cggccgacgaggaggaggcgc 160381
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 13826 ggaggcgcgccgccgccgggg 13846
>gb|AC146357.3| Otolemur garnettii clone CH256-396G19, complete sequence Length = 181866 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gctggtattggttcaacggca 218 ||||||||||||||||||||| Sbjct: 147845 gctggtattggttcaacggca 147865
>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence Length = 180596 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cggccgacgaggaggaggcgc 83 ||||||||||||||||||||| Sbjct: 153116 cggccgacgaggaggaggcgc 153096
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 152526 ggaggcgcgccgccgccgggg 152546
>dbj|AK111029.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H07, full insert sequence Length = 888 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 129 ggaggcgcgccgccgccgggg 149
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 ggaggcgcgccgccgccgggg 96 ||||||||||||||||||||| Sbjct: 306616 ggaggcgcgccgccgccgggg 306596
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 gccgctggacgacctgctcgg 273 ||||||||||||||||||||| Sbjct: 3722709 gccgctggacgacctgctcgg 3722689 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 gccgctggacgacctgctcgg 273 ||||||||||||||||||||| Sbjct: 3013045 gccgctggacgacctgctcgg 3013025
>ref|NM_187576.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 505 gcgccggccgacgaggagga 524
>gb|AC111130.17| Mus musculus chromosome 5, clone RP23-339G19, complete sequence Length = 212923 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 aaaggaaacctctgcacatt 423 |||||||||||||||||||| Sbjct: 153666 aaaggaaacctctgcacatt 153647
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ctcgacctcgcggcgatgga 21 |||||||||||||||||||| Sbjct: 501647 ctcgacctcgcggcgatgga 501666
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaggaggcgcgccgccgccg 93 |||||||||||||||||||| Sbjct: 1899135 gaggaggcgcgccgccgccg 1899116
>gb|AY289797.1| Chlamydomonas reinhardtii GlsA-related protein gene, complete cds Length = 8177 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aggaggaggcgcgccgccgc 91 |||||||||||||||||||| Sbjct: 4238 aggaggaggcgcgccgccgc 4257
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 1174939 gcgccggccgacgaggagga 1174958
>gb|AY224519.1| Oryza sativa (japonica cultivar-group) isolate 20527 putative nascent polypeptide-associated complex alpha chain mRNA, complete cds Length = 666 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 505 gcgccggccgacgaggagga 524
>ref|XM_849493.1| PREDICTED: Canis familiaris similar to G1/S-specific cyclin D2 (LOC611782), mRNA Length = 1162 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 tacatggcgagcttaaagtcggtg 551 |||||||||| ||||||||||||| Sbjct: 865 tacatggcgaacttaaagtcggtg 842
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 ccaggcgacgcacgcgccggccga 69 ||||||||||||||||||| |||| Sbjct: 2271437 ccaggcgacgcacgcgccgtccga 2271460
>emb|AL135839.15| Human DNA sequence from clone RP1-188K17 on chromosome 6q22.22-23.3 Contains the part of the SGK gene for serum/glucocorticoid regulated kinase and a CpG island, complete sequence Length = 113673 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 tgctaaatgttcattcaggc 248 |||||||||||||||||||| Sbjct: 38101 tgctaaatgttcattcaggc 38082
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 51 cgacgcacgcgccggccgacgaggaggaggcg 82 ||||||||||||||| |||||| |||||||| Sbjct: 249919 cgacgcacgcgccggacgacgaccaggaggcg 249950
>gb|AY665891.1| Physalis caudella isolate PCAUD 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 632 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 cgccggccgacgaggaggaggcgcgccg 87 ||||||||||||||| ||||||| |||| Sbjct: 104 cgccggccgacgagggggaggcgagccg 77
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 78643 gcgccggccgacgaggagga 78662
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 aaacctctgcacattctcac 428 |||||||||||||||||||| Sbjct: 79614 aaacctctgcacattctcac 79595
>gb|AC090239.6| Homo sapiens chromosome 18, clone RP11-746A20, complete sequence Length = 184635 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aggttcctgtgcctgctaaa 334 |||||||||||||||||||| Sbjct: 1841 aggttcctgtgcctgctaaa 1822
>gb|AC087683.5| Homo sapiens chromosome 18, clone RP11-687E1, complete sequence Length = 181036 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aggttcctgtgcctgctaaa 334 |||||||||||||||||||| Sbjct: 83399 aggttcctgtgcctgctaaa 83418
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ccgacgaggaggaggcgcgccgcc 89 |||||||||||||||||| ||||| Sbjct: 2070668 ccgacgaggaggaggcgccccgcc 2070645
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 1174937 gcgccggccgacgaggagga 1174956
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 gccgccggggcaccgactgcatct 110 ||||||||||||||||| |||||| Sbjct: 6979 gccgccggggcaccgaccgcatct 6956
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aggaggcgcgccgccgccgg 94 |||||||||||||||||||| Sbjct: 7063285 aggaggcgcgccgccgccgg 7063266
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gaggaggaggcgcgccgccg 90 |||||||||||||||||||| Sbjct: 97402 gaggaggaggcgcgccgccg 97383
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgaggaggaggcgcgccgcc 89 |||||||||||||||||||| Sbjct: 55396 cgaggaggaggcgcgccgcc 55415
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgaggaggaggcgcgccgcc 89 |||||||||||||||||||| Sbjct: 16965 cgaggaggaggcgcgccgcc 16984
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 aaacctctgcacattctcac 428 |||||||||||||||||||| Sbjct: 63561 aaacctctgcacattctcac 63580
>dbj|AK099300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142E05, full insert sequence Length = 954 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 557 gcgccggccgacgaggagga 576
>dbj|AK059982.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E10, full insert sequence Length = 1062 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcgccggccgacgaggagga 78 |||||||||||||||||||| Sbjct: 572 gcgccggccgacgaggagga 591 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,043,474 Number of Sequences: 3902068 Number of extensions: 4043474 Number of successful extensions: 80018 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78442 Number of HSP's gapped (non-prelim): 1576 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
