>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 1/125 (0%)
 Frame = +2

Query: 176 PRVVIGPDENGFKKTIEYRFDDDGNXXXXXXXXXXXXXXXXXXXXXXXERRSWGKFXXXX 355
           P +    + +G K  IE+R DD+G                        ER+ W KF    
Sbjct: 20  PSIQTFDNPDGTKTMIEFRIDDNGK-KVKVTRVIRKTVITERVQHAVAERKKWKKFGKEA 78

Query: 356 XXXXXXXRLTVVSTEEILLERPRA-PGSKADEPSASGDPLAMASKGGAVLMVCRTCGKKG 532
                    T    E + L        +K +E   +    A     G+ ++ CR C  KG
Sbjct: 79  GKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKGSSVVRCRAC--KG 136

Query: 533 DHWTS 547
           +H+T+
Sbjct: 137 NHFTA 141

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
 Frame = +2

Query: 173 PPRVVIGPDENGFKKTI-EYRFDDDGNXXXXXXXXXXXXXXXXXXXXXXXERRSWGKFXX 349
           PP+ VI    NG  KT+ EY+ D+DG                         R++W KF  
Sbjct: 55  PPKEVI----NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVA---RRKNWKKFGN 107

Query: 350 XXXXXXXXXRLTVVSTEEILLERPRAPGSKAD-EPSASGDPLAMASKGGAVLMVCRTCGK 526
                      T   ++++ +       SK D       DP  M    G  ++ CR C  
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFIT---SKEDLNCQEEEDP--MNKLKGQKIVSCRIC-- 160

Query: 527 KGDHWTS 547
           KGDHWT+
Sbjct: 161 KGDHWTT 167

>ODO2_BARVB (Q8GCY1) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
           (E2) (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 411

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 510 QTMRTAPPLLAIASGSPEALGSSALLPGARGRSRRISSV---ETTVRRAEASSPLAA 349
           Q ++T+PP ++ +S +P ++ SSA+ P    R  R+      +T  RR + +   AA
Sbjct: 150 QGVKTSPPAVSASSSTPVSVSSSAVAPVQEMREERVRMTKLRQTIARRLKDAQNTAA 206

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
 Frame = +2

Query: 173 PPRVVIGPDENGFKKTI-EYRFDDDGNXXXXXXXXXXXXXXXXXXXXXXXERRSWGKFXX 349
           PP+ VI    NG  KT+ EY+ ++DG                         R++W KF  
Sbjct: 55  PPKEVI----NGNIKTVTEYKIEEDGKKFKIVRTFRIETRKASKAVA---RRKNWKKFGN 107

Query: 350 XXXXXXXXXRLTVVSTEEILLERPRAPGSKAD-EPSASGDPLAMASKGGAVLMVCRTCGK 526
                      T   ++++ +       SK D       DP  M    G  ++ CR C  
Sbjct: 108 SEFDPPGPNVATTTVSDDVSMTFIT---SKEDLNCQEEEDP--MNKLKGQKIVSCRIC-- 160

Query: 527 KGDHWTS 547
           KGDHWT+
Sbjct: 161 KGDHWTT 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,369,214
Number of Sequences: 219361
Number of extensions: 506488
Number of successful extensions: 2012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2011
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)