ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart11b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.1
2dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.1
3gb|AF449192.1| Macroptilium mosaic Puerto Rico virus-[Bean] segm... 36 8.2
4emb|X79075.1|CBPUTOPP C.burnetii phosphomannomutase, dUTPase and... 36 8.2
5gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 36 8.2
6emb|AJ250026.1|VFA250026 Vicia faba mRNA for S-adenosylmethionin... 36 8.2
7gb|AY044133.1| Macroptilium mosaic Puerto Rico virus segment A, ... 36 8.2

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 4       ccgcgctttcccttccttc 22
               |||||||||||||||||||
Sbjct: 8128455 ccgcgctttcccttccttc 8128473



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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      ccgcgctttcccttccttc 22
              |||||||||||||||||||
Sbjct: 116648 ccgcgctttcccttccttc 116666



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>gb|AF449192.1| Macroptilium mosaic Puerto Rico virus-[Bean] segment A, complete
          sequence
          Length = 2615

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 4  ccgcgctttcccttcctt 21
          ||||||||||||||||||
Sbjct: 10 ccgcgctttcccttcctt 27



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>emb|X79075.1|CBPUTOPP C.burnetii phosphomannomutase, dUTPase and orotate phosphoribosyl
            transferase genes
          Length = 5294

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 34   agcgagcgagcgcgggaa 51
            ||||||||||||||||||
Sbjct: 5063 agcgagcgagcgcgggaa 5080



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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     agcgagcgagcgcgggaa 51
              ||||||||||||||||||
Sbjct: 259480 agcgagcgagcgcgggaa 259463



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>emb|AJ250026.1|VFA250026 Vicia faba mRNA for S-adenosylmethionine decarboxylase (samdc gene)
          Length = 1795

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 2   ctccgcgctttcccttcc 19
           ||||||||||||||||||
Sbjct: 90  ctccgcgctttcccttcc 107



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>gb|AY044133.1| Macroptilium mosaic Puerto Rico virus segment A, complete
          sequence
          Length = 2615

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 4  ccgcgctttcccttcctt 21
          ||||||||||||||||||
Sbjct: 10 ccgcgctttcccttcctt 27


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 321,030
Number of Sequences: 3902068
Number of extensions: 321030
Number of successful extensions: 24379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24359
Number of HSP's gapped (non-prelim): 20
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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