ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart11a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group... 105 2e-19
2ref|XM_467513.1| Oryza sativa (japonica cultivar-group), mRNA 105 2e-19
3ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group... 105 2e-19
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
7dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
8dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
9ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predic... 92 2e-15
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
11dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
13dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
14ref|XM_467512.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
15gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.13
16gb|BC037460.1| Mus musculus disrupted in renal carcinoma 2 (huma... 42 2.0
17gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, comp... 42 2.0
18dbj|AK172331.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 2.0
19dbj|AK034214.1| Mus musculus adult male diencephalon cDNA, RIKEN... 42 2.0
20emb|CR378099.1| Pinus pinaster SSR, clone PPB2F11 42 2.0
21emb|CR378086.1| Pinus pinaster SSR, clone PPB2D04 42 2.0
22gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 42 2.0
23ref|NM_153550.2| Mus musculus disrupted in renal carcinoma 2 (hu... 42 2.0
24ref|NM_053245.1| Mus musculus aryl hydrocarbon receptor-interact... 40 7.8
25gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.8
26ref|NM_000748.1| Homo sapiens cholinergic receptor, nicotinic, b... 40 7.8
27gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 40 7.8
28gb|BC028285.1| Mus musculus aryl hydrocarbon receptor-interactin... 40 7.8
29emb|AL592078.10| Human DNA sequence from clone RP11-61L14 on chr... 40 7.8
30emb|X53179.1|HSHACHRB2 Human mRNA for neuronal nicotinic acetylc... 40 7.8
31emb|BX321917.4| Mouse DNA sequence from clone RP23-401C17 on chr... 40 7.8
32gb|AF077186.2| Homo sapiens neuronal nicotinic acetylcholine rec... 40 7.8
33emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in... 40 7.8
34gb|AE005888.1| Caulobacter crescentus CB15 section 214 of 359 of... 40 7.8
35gb|AF296412.1|AF296412 Mus musculus aryl-hydrocarbon interacting... 40 7.8
36dbj|AK020825.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 7.8
37gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Canc... 40 7.8
38gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome... 40 7.8
39gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.8
40ref|XM_215469.3| PREDICTED: Rattus norvegicus microtubule-associ... 40 7.8
41dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.8
42emb|X60370.1|RRMAP1B5 R.norvegicus mRNA for microtubule associat... 40 7.8
43emb|AJ001935.1|HSAJ1935 Homo sapiens CHRNB2 gene, exon 1 (and jo... 40 7.8
44gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.8
45gb|AC164438.3| Mus musculus BAC clone RP23-62L19 from chromosome... 40 7.8
46emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chro... 40 7.8
47gb|U62437.1|HSU62437 Human nicotinic acetylcholine receptor beta... 40 7.8 
>ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA
          Length = 1716

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Minus

                                                                        
Query: 378  gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
            ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 1337 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 1278

                                                                        
Query: 438  ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
            ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 1277 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 1218

                     
Query: 498  cactgcaac 506
            || ||||||
Sbjct: 1217 cagtgcaac 1209



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                        
Query: 162  gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 221
            ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 1568 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 1509

                                        
Query: 222  aaccacaggcatggcccgtgctcgccgg 249
            |||||| |||| || || ||||||||||
Sbjct: 1508 aaccaccggcacgggccatgctcgccgg 1481
to top
>ref|XM_467513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                       
Query: 378 gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
           ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 380 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 439

                                                                       
Query: 438 ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
           ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 440 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 499

                    
Query: 498 cactgcaac 506
           || ||||||
Sbjct: 500 cagtgcaac 508



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 221
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 149 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 208

                                       
Query: 222 aaccacaggcatggcccgtgctcgccgg 249
           |||||| |||| || || ||||||||||
Sbjct: 209 aaccaccggcacgggccatgctcgccgg 236
to top
>ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19
           mRNA
          Length = 1737

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                       
Query: 378 gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
           ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 386 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 445

                                                                       
Query: 438 ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
           ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 446 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 505

                    
Query: 498 cactgcaac 506
           || ||||||
Sbjct: 506 cagtgcaac 514



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 221
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 155 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 214

                                       
Query: 222 aaccacaggcatggcccgtgctcgccgg 249
           |||||| |||| || || ||||||||||
Sbjct: 215 aaccaccggcacgggccatgctcgccgg 242
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Minus

                                                                            
Query: 378      gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
                ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 29912332 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 29912273

                                                                            
Query: 438      ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
                ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 29912272 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 29912213

                         
Query: 498      cactgcaac 506
                || ||||||
Sbjct: 29912212 cagtgcaac 29912204



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                            
Query: 190      cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 249
                |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 29912535 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 29912476



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 471      gacaccgggagcgacgtgtcgtggttgcactgcaa 505
                |||||||| ||||||||||||||| |||| |||||
Sbjct: 29908330 gacaccggcagcgacgtgtcgtgggtgcagtgcaa 29908364
to top
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0654B04
          Length = 156907

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
             ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 12608 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 12549

                                                                         
Query: 438   ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
             ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 12548 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 12489

                      
Query: 498   cactgcaac 506
             || ||||||
Sbjct: 12488 cagtgcaac 12480



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 190   cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 249
             |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 12811 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 12752



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 471  gacaccgggagcgacgtgtcgtggttgcactgcaa 505
            |||||||| ||||||||||||||| |||| |||||
Sbjct: 8606 gacaccggcagcgacgtgtcgtgggtgcagtgcaa 8640
to top
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_D06
          Length = 112768

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
             ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 69297 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 69238

                                                                         
Query: 438   ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
             ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 69237 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 69178

                      
Query: 498   cactgcaac 506
             || ||||||
Sbjct: 69177 cagtgcaac 69169



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                         
Query: 190   cgtcgtcgtccagtggagccacggtgccgttgaaccacaggcatggcccgtgctcgccgg 249
             |||||||||  |||||| |||||||| ||||||||||| |||| || || ||||||||||
Sbjct: 69500 cgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccgg 69441



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 471   gacaccgggagcgacgtgtcgtggttgcactgcaa 505
             |||||||| ||||||||||||||| |||| |||||
Sbjct: 65295 gacaccggcagcgacgtgtcgtgggtgcagtgcaa 65329
to top
>dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G11, full
           insert sequence
          Length = 1716

 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                       
Query: 378 gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
           ||||||||| ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 380 gtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 439

                                                                       
Query: 438 ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
           ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 440 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 499

                    
Query: 498 cactgcaac 506
           || ||||||
Sbjct: 500 cagtgcaac 508



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 221
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 149 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 208

                                       
Query: 222 aaccacaggcatggcccgtgctcgccgg 249
           |||||| |||| || || ||||||||||
Sbjct: 209 aaccaccggcacgggccatgctcgccgg 236
to top
>dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full
           insert sequence
          Length = 1736

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 109/129 (84%)
 Strand = Plus / Plus

                                                                       
Query: 378 gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
           |||||| || ||||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 385 gtgccgcccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 444

                                                                       
Query: 438 ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
           ||| ||||||| |||  |||||   |||||||||||||||| ||||||||||||||| ||
Sbjct: 445 ggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtg 504

                    
Query: 498 cactgcaac 506
           || ||||||
Sbjct: 505 cagtgcaac 513



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 162 gccgtctgctccgagcccaaagggatcccgtcgtcgtccagtggagccacggtgccgttg 221
           ||||||||||||||||  || | |||  |||||||||  |||||| |||||||| |||||
Sbjct: 154 gccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttg 213

                                       
Query: 222 aaccacaggcatggcccgtgctcgccgg 249
           |||||| |||| || || ||||||||||
Sbjct: 214 aaccaccggcacgggccatgctcgccgg 241
to top
>ref|NM_192718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                       
Query: 378 gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
           |||||||||  |||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 337 gtgccgaccacgctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 396

                                                                       
Query: 438 ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
           |||||||||||||||  |||||   ||  |||||||||||| ||||||||||||||| ||
Sbjct: 397 ggctcgccggcggtgacgcagagggtggtcatcgacaccggcagcgacgtgtcgtgggtg 456

             
Query: 498 ca 499
           ||
Sbjct: 457 ca 458



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 275 cgaggagcggctccgccgtgacacgctccgagccggctacgtccagcggaagttctcc 332
           |||||||| |||||||||||||  ||||||||| | |||| |||  || |||||||||
Sbjct: 228 cgaggagctgctccgccgtgaccagctccgagctgactacatccgacgcaagttctcc 285
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                            
Query: 378      gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
                |||||||||  |||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 24014976 gtgccgaccacgctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 24015035

                                                                            
Query: 438      ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
                |||||||||||||||  |||||   ||  |||||||||||| ||||||||||||||| ||
Sbjct: 24015036 ggctcgccggcggtgacgcagagggtggtcatcgacaccggcagcgacgtgtcgtgggtg 24015095

                  
Query: 498      ca 499
                ||
Sbjct: 24015096 ca 24015097



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                          
Query: 275      cgaggagcggctccgccgtgacacgctccgagccggctacgtccagcggaagttctcc 332
                |||||||| |||||||||||||  ||||||||| | |||| |||  || |||||||||
Sbjct: 24014867 cgaggagctgctccgccgtgaccagctccgagctgactacatccgacgcaagttctcc 24014924
to top
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0090K04
          Length = 152556

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                          
Query: 378    gtgccgaccgagctgggttctccccaggacacgctggagtacgtcataaccgtcggcgtc 437
              |||||||||  |||||| ||  ||| |||||||||||||||||||||  |||||||  ||
Sbjct: 129498 gtgccgaccacgctgggctcctccctggacacgctggagtacgtcatctccgtcgggctc 129557

                                                                          
Query: 438    ggctcgccggcggtgcagcagatcatgaccatcgacaccgggagcgacgtgtcgtggttg 497
              |||||||||||||||  |||||   ||  |||||||||||| ||||||||||||||| ||
Sbjct: 129558 ggctcgccggcggtgacgcagagggtggtcatcgacaccggcagcgacgtgtcgtgggtg 129617

                
Query: 498    ca 499
              ||
Sbjct: 129618 ca 129619



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                        
Query: 275    cgaggagcggctccgccgtgacacgctccgagccggctacgtccagcggaagttctcc 332
              |||||||| |||||||||||||  ||||||||| | |||| |||  || |||||||||
Sbjct: 129389 cgaggagctgctccgccgtgaccagctccgagctgactacatccgacgcaagttctcc 129446
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                            
Query: 409      cgctggagtacgtcataaccgtcggcgtcggctcgccggcggtgcagcagatcatgacca 468
                |||||||||||||| | ||  ||||| ||||| ||||||| || ||||||| | |   ||
Sbjct: 11426126 cgctggagtacgtcgtcacgctcggcatcggcacgccggccgtccagcagaccgtcctca 11426185

                                                     
Query: 469      tcgacaccgggagcgacgtgtcgtggttgcactgcaa 505
                |||||||||| |||||| |||||||| |||| |||||
Sbjct: 11426186 tcgacaccggcagcgacctgtcgtgggtgcagtgcaa 11426222



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 405      gacacgctggagtacgtcataaccgtcggcgtcggctcgccggcg 449
                ||||||||||||| |||| |  |||||||| ||||| ||||||||
Sbjct: 11398616 gacacgctggagttcgtcgtcgccgtcggcctcggcacgccggcg 11398660
to top
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1386G10
          Length = 121827

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                          
Query: 409    cgctggagtacgtcataaccgtcggcgtcggctcgccggcggtgcagcagatcatgacca 468
              |||||||||||||| | ||  ||||| ||||| ||||||| || ||||||| | |   ||
Sbjct: 113835 cgctggagtacgtcgtcacgctcggcatcggcacgccggccgtccagcagaccgtcctca 113894

                                                   
Query: 469    tcgacaccgggagcgacgtgtcgtggttgcactgcaa 505
              |||||||||| |||||| |||||||| |||| |||||
Sbjct: 113895 tcgacaccggcagcgacctgtcgtgggtgcagtgcaa 113931



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 405   gacacgctggagtacgtcataaccgtcggcgtcggctcgccggcg 449
             ||||||||||||| |||| |  |||||||| ||||| ||||||||
Sbjct: 86325 gacacgctggagttcgtcgtcgccgtcggcctcggcacgccggcg 86369
to top
>ref|XM_467512.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1428

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 471 gacaccgggagcgacgtgtcgtggttgcactgcaa 505
           |||||||| ||||||||||||||| |||| |||||
Sbjct: 478 gacaccggcagcgacgtgtcgtgggtgcagtgcaa 512
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 428     cgtcggcgtcggctcgccggcggtgcagcag 458
               |||||||||||||| ||||||| ||||||||
Sbjct: 5124998 cgtcggcgtcggcttgccggcgctgcagcag 5124968
to top
>gb|BC037460.1| Mus musculus disrupted in renal carcinoma 2 (human), mRNA (cDNA
           clone MGC:47126 IMAGE:4190539), complete cds
          Length = 2073

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  gcggctgccgctcctcctcct 73
           |||||||||||||||||||||
Sbjct: 132 gcggctgccgctcctcctcct 112
to top
>gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, complete sequence
          Length = 214649

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     gcggctgccgctcctcctcct 73
              |||||||||||||||||||||
Sbjct: 161031 gcggctgccgctcctcctcct 161011
to top
>dbj|AK172331.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830201N18 product:disrupted in renal
           carcinoma 2 (human), full insert sequence
          Length = 2090

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  gcggctgccgctcctcctcct 73
           |||||||||||||||||||||
Sbjct: 173 gcggctgccgctcctcctcct 153
to top
>dbj|AK034214.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length
           enriched library, clone:9330164E21 product:hypothetical
           Trypsin-like serine proteases structure containing
           protein, full insert sequence
          Length = 4555

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  gcggctgccgctcctcctcct 73
           |||||||||||||||||||||
Sbjct: 158 gcggctgccgctcctcctcct 138
to top
>emb|CR378099.1| Pinus pinaster SSR, clone PPB2F11
          Length = 647

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 13  gggagagtgagcaaggaggag 33
           |||||||||||||||||||||
Sbjct: 80  gggagagtgagcaaggaggag 100
to top
>emb|CR378086.1| Pinus pinaster SSR, clone PPB2D04
          Length = 654

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 13  gggagagtgagcaaggaggag 33
           |||||||||||||||||||||
Sbjct: 91  gggagagtgagcaaggaggag 111
to top
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 49     tctcgcggctgccgctcctcctcct 73
              ||||||||| |||||||||||||||
Sbjct: 122605 tctcgcggccgccgctcctcctcct 122581



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 49   tctcgcggctgccgctcctcctcct 73
            ||||||||| |||||||||||||||
Sbjct: 4412 tctcgcggccgccgctcctcctcct 4436
to top
>ref|NM_153550.2| Mus musculus disrupted in renal carcinoma 2 (human) (Dirc2), mRNA
          Length = 4555

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  gcggctgccgctcctcctcct 73
           |||||||||||||||||||||
Sbjct: 158 gcggctgccgctcctcctcct 138
to top
>ref|NM_053245.1| Mus musculus aryl hydrocarbon receptor-interacting protein-like 1
           (Aipl1), mRNA
          Length = 1075

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gctgccgctcctcctcctgt 75
           ||||||||||||||||||||
Sbjct: 964 gctgccgctcctcctcctgt 945
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     tcaaggtgccgaccgagctg 392
               ||||||||||||||||||||
Sbjct: 5242516 tcaaggtgccgaccgagctg 5242497
to top
>ref|NM_000748.1| Homo sapiens cholinergic receptor, nicotinic, beta 2 (neuronal)
           (CHRNB2), mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccaggaaccaccgcggcggc 350
           ||||||||||||||||||||
Sbjct: 118 ccaggaaccaccgcggcggc 137
to top
>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   acggtgccgttgaaccacag 229
             ||||||||||||||||||||
Sbjct: 82230 acggtgccgttgaaccacag 82211
to top
>gb|BC028285.1| Mus musculus aryl hydrocarbon receptor-interacting protein-like 1,
            mRNA (cDNA clone MGC:25485 IMAGE:4501401), complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   gctgccgctcctcctcctgt 75
            ||||||||||||||||||||
Sbjct: 1843 gctgccgctcctcctcctgt 1824
to top
>emb|AL592078.10| Human DNA sequence from clone RP11-61L14 on chromosome 1 Contains the
             3' end of a novel gene (DKFZp434M202), the  UBE2Q gene for
             ubiquitin-conjugating enzyme E2Q (putative), a novel gene,
             the CHRNB2 gene for cholinergic receptor, nicotinic, beta
             polypeptide 2 (neuronal), a novel gene, the 3' end of the
             ADAR gene for adenosine deaminase, RNA-specific, complete
             sequence
          Length = 64759

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ccaggaaccaccgcggcggc 350
             ||||||||||||||||||||
Sbjct: 18747 ccaggaaccaccgcggcggc 18728
to top
>emb|X53179.1|HSHACHRB2 Human mRNA for neuronal nicotinic acetylcholine receptor beta-2
           subunit
          Length = 1771

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccaggaaccaccgcggcggc 350
           ||||||||||||||||||||
Sbjct: 20  ccaggaaccaccgcggcggc 39
to top
>emb|BX321917.4| Mouse DNA sequence from clone RP23-401C17 on chromosome 11 Contains
            the Aipl1 gene for aryl hydrocarbon receptor-interacting
            protein-like 1, complete sequence
          Length = 17884

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   gctgccgctcctcctcctgt 75
            ||||||||||||||||||||
Sbjct: 8145 gctgccgctcctcctcctgt 8164
to top
>gb|AF077186.2| Homo sapiens neuronal nicotinic acetylcholine receptor beta 2
            (CHRNB2) gene, complete cds
          Length = 11944

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  ccaggaaccaccgcggcggc 350
            ||||||||||||||||||||
Sbjct: 3239 ccaggaaccaccgcggcggc 3258
to top
>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5, complete
              sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     gctgccgctcctcctcctgt 75
              ||||||||||||||||||||
Sbjct: 142450 gctgccgctcctcctcctgt 142469
to top
>gb|AE005888.1| Caulobacter crescentus CB15 section 214 of 359 of the complete genome
          Length = 12494

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  accgtcggcgtcggctcgccggcg 449
            ||||||||||||| ||||||||||
Sbjct: 5601 accgtcggcgtcgcctcgccggcg 5624
to top
>gb|AF296412.1|AF296412 Mus musculus aryl-hydrocarbon interacting protein-like 1 (Aipl1)
           mRNA, complete cds
          Length = 1075

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gctgccgctcctcctcctgt 75
           ||||||||||||||||||||
Sbjct: 964 gctgccgctcctcctcctgt 945
to top
>dbj|AK020825.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930007I01 product:aryl hydrocarbon
           receptor-interacting protein-like 1, full insert
           sequence
          Length = 716

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gctgccgctcctcctcctgt 75
           ||||||||||||||||||||
Sbjct: 163 gctgccgctcctcctcctgt 144
to top
>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    ccagtgcagcgggtgagcagagct 126
              ||||||||| ||||||||||||||
Sbjct: 111378 ccagtgcagtgggtgagcagagct 111355
to top
>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence
          Length = 179606

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    gaaccacaggcatggcccgt 240
              ||||||||||||||||||||
Sbjct: 110310 gaaccacaggcatggcccgt 110291
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     tcgtctcgcggctgccgctc 65
              ||||||||||||||||||||
Sbjct: 391754 tcgtctcgcggctgccgctc 391773
to top
>ref|XM_215469.3| PREDICTED: Rattus norvegicus microtubule-associated protein 1b
            (Map1b), mRNA
          Length = 10491

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  gcccaccaagaaggagccta 270
            ||||||||||||||||||||
Sbjct: 2447 gcccaccaagaaggagccta 2466
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 441     tcgccggcggtgcagcagat 460
               ||||||||||||||||||||
Sbjct: 7001071 tcgccggcggtgcagcagat 7001090
to top
>emb|X60370.1|RRMAP1B5 R.norvegicus mRNA for microtubule associated protein IB
          Length = 7095

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  gcccaccaagaaggagccta 270
            ||||||||||||||||||||
Sbjct: 1995 gcccaccaagaaggagccta 2014
to top
>emb|AJ001935.1|HSAJ1935 Homo sapiens CHRNB2 gene, exon 1 (and joined CDS)
          Length = 314

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccaggaaccaccgcggcggc 350
           ||||||||||||||||||||
Sbjct: 20  ccaggaaccaccgcggcggc 39
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 339     caccgcggcggcggggtcctgcag 362
               |||||||||||||| |||||||||
Sbjct: 2930546 caccgcggcggcggcgtcctgcag 2930569
to top
>gb|AC164438.3| Mus musculus BAC clone RP23-62L19 from chromosome 9, complete sequence
          Length = 205793

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    gaaccacaggcatggcccgt 240
              ||||||||||||||||||||
Sbjct: 114792 gaaccacaggcatggcccgt 114811
to top
>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete
             sequence
          Length = 219201

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   gaaccacaggcatggcccgt 240
             ||||||||||||||||||||
Sbjct: 92364 gaaccacaggcatggcccgt 92345
to top
>gb|U62437.1|HSU62437 Human nicotinic acetylcholine receptor beta2 subunit precursor,
           mRNA, complete cds
          Length = 2448

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccaggaaccaccgcggcggc 350
           ||||||||||||||||||||
Sbjct: 118 ccaggaaccaccgcggcggc 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,183,734
Number of Sequences: 3902068
Number of extensions: 4183734
Number of successful extensions: 77514
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76690
Number of HSP's gapped (non-prelim): 814
length of query: 575
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 552
effective length of database: 17,143,297,704
effective search space: 9463100332608
effective search space used: 9463100332608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top