>SEN34_ASHGO (Q754T3) tRNA-splicing endonuclease subunit SEN34 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN34)
          Length = 292

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 411 YCIEQGGFIVKRA*SYPGDNIRYGAHXSAEPCHNGIDES 527
           Y +  GG    R  +YPGD +RY +H + +P  +  +ES
Sbjct: 187 YFLSAGGRFGARYVAYPGDPLRYHSHMAVQPAMDYYNES 225

>VATD_SCHPO (O59823) Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D|
           subunit) (Vacuolar proton pump D subunit)
          Length = 285

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 121 NGATNGTDPLGLPQLCVRLNTLQYIRSELENLEKKIKTCLRNVESAQ 261
           N   N  + + +P+L    NT++YI SELE LE++  T L+ V+  +
Sbjct: 168 NRRVNSIEHIIIPRL---ENTIKYIESELEELEREDFTRLKKVQKTK 211

>SHK2_SCHPO (Q10056) Serine/threonine-protein kinase shk2 (EC 2.7.11.1)|
          Length = 589

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 28/111 (25%), Positives = 43/111 (38%)
 Frame = +1

Query: 55  VGSKLLFKKKDKPQNPQHRGPQNGATNGTDPLGLPQLCVRLNTLQYIRSELENLEKKIKT 234
           + S+ L  K   P NP+H+    G  N  + +GLP+  + L     I  +    E K   
Sbjct: 120 ISSRALASKVSSPMNPKHQ-VHVGIDNEGNYVGLPKEWILLLQSSSITKQECMEEPKAVI 178

Query: 235 CLRNVESAQADITNGLEFKFELCQAACQEGIQHLCETTAYKVTFFDLGHIL 387
              +  S Q D T+  +  F  C+            TT+Y +   D  H L
Sbjct: 179 QALDFYSKQLDTTSETKDSFSFCKETLPRS-----STTSYSIRDADKHHKL 224

>SYA_HAEDU (Q7VLK0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 874

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 307 AACQEGIQHLCETTAYKVTFFDLGHILWDTLYIGDIASSRVDLLLRELDPILETISGTVH 486
           A CQ  +    +T  Y   F  +G ++  +L IGDI S++VD+  R+      + +  +H
Sbjct: 514 AFCQFAV---ADTQKYGQVFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSATHLLH 570

Query: 487 IXVR 498
             +R
Sbjct: 571 SALR 574

>MYO2_SCHPO (Q9USI6) Myosin type-2 heavy chain 1 (Myosin type II heavy chain 1)|
          Length = 1526

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +1

Query: 154  LPQLCVRLNTL-------QYIRSELENLEKKIKTCLRNVESAQADITNGLEFKFELCQAA 312
            LP+L   L +L       Q   ++ + LE K+K CL N++S    +T  LE K E CQ  
Sbjct: 1088 LPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKS----LTKELENKEEKCQNL 1143

Query: 313  CQEGIQHL 336
                ++++
Sbjct: 1144 SDASLKYI 1151

>CTBL1_MOUSE (Q9CWL8) Beta-catenin-like protein 1 (Nuclear-associated protein)|
           (NAP)
          Length = 563

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 205 LENLEKKIKTCLRNVESAQADITNGLEFKFELCQAACQEG-IQHLCETTAYKVTF 366
           LE L++ ++     V +  A + N  EF+ E+C  A Q+G +Q L +    K+ F
Sbjct: 201 LERLDESVREEADGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLKRLKAKMPF 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,579,953
Number of Sequences: 219361
Number of extensions: 1718603
Number of successful extensions: 4399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4399
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)