Clone Name | bart10h07 |
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Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 353 bits (178), Expect = 4e-94 Identities = 459/553 (83%) Strand = Plus / Minus Query: 15 ttcttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactatt 74 ||||||||||||| | |||||||| || || ||||| ||||| || ||||| || | || Sbjct: 10805086 ttcttttatgccccaactacctccgttgacacgatgcgaggtaggatcgaatatattgtt 10805027 Query: 75 caagaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaa 134 |||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| Sbjct: 10805026 caagaaaaaggaaaagccacagaatccacagtaccgaggatcacaaaatggaacaaccaa 10804967 Query: 135 tggaactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacat 194 ||| |||||||||| | |||||||||||||||||||||||||||||| ||||| | | | Sbjct: 10804966 tggcgctgatcccttagcccttcctcaactctgtgtacgcttgaatacgcttcaattcgt 10804907 Query: 195 ccgaagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtc 254 ||| | || || |||||| ||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 10804906 gcgaggtgaactcgagaacttagagaagaagataaaaacaggcttgcggaatgtcgagtc 10804847 Query: 255 agctcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctg 314 ||||||||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||| Sbjct: 10804846 agctcaggcagatgttaccgatggattggacatcaaatttgagctttgtcagacagcctg 10804787 Query: 315 tcaagaaggtatacaacacttgtgtgagacgactgcttacaaggtcacctttttcgactt 374 |||||| || || || || || |||||||| ||||| || ||||| || || | || || Sbjct: 10804786 tcaagagggcattcagcagttatgtgagacaactgcatataaggtgacattctatgattt 10804727 Query: 375 gggccatattctgtgggacaccctctacattggtgatattgcatcgagcagggtggattt 434 ||| || |||| ||||| | ||| || |||||||| |||||||| || ||| | || | Sbjct: 10804726 ggggcacgttctctgggatatcctttatattggtgacattgcatcaagtaggatcgagat 10804667 Query: 435 attgttaagagagcttgatcctatcctggagacaatatcaggtacggtgcacatcanagt 494 |||||| ||||| || || ||||| || ||||| ||||| |||| |||||| | || ||| Sbjct: 10804666 attgttgagagaactcgaccctatactagagaccatatctggtatggtgcataacaaagt 10804607 Query: 495 gcggaaccgtgccataacggcattgatgaaagccacgttcgacggcttcttgctggttat 554 |||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | Sbjct: 10804606 gcggaaccgtgctataaccgcattgatgaaagccacttttgatgggttcttgctggtgct 10804547 Query: 555 ccttgctggtggg 567 |||||||||||| Sbjct: 10804546 tcttgctggtggg 10804534
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 353 bits (178), Expect = 4e-94 Identities = 459/553 (83%) Strand = Plus / Minus Query: 15 ttcttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactatt 74 ||||||||||||| | |||||||| || || ||||| ||||| || ||||| || | || Sbjct: 28809 ttcttttatgccccaactacctccgttgacacgatgcgaggtaggatcgaatatattgtt 28750 Query: 75 caagaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaa 134 |||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| Sbjct: 28749 caagaaaaaggaaaagccacagaatccacagtaccgaggatcacaaaatggaacaaccaa 28690 Query: 135 tggaactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacat 194 ||| |||||||||| | |||||||||||||||||||||||||||||| ||||| | | | Sbjct: 28689 tggcgctgatcccttagcccttcctcaactctgtgtacgcttgaatacgcttcaattcgt 28630 Query: 195 ccgaagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtc 254 ||| | || || |||||| ||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 28629 gcgaggtgaactcgagaacttagagaagaagataaaaacaggcttgcggaatgtcgagtc 28570 Query: 255 agctcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctg 314 ||||||||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||| Sbjct: 28569 agctcaggcagatgttaccgatggattggacatcaaatttgagctttgtcagacagcctg 28510 Query: 315 tcaagaaggtatacaacacttgtgtgagacgactgcttacaaggtcacctttttcgactt 374 |||||| || || || || || |||||||| ||||| || ||||| || || | || || Sbjct: 28509 tcaagagggcattcagcagttatgtgagacaactgcatataaggtgacattctatgattt 28450 Query: 375 gggccatattctgtgggacaccctctacattggtgatattgcatcgagcagggtggattt 434 ||| || |||| ||||| | ||| || |||||||| |||||||| || ||| | || | Sbjct: 28449 ggggcacgttctctgggatatcctttatattggtgacattgcatcaagtaggatcgagat 28390 Query: 435 attgttaagagagcttgatcctatcctggagacaatatcaggtacggtgcacatcanagt 494 |||||| ||||| || || ||||| || ||||| ||||| |||| |||||| | || ||| Sbjct: 28389 attgttgagagaactcgaccctatactagagaccatatctggtatggtgcataacaaagt 28330 Query: 495 gcggaaccgtgccataacggcattgatgaaagccacgttcgacggcttcttgctggttat 554 |||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | Sbjct: 28329 gcggaaccgtgctataaccgcattgatgaaagccacttttgatgggttcttgctggtgct 28270 Query: 555 ccttgctggtggg 567 |||||||||||| Sbjct: 28269 tcttgctggtggg 28257
>dbj|AK070620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062D09, full insert sequence Length = 3538 Score = 353 bits (178), Expect = 4e-94 Identities = 459/553 (83%) Strand = Plus / Plus Query: 15 ttcttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactatt 74 ||||||||||||| | |||||||| || || ||||| ||||| || ||||| || | || Sbjct: 2140 ttcttttatgccccaactacctccgttgacacgatgcgaggtaggatcgaatatattgtt 2199 Query: 75 caagaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaa 134 |||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| Sbjct: 2200 caagaaaaaggaaaagccacagaatccacagtaccgaggatcacaaaatggaacaaccaa 2259 Query: 135 tggaactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacat 194 ||| |||||||||| | |||||||||||||||||||||||||||||| ||||| | | | Sbjct: 2260 tggcgctgatcccttagcccttcctcaactctgtgtacgcttgaatacgcttcaattcgt 2319 Query: 195 ccgaagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtc 254 ||| | || || |||||| ||||||||||||| |||||| ||||||||||||| ||||| Sbjct: 2320 gcgaggtgaactcgagaacttagagaagaagataaaaacaggcttgcggaatgtcgagtc 2379 Query: 255 agctcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctg 314 ||||||||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||| Sbjct: 2380 agctcaggcagatgttaccgatggattggacatcaaatttgagctttgtcagacagcctg 2439 Query: 315 tcaagaaggtatacaacacttgtgtgagacgactgcttacaaggtcacctttttcgactt 374 |||||| || || || || || |||||||| ||||| || ||||| || || | || || Sbjct: 2440 tcaagagggcattcagcagttatgtgagacaactgcatataaggtgacattctatgattt 2499 Query: 375 gggccatattctgtgggacaccctctacattggtgatattgcatcgagcagggtggattt 434 ||| || |||| ||||| | ||| || |||||||| |||||||| || ||| | || | Sbjct: 2500 ggggcacgttctctgggatatcctttatattggtgacattgcatcaagtaggatcgagat 2559 Query: 435 attgttaagagagcttgatcctatcctggagacaatatcaggtacggtgcacatcanagt 494 |||||| ||||| || || ||||| || ||||| ||||| |||| |||||| | || ||| Sbjct: 2560 attgttgagagaactcgaccctatactagagaccatatctggtatggtgcataacaaagt 2619 Query: 495 gcggaaccgtgccataacggcattgatgaaagccacgttcgacggcttcttgctggttat 554 |||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | Sbjct: 2620 gcggaaccgtgctataaccgcattgatgaaagccacttttgatgggttcttgctggtgct 2679 Query: 555 ccttgctggtggg 567 |||||||||||| Sbjct: 2680 tcttgctggtggg 2692
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 347 bits (175), Expect = 2e-92 Identities = 456/550 (82%) Strand = Plus / Minus Query: 18 ttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactattcaa 77 |||||||||| | |||||||| || || ||||| ||||| || ||||| || | ||||| Sbjct: 141701 ttttatgccccaactacctccgttgacacgatgcgaggtaggatcgaatatattgttcaa 141642 Query: 78 gaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaatgg 137 ||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||||| Sbjct: 141641 gaaaaaggaaaagccacagaatccacagtaccgaggatcacaaaatggaacaaccaatgg 141582 Query: 138 aactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacatccg 197 |||||||||| | |||||||||||||||||||||||||||||| ||||| | | | || Sbjct: 141581 cgctgatcccttagcccttcctcaactctgtgtacgcttgaatacgcttcaattcgtgcg 141522 Query: 198 aagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtcagc 257 | | || || |||||| ||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 141521 aggtgaactcgagaacttagagaagaagataaaaacaggcttgcggaatgtcgagtcagc 141462 Query: 258 tcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctgtca 317 |||||||||| |||| |||||||||| |||| ||||| ||||||||| | |||||||| Sbjct: 141461 tcaggcagatgttaccgatggattggacatcaaatttgagctttgtcagacagcctgtca 141402 Query: 318 agaaggtatacaacacttgtgtgagacgactgcttacaaggtcacctttttcgacttggg 377 ||| || || || || || |||||||| ||||| || ||||| || || | || ||||| Sbjct: 141401 agagggcattcagcagttatgtgagacaactgcatataaggtgacattctatgatttggg 141342 Query: 378 ccatattctgtgggacaccctctacattggtgatattgcatcgagcagggtggatttatt 437 || |||| ||||| | ||| || |||||||| |||||||| || ||| | || |||| Sbjct: 141341 gcacgttctctgggatatcctttatattggtgacattgcatcaagtaggatcgagatatt 141282 Query: 438 gttaagagagcttgatcctatcctggagacaatatcaggtacggtgcacatcanagtgcg 497 ||| ||||| || || ||||| || ||||| ||||| |||| |||||| | || |||||| Sbjct: 141281 gttgagagaactcgaccctatactagagaccatatctggtatggtgcataacaaagtgcg 141222 Query: 498 gaaccgtgccataacggcattgatgaaagccacgttcgacggcttcttgctggttatcct 557 ||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | || Sbjct: 141221 gaaccgtgctataaccgcattgatgaaagccacttttgatgggttcttgctggtgcttct 141162 Query: 558 tgctggtggg 567 |||||||||| Sbjct: 141161 tgctggtggg 141152
>dbj|AK102844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109P13, full insert sequence Length = 2899 Score = 345 bits (174), Expect = 1e-91 Identities = 458/553 (82%) Strand = Plus / Plus Query: 15 ttcttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactatt 74 ||||||||||||| | |||||||| || || ||||| ||||| || ||||| || | || Sbjct: 1510 ttcttttatgccccaactacctccgttgacacgatgcgaggtaggatcgaatatattgtt 1569 Query: 75 caagaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaa 134 |||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| Sbjct: 1570 caagaaaaaggaaaagccacagaatccacagtaccgaggatcacaaaatggaacaaccaa 1629 Query: 135 tggaactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacat 194 ||| |||||||||| | |||||||||||||||||||||||||||||| ||||| | | | Sbjct: 1630 tggcgctgatcccttagcccttcctcaactctgtgtacgcttgaatacgcttcaattcgt 1689 Query: 195 ccgaagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtc 254 ||| | || || |||||| |||||||||||| |||||| ||||||||||||| ||||| Sbjct: 1690 gcgaggtgaactcgagaacttagagaagaagagaaaaacaggcttgcggaatgtcgagtc 1749 Query: 255 agctcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctg 314 ||||||||||||| |||| |||||||||| |||| ||||| ||||||||| | ||||| Sbjct: 1750 agctcaggcagatgttaccgatggattggacatcaaatttgagctttgtcagacagcctg 1809 Query: 315 tcaagaaggtatacaacacttgtgtgagacgactgcttacaaggtcacctttttcgactt 374 |||||| || || || || || |||||||| ||||| || ||||| || || | || || Sbjct: 1810 tcaagagggcattcagcagttatgtgagacaactgcatataaggtgacattctatgattt 1869 Query: 375 gggccatattctgtgggacaccctctacattggtgatattgcatcgagcagggtggattt 434 ||| || |||| ||||| | ||| || |||||||| |||||||| || ||| | || | Sbjct: 1870 ggggcacgttctctgggatatcctttatattggtgacattgcatcaagtaggatcgagat 1929 Query: 435 attgttaagagagcttgatcctatcctggagacaatatcaggtacggtgcacatcanagt 494 |||||| ||||| || || ||||| || ||||| ||||| |||| |||||| | || ||| Sbjct: 1930 attgttgagagaactcgaccctatactagagaccatatctggtatggtgcataacaaagt 1989 Query: 495 gcggaaccgtgccataacggcattgatgaaagccacgttcgacggcttcttgctggttat 554 |||||||||||| ||||| ||||||||||||||||| || || || ||||||||||| | Sbjct: 1990 gcggaaccgtgctataaccgcattgatgaaagccacttttgatgggttcttgctggtgct 2049 Query: 555 ccttgctggtggg 567 |||||||||||| Sbjct: 2050 tcttgctggtggg 2062
>gb|AY107785.1| Zea mays PCO113400 mRNA sequence Length = 685 Score = 272 bits (137), Expect = 1e-69 Identities = 293/345 (84%) Strand = Plus / Plus Query: 15 ttcttttatgcccgagctacctccattaacgcgatgtgaggttggctcgaaactactatt 74 ||||||||||||| | ||||| ||| |||||||||| ||||||||||| || || |||| Sbjct: 297 ttcttttatgccccaactacccccactaacgcgatgcgaggttggctccaagttattatt 356 Query: 75 caagaaaaaggataagccacagaatccacagcatcgaggaccacaaaatggagcaaccaa 134 |||||||||||| |||||||| |||| ||| ||| | | |||||||||||||| | || Sbjct: 357 caagaaaaaggagaagccacaaaatctgcaggttcgtgtatcacaaaatggagcatcaaa 416 Query: 135 tggaactgatcccttgggccttcctcaactctgtgtacgcttgaatacacttcagtacat 194 |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct: 417 cggaaatgatcccttgggccttcctcaactctgtgtgcgcctgaatactcttcagtacat 476 Query: 195 ccgaagcgagctggagaacctagagaagaagattaaaacatgcttgcggaatgttgagtc 254 ||| | ||| | ||||| ||||||||||| |||||||| |||| || ||||||||||| Sbjct: 477 ccgtggtgagtttgagaatctagagaagaaaattaaaacgagcttacgaaatgttgagtc 536 Query: 255 agctcaggcagatattactaatggattggagttcaagtttgaactttgtcaggcggcctg 314 ||||||||||||||| ||| |||||||| | |||||||||| ||||| ||||| ||||| Sbjct: 537 agctcaggcagatatcactgatggattgaacatcaagtttgagctttgccaggcagcctg 596 Query: 315 tcaagaaggtatacaacacttgtgtgagacgactgcttacaaggt 359 ||||||||| || || || | |||||||||||||| || ||||| Sbjct: 597 tcaagaaggcattcagcagatttgtgagacgactgcatataaggt 641
>gb|AY105856.1| Zea mays PCO109734 mRNA sequence Length = 886 Score = 65.9 bits (33), Expect = 1e-07 Identities = 74/88 (84%) Strand = Plus / Plus Query: 480 ggtgcacatcanagtgcggaaccgtgccataacggcattgatgaaagccacgttcgacgg 539 |||||||| || ||||||||||||||| || || ||| |||||||||| || || || || Sbjct: 64 ggtgcacaacaaagtgcggaaccgtgctattactgcactgatgaaagcaacttttgatgg 123 Query: 540 cttcttgctggttatccttgctggtggg 567 ||||||||||| | |||||||||||| Sbjct: 124 tttcttgctggtgcttcttgctggtggg 151
>ref|XM_482187.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2928 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 405 tggtgatattgcatcgagcagggtggatttattgttaagagagcttgatcctatcct 461 |||||||| |||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 2403 tggtgatactgcatcaaacagggtggagcctttgttgagagagcttgatcctatcct 2459 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 217 gagaagaagattaaaacatgcttgcggaatgttga 251 ||||||||||||||||||| ||| || |||||||| Sbjct: 2218 gagaagaagattaaaacatacttccgaaatgttga 2252
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 405 tggtgatattgcatcgagcagggtggatttattgttaagagagcttgatcctatcct 461 |||||||| |||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 18474742 tggtgatactgcatcaaacagggtggagcctttgttgagagagcttgatcctatcct 18474686 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 217 gagaagaagattaaaacatgcttgcggaatgttga 251 ||||||||||||||||||| ||| || |||||||| Sbjct: 18474927 gagaagaagattaaaacatacttccgaaatgttga 18474893 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 aatggattggagttcaagttt 294 ||||||||||||||||||||| Sbjct: 525951 aatggattggagttcaagttt 525931
>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0671F11 Length = 159409 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 405 tggtgatattgcatcgagcagggtggatttattgttaagagagcttgatcctatcct 461 |||||||| |||||| | ||||||||| ||||| |||||||||||||||||||| Sbjct: 56765 tggtgatactgcatcaaacagggtggagcctttgttgagagagcttgatcctatcct 56709 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 217 gagaagaagattaaaacatgcttgcggaatgttga 251 ||||||||||||||||||| ||| || |||||||| Sbjct: 56950 gagaagaagattaaaacatacttccgaaatgttga 56916
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 tggattggagttcaagtttgaa 297 |||||||||||||||||||||| Sbjct: 25820312 tggattggagttcaagtttgaa 25820333
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 tggattggagttcaagtttgaa 297 |||||||||||||||||||||| Sbjct: 66918 tggattggagttcaagtttgaa 66939
>gb|AY316538.1| Homo sapiens interleukin 15 receptor, alpha (IL15RA) gene, complete cds Length = 35809 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 aagaaaaaggataagccacagaatc 100 |||| |||||||||||||||||||| Sbjct: 14089 aagagaaaggataagccacagaatc 14065
>emb|AL137186.18| Human DNA sequence from clone RP11-536K7 on chromosome 10 Contains the 5' end of a novel gene, the FBXO18 gene for likely ortholog of mouse f-box only protein 18 (FBH1,FLJ14590), the IL15RA gene for interleukin 15 receptor, alpha (IL15RA), the 3' end of the IL2RA gene for interleukin 2 receptor, alpha (CD25,IL2R,TCGFR), two novel genes and two CpG islands, complete sequence Length = 191607 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 76 aagaaaaaggataagccacagaatc 100 |||| |||||||||||||||||||| Sbjct: 107571 aagagaaaggataagccacagaatc 107595
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 tcaagtttgaactttgtcagg 307 ||||||||||||||||||||| Sbjct: 152442 tcaagtttgaactttgtcagg 152422
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 tttattgttaagagagcttga 452 ||||||||||||||||||||| Sbjct: 6159375 tttattgttaagagagcttga 6159395
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 aatggattggagttcaagttt 294 ||||||||||||||||||||| Sbjct: 115911 aatggattggagttcaagttt 115891
>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5) Length = 893329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 caaggtcacctttttcgactt 374 ||||||||||||||||||||| Sbjct: 821701 caaggtcacctttttcgactt 821681
>ref|XM_369835.1| Magnaporthe grisea 70-15 hypothetical protein (MG06350.4) partial mRNA Length = 2940 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgatcccttgggccttcctc 160 |||||||||||||||||||| Sbjct: 1284 tgatcccttgggccttcctc 1265
>gb|AC182645.3| Pan troglodytes BAC clone CH251-7F19 from chromosome 10, complete sequence Length = 221731 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 104208 aaggtatacaacacttgtgt 104227
>emb|CR769776.8| Human DNA sequence from clone RP11-793G16 on chromosome 9 Contains three novel pseudogenes, the gene for a novel protein similar to ankyrin repeat domain 20A (ANKRD20A), the gene for a novel protein similar to Ankyrin repeat domain protein 18A (LOC441424), a pseudogene similar to part of cytochrome P450 family protein, a novel zinc finger pseudogene and a CpG island, complete sequence Length = 161157 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 116493 aactactattcaagaaaaag 116512
>emb|CR848007.6| Human DNA sequence from clone RP11-115C9 on chromosome 9 Contains a calponin 2 (CNN2) pseudogene, a novel zinc finger pseudogene, a pseudogene similar to part of cytochrome P450, subfamily IVF, a chromosome 2 open reading frame 14 (C2orf14) pseudogene, a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1), a melanoma antigen (LOC51152) pseudogene, four novel pseudogenes and an ankyrin repeat domain 20A (ANKRD20A) pseudogene, complete sequence Length = 149891 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 130908 aactactattcaagaaaaag 130927
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three novel pseudogenes, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), two novel genes, the 5' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A) and three CpG islands, complete sequence Length = 165886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 145153 aactactattcaagaaaaag 145134
>emb|BX649567.3| Human DNA sequence from clone RP11-195B21 on chromosome 9 Contains a novel pseudogene, the gene for a novel protein similar to ankyrin repeat domain 20A (ANKRD20A), a novel gene and a CpG island, complete sequence Length = 99502 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 29321 aactactattcaagaaaaag 29302
>emb|AL603703.10| Human DNA sequence from clone RP11-773D16 on chromosome 10 Contains the 3' end of novel gene, a novel gene and a novel pseudogene, complete sequence Length = 135183 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 29465 aaggtatacaacacttgtgt 29484
>gb|DQ366735.1| Uncultured Prochlorococcus marinus clone HOT0M-2B5 genomic sequence Length = 35254 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 gaaactactattcaagaaaa 82 |||||||||||||||||||| Sbjct: 9212 gaaactactattcaagaaaa 9231
>gb|DQ366716.1| Uncultured Prochlorococcus marinus clone ASNC2388 genomic sequence Length = 37730 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 gaaactactattcaagaaaa 82 |||||||||||||||||||| Sbjct: 8355 gaaactactattcaagaaaa 8336
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 32788 aaggtatacaacacttgtgt 32807
>emb|AL450388.13| Human DNA sequence from clone RP11-292F22 on chromosome 10 Contains the 5' end of a novel gene similar to LOC195977 (FLJ32754), a novel pseudogene (LOC195977 FLJ32754), an S-adenosylhomocysteine hydrolase (AHCY) pseudogene, three novel genes and two CpG islands, complete sequence Length = 160496 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 44818 aaggtatacaacacttgtgt 44837
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tacaaggtcacctttttcga 371 |||||||||||||||||||| Sbjct: 244612 tacaaggtcacctttttcga 244593
>emb|AL358232.19| Human DNA sequence from clone RP11-533K9 on chromosome 9 Contains the 3' end of a novel gene simlar to mouse hippocampus abundant gene transcript 1, a gene for a novel protein and a leishmanolysin-like (metallopeptidase M8 family)(LMLN) pseudogene, complete sequence Length = 114340 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 36862 aactactattcaagaaaaag 36881 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 34904 aactactattcaagaaaaag 34923
>emb|AL157893.16| Human DNA sequence from clone RP11-322M19 on chromosome 10 Contains the gene for a novel protein highly similar to KIAA2020, two novel genes and a CpG island, complete sequence Length = 162286 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 26430 aaggtatacaacacttgtgt 26449
>emb|BX649563.5| Human DNA sequence from clone RP11-213O5 on chromosome 9 Contains a pseudogene similar to part of a novel protein (DKFZp434A171), a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of a novel transmembrane receptor protein and two novel pseudogenes, complete sequence Length = 189495 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 14880 aactactattcaagaaaaag 14899
>emb|AL844589.3| Mouse DNA sequence from clone RP23-139C9 on chromosome 4, complete sequence Length = 162642 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 cctagagaagaagattaaaacatg 236 |||||| ||||||||||||||||| Sbjct: 43017 cctagaaaagaagattaaaacatg 42994
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gattggagttcaagtttgaa 297 |||||||||||||||||||| Sbjct: 9812673 gattggagttcaagtttgaa 9812692
>gb|AC067956.3| Homo sapiens BAC clone RP11-140F14 from 2, complete sequence Length = 171708 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 aggaccacaaaatggagcaaccaa 134 |||||| ||||||||||||||||| Sbjct: 125382 aggaccccaaaatggagcaaccaa 125405
>gb|AC084123.9| Homo sapiens chromosome 8, clone CTD-2267H22, complete sequence Length = 120725 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tgttgagtcagctcaggcag 265 |||||||||||||||||||| Sbjct: 103397 tgttgagtcagctcaggcag 103416
>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence Length = 194189 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 tgttgagtcagctcaggcag 265 |||||||||||||||||||| Sbjct: 41455 tgttgagtcagctcaggcag 41474
>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete sequence Length = 219376 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 151672 aactactattcaagaaaaag 151653
>emb|AL163540.11| Human DNA sequence from clone RP11-348N17 on chromosome 22, complete sequence Length = 166566 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 55985 aactactattcaagaaaaag 55966
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 aagaagattaaaacatgctt 239 |||||||||||||||||||| Sbjct: 2970428 aagaagattaaaacatgctt 2970447
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gattggagttcaagtttgaa 297 |||||||||||||||||||| Sbjct: 9812558 gattggagttcaagtttgaa 9812577
>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence Length = 151729 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gagttcaagtttgaactttg 302 |||||||||||||||||||| Sbjct: 145642 gagttcaagtttgaactttg 145661
>emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa0054I14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148089 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gattggagttcaagtttgaa 297 |||||||||||||||||||| Sbjct: 138630 gattggagttcaagtttgaa 138649
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gattggagttcaagtttgaa 297 |||||||||||||||||||| Sbjct: 119797 gattggagttcaagtttgaa 119778
>emb|AL929339.4| Human DNA sequence from clone RP11-266E11 on chromosome 9, complete sequence Length = 74915 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aactactattcaagaaaaag 84 |||||||||||||||||||| Sbjct: 45298 aactactattcaagaaaaag 45279
>emb|AL132656.15|HSA119F19 Human DNA sequence from clone RP11-119F19 on chromosome 10, complete sequence Length = 153370 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 aaggtatacaacacttgtgt 339 |||||||||||||||||||| Sbjct: 49422 aaggtatacaacacttgtgt 49441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,297,139 Number of Sequences: 3902068 Number of extensions: 4297139 Number of successful extensions: 68412 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68090 Number of HSP's gapped (non-prelim): 311 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)