ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10g09 |
|---|---|
| Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 81.6 bits (200), Expect = 1e-15 Identities = 51/134 (38%), Positives = 69/134 (51%) Frame = +3 Query: 102 SPAPANRSRCYKRLFSFGDSLIDTGNFVVHYANASGPVLALPYGETFFGRPTGRWSDGRL 281 SP+ + +F+FGDS DTG + A GP P+G +FFG P GR+ DGRL Sbjct: 18 SPSTHAHQCHFPAIFNFGDSNSDTGGLSAAFGQA-GP----PHGSSFFGSPAGRYCDGRL 72 Query: 282 VVDFIVERLGFPYWPAYLQAAAGKSPAEKFRYGANFAVAAATALSQEFFIKKNLSVDQLP 461 V+DFI E LG PY A+L S F +GANFA A + + ++++ Sbjct: 73 VIDFIAESLGLPYLSAFLD-----SVGSNFSHGANFATAGSPIRALNSTLRQS------- 120 Query: 462 PIPPYSLDVQIGLF 503 P+SLDVQ F Sbjct: 121 GFSPFSLDVQFVQF 134
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 78.2 bits (191), Expect = 1e-14 Identities = 54/138 (39%), Positives = 71/138 (51%) Frame = +3 Query: 102 SPAPANRSRCYKRLFSFGDSLIDTGNFVVHYANASGPVLALPYGETFFGRPTGRWSDGRL 281 S A A+ + + +F+FGDS DTG A A P L PYGETFF R TGR+SDGRL Sbjct: 22 SLAYASETCDFPAIFNFGDSNSDTGG----KAAAFYP-LNPPYGETFFHRSTGRYSDGRL 76 Query: 282 VVDFIVERLGFPYWPAYLQAAAGKSPAEKFRYGANFAVAAATALSQEFFIKKNLSVDQLP 461 ++DFI E PY YL S F++GA+FA A +T I + Sbjct: 77 IIDFIAESFNLPYLSPYL-----SSLGSNFKHGADFATAGSTIKLPTTIIPAH------G 125 Query: 462 PIPPYSLDVQIGLFKKLL 515 P+ LDVQ F++ + Sbjct: 126 GFSPFYLDVQYSQFRQFI 143
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 40.4 bits (93), Expect = 0.003 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +3 Query: 105 PAPANRSRCYKRLFSFGDSLIDTGNFVVHYANASGPVLALPYGETF-FGRPTGRWSDGRL 281 P P N++ +F FGDS+ DTGN + + PYG F G TGR+S+GR+ Sbjct: 116 PKPQNKT--IPAVFFFGDSIFDTGN--NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRV 171 Query: 282 VVDFIVERLGF-PYWPAYL 335 D+I + LG PAY+ Sbjct: 172 ASDYISKYLGVKEIVPAYV 190
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 37.4 bits (85), Expect = 0.026 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Frame = +3 Query: 105 PAPANRSRCYKRLFSFGDSLIDTGNFVVHYANASGPVLA--LPYGETF-FGRPTGRWSDG 275 P P N++ +F FGDS+ DTGN N + + PYG F F TGR+S+G Sbjct: 195 PKPENKT--IPAVFFFGDSVFDTGN----NNNLETKIKSNYRPYGMDFKFRVATGRFSNG 248 Query: 276 RLVVDFIVERLGF-PYWPAYL 335 + D++ + +G PAYL Sbjct: 249 MVASDYLAKYMGVKEIVPAYL 269
>Y1899_MYCTU (O07733) UPF0189 protein Rv1899c/MT1950| Length = 359 Score = 31.6 bits (70), Expect = 1.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 1 KKIHPPQWLRRRLCLCSSWWPRS 69 + + PQW R R+ LC WW RS Sbjct: 146 RSLDGPQWRRARVRLCGRWWRRS 168
>Y1934_MYCBO (Q7TZB9) UPF0189 protein Mb1934c| Length = 358 Score = 31.6 bits (70), Expect = 1.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 1 KKIHPPQWLRRRLCLCSSWWPRS 69 + + PQW R R+ LC WW RS Sbjct: 145 RSLDGPQWRRARVRLCGRWWRRS 167
>PTFC_BACAM (P41029) Fructose permease IIC component (PTS system| fructose-specific EIIC component) (Fragment) Length = 304 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = +3 Query: 135 KRLFSFGDSLIDTGNFVVHYANASG---PVLALPYGETFF 245 K F+FG ++ID GN+ H A +G P L + TFF Sbjct: 162 KAAFTFGIAMIDAGNYAPHAAIMAGGMVPPLGIALATTFF 201
>Y1288_MYCTU (Q10614) Hypothetical protein Rv1288/MT1326| Length = 456 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/59 (40%), Positives = 29/59 (49%) Frame = +3 Query: 183 VVHYANASGPVLALPYGETFFGRPTGRWSDGRLVVDFIVERLGFPYWPAYLQAAAGKSP 359 VVH+AN S VL L G T +G P W R+ D VER+ Y + AG SP Sbjct: 330 VVHWANLSSAVLDLG-GGTVYGAPL--WDQARVSADNPVERID-SYRNKRIFLVAGTSP 384
>SYM_BDEBA (Q6MMA3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 687 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = +3 Query: 264 WSD-GRLVVDFI---VERLGFPYWPAYLQAAAGKSPAEKFRYGANFAVAAATALSQEFFI 431 W D R + FI + R +WPA+L+AA +SP + F +G + S+ FI Sbjct: 279 WQDPSREIYHFIGKDIARFHTIFWPAFLKAAEFRSPNQVFVHGHLMVNGEKMSKSKGTFI 338 Query: 432 KKNLSVDQLPP 464 ++ L P Sbjct: 339 AARTYLNHLNP 349
>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (Mitochondrial ATP-binding cassette 2) (M-ABC2) Length = 738 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +3 Query: 339 AAAGKSPAEKFRYGANFAVAAATALSQEFFIKKNLSVDQLPPIPPYSL 482 A G+S E G A+ +S FF+ NL+ L +PP S+ Sbjct: 280 ALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 327
>KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) Length = 598 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +2 Query: 392 CGGRHGAEPGVLH*EEPQRRPVAPDPPVLPR 484 C R GAEPG RP+ P PP LP+ Sbjct: 49 CSARRGAEPG--------ERPLPPQPPELPQ 71
>ATPA_MYCLE (P45825) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 558 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +3 Query: 204 SGPVLALPYGETFFGR---PTGRWSDGRLVVDFIVERLGFPYWPAYLQAAAGKSPAE 365 +G VL++P GE F GR P G+ DGR ++ R P+ +Q + K P + Sbjct: 94 TGDVLSVPVGEAFMGRVVNPLGQPIDGRGDIEAEARRALELQAPSVVQRQSVKEPLQ 150
>RIM_CAEEL (Q22366) Rab-3-interacting molecule unc-10 (Rim) (Uncoordinated| protein 10) Length = 1563 Score = 29.3 bits (64), Expect = 7.0 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = -3 Query: 138 ACSTCSGSPAQATHTPSWPQTEQGTRPP-GAAEAEPTPQPL 19 ACS C T W Q E+ +P +E P+PQPL Sbjct: 112 ACSLCQKRQQILAKTGKWFQPEEQPQPKISGSEPSPSPQPL 152
>FOXC2_MOUSE (Q61850) Forkhead box protein C2 (Forkhead-related protein FKHL14)| (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14) Length = 494 Score = 29.3 bits (64), Expect = 7.0 Identities = 21/65 (32%), Positives = 25/65 (38%) Frame = +2 Query: 326 GIPAGGSREVAGREVPVRCQFRCGGRHGAEPGVLH*EEPQRRPVAPDPPVLPRRADRLVQ 505 G P G AG+E + G H G LH PQ P AP PP P+ A + Sbjct: 365 GSPLGALNLAAGQEGALGAS----GHHHQHHGHLH---PQAPPPAPQPPPAPQPATQATS 417 Query: 506 ETARH 520 H Sbjct: 418 WYLNH 422
>SYM_VIBPA (Q87N07) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 688 Score = 29.3 bits (64), Expect = 7.0 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +3 Query: 318 YWPAYLQAAAGKSPAEKFRYGANFAVAAATALSQEFFIKKNLSVDQLPP 464 +WPA L+ + + P F +G A + S+ F+K + +D L P Sbjct: 309 FWPAMLEGSGFRKPNNVFVHGYVTVNGAKMSKSKGTFVKASTYLDHLDP 357
>FOXO1_HUMAN (Q12778) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)| Length = 655 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +2 Query: 392 CGGRHGAEPGVLH*EEPQRRPVAP---DPPVLPRRADRLVQETARHS 523 CG G E G LH PQ P P PPV P A L + + S Sbjct: 107 CGDFQGPEAGCLHPAPPQPPPPGPVSQHPPVPPAAAGPLAGQPRKSS 153
>SYM_PHOPR (Q6LSZ7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 680 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +3 Query: 318 YWPAYLQAAAGKSPAEKFRYGANFAVAAATALSQEFFIKKNLSVDQLPP 464 +WPA L+ A + P F +G A + S+ FIK ++ L P Sbjct: 304 FWPAMLEGAGFRKPNNVFVHGYVTVNGAKMSKSKGTFIKAGTYLEHLDP 352
>NLGN2_RAT (Q62888) Neuroligin-2 precursor| Length = 836 Score = 28.9 bits (63), Expect = 9.1 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +2 Query: 323 AGIPAGGSR-EVAGREVP-----VRCQFRCGGRHGAEPGVLH*EEPQRRPVAPDPPVLPR 484 +G+P GG AGRE+P V Q + GG GA+P E R PD + R Sbjct: 721 SGVPGGGPLLPTAGRELPPEEELVSLQLKRGGGVGADPA-----EALRPACPPDYTLALR 775 Query: 485 RA 490 RA Sbjct: 776 RA 777
>NGLN2_MOUSE (Q69ZK9) Neuroligin-2 precursor| Length = 836 Score = 28.9 bits (63), Expect = 9.1 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +2 Query: 323 AGIPAGGSR-EVAGREVP-----VRCQFRCGGRHGAEPGVLH*EEPQRRPVAPDPPVLPR 484 +G+P GG AGRE+P V Q + GG GA+P E R PD + R Sbjct: 721 SGVPGGGPLLPTAGRELPPEEELVSLQLKRGGGVGADPA-----EALRPACPPDYTLALR 775 Query: 485 RA 490 RA Sbjct: 776 RA 777
>USH_DROME (Q9VPQ6) Zinc-finger protein ush (Protein U-shaped)| Length = 1191 Score = 28.9 bits (63), Expect = 9.1 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -3 Query: 123 SGSPAQATHTPSWPQT----EQGTRPPGAAEAEPTPQP 22 + SP+ +PS PQ EQ PP EA P P P Sbjct: 107 ANSPSTPPRSPSSPQLIPKLEQPATPPSEPEASPCPSP 144
>NLGN2_HUMAN (Q8NFZ4) Neuroligin-2 precursor| Length = 835 Score = 28.9 bits (63), Expect = 9.1 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +2 Query: 323 AGIPAGGSR-EVAGREVP-----VRCQFRCGGRHGAEPGVLH*EEPQRRPVAPDPPVLPR 484 +G+P GG AGRE+P V Q + GG GA+P E R PD + R Sbjct: 720 SGVPGGGPLLPAAGRELPPEEELVSLQLKRGGGVGADPA-----EALRPACPPDYTLALR 774 Query: 485 RA 490 RA Sbjct: 775 RA 776 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,643,501 Number of Sequences: 219361 Number of extensions: 1394982 Number of successful extensions: 6011 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5543 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5992 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
