ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10g08 |
|---|---|
| Clone Library Name | barley_pub |
>CNOT6_RAT (Q6AXU9) CCR4-NOT transcription complex subunit 6 (EC 3.1.-.-)| (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4 homolog) (CCR4 carbon catabolite repression 4-like) Length = 557 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Frame = +1 Query: 223 EPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCI 402 EPD F ++ YN+L Y + + PS +L W R KA++ E+ S NAD++ + Sbjct: 179 EPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISL 238 Query: 403 QEL--DEYETFYRKNMESSGYSSIYVQRSGDKR---------DGCGIFYKPKSVELLQKE 549 QE+ ++Y +F+ ++ GY+ + +S + DGC IF+K + L+QK Sbjct: 239 QEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKH 298 Query: 550 VIHYNDL 570 + +N L Sbjct: 299 TVEFNQL 305
>CNOT6_MOUSE (Q8K3P5) CCR4-NOT transcription complex subunit 6 (EC 3.1.-.-)| (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4 homolog) (CCR4 carbon catabolite repression 4-like) Length = 557 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Frame = +1 Query: 223 EPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCI 402 EPD F ++ YN+L Y + + PS +L W R KA++ E+ S NAD++ + Sbjct: 179 EPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISL 238 Query: 403 QEL--DEYETFYRKNMESSGYSSIYVQRSGDKR---------DGCGIFYKPKSVELLQKE 549 QE+ ++Y +F+ ++ GY+ + +S + DGC IF+K + L+QK Sbjct: 239 QEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKH 298 Query: 550 VIHYNDL 570 + +N L Sbjct: 299 TVEFNQL 305
>CNOT6_HUMAN (Q9ULM6) CCR4-NOT transcription complex subunit 6 (EC 3.1.-.-)| (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4 homolog) (CCR4 carbon catabolite repression 4-like) Length = 557 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Frame = +1 Query: 223 EPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCI 402 EPD F ++ YN+L Y + + PS +L W R KA++ E+ S NAD++ + Sbjct: 179 EPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSL 238 Query: 403 QEL--DEYETFYRKNMESSGYSSIYVQRSGDKR---------DGCGIFYKPKSVELLQKE 549 QE+ ++Y +F+ ++ GY+ + +S + DGC IF+K + L+QK Sbjct: 239 QEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKH 298 Query: 550 VIHYNDL 570 + +N L Sbjct: 299 TVEFNQL 305
>CNOT6_XENLA (Q5BJ41) CCR4-NOT transcription complex subunit 6 (EC 3.1.-.-)| (Cytoplasmic deadenylase) Length = 552 Score = 75.1 bits (183), Expect = 1e-13 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%) Frame = +1 Query: 223 EPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCI 402 EPD F ++ YN+L Y + + PS +L W R KA++ E+ S NAD++ + Sbjct: 174 EPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISL 233 Query: 403 QEL--DEYETFYRKNMESSGYSSIYVQRSGDKR---------DGCGIFYKPKSVELLQKE 549 QE+ ++Y +F+ ++ GY+ + +S + DGC IF+K + L+QK Sbjct: 234 QEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKH 293 Query: 550 VIHYNDL 570 + +N L Sbjct: 294 TVEFNQL 300
>NGL2_YEAST (Q03264) RNA exonuclease NGL2 (EC 3.1.-.-) (Carbon catabolite| repressor protein 4 homolog) Length = 515 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Frame = +1 Query: 244 GHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCIQELD--E 417 G +F+L++YN LAQ ++ FP S A LKW RSK +L E K +N+D++C+QE+D + Sbjct: 109 GFRFKLMTYNCLAQALIRRKLFPDSGDA-LKWYRRSKVLLNEFKYYNSDVICLQEIDHIQ 167 Query: 418 YETFYRKNMESSGYSSIYVQRSGDKRDGCGIFYKPKSVELLQKEVIHYN 564 +++F++ GY Y R+ K G I ++ + + K +I Y+ Sbjct: 168 FQSFWKDEFSKLGYDGQY-YRNATKNHGVAIMWRRELFHQVDKMLIDYD 215
>ANGE1_HUMAN (Q9UNK9) Angel homolog 1| Length = 670 Score = 68.6 bits (166), Expect = 1e-11 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Frame = +1 Query: 196 FSPLPTARSEPDAGADGHQFRLVSYNILAQVYVK--SAFFPHSPSASLKWKARSKAVLTE 369 FS P A+ QF L+SYNILAQ ++ S + H L W R ++ E Sbjct: 226 FSTQPDAQGLKAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQE 285 Query: 370 LKSFNADLMCIQEL--DEYETFYRKNMESSGYSSIYVQRSGDKRDGCGIFYKPKSVELLQ 543 + ++ D++C+QE+ D Y ++ G++ Y +R+G K DGC + YKP LL Sbjct: 286 FQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLC 345 Query: 544 KEVIHY 561 + Y Sbjct: 346 ASPVEY 351
>CCR4_YEAST (P31384) Glucose-repressible alcohol dehydrogenase transcriptional| effector (EC 3.1.-.-) (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4) Length = 837 Score = 63.5 bits (153), Expect = 4e-10 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 11/115 (9%) Frame = +1 Query: 253 FRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCIQELDE--YET 426 F ++SYN L Q Y + ++PS +L W R + +L S+++DL+C+QE++ +E Sbjct: 505 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQLLSYDSDLLCLQEVESKTFEE 564 Query: 427 FYRKNMESSGYSSIY---------VQRSGDKRDGCGIFYKPKSVELLQKEVIHYN 564 ++ ++ GY+ I+ + K DGC IF+K +L+ K+ + ++ Sbjct: 565 YWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFS 619
>NGL3_YEAST (Q03210) Probable RNA exonuclease NGL3 (EC 3.1.-.-)| Length = 505 Score = 62.8 bits (151), Expect = 7e-10 Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Frame = +1 Query: 241 DGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTELKSFNADLMCIQELDEY 420 D ++++YN LAQ ++ FFP S A LKW RSK ++ ELK + D++ +QE+D Sbjct: 105 DSLDVKIMTYNTLAQTLIRRDFFPESGPA-LKWHKRSKVLVHELKKYRPDVVSLQEVDYN 163 Query: 421 E-TFYRKNMESSGYSSIYVQRSGDKRDGCGIFYKPKSVELLQKEVIHYNDLV 573 E F+++N G+ I+ + G K G + + K +L ++ Y++++ Sbjct: 164 ELNFWQENFHKLGFDVIFKRHEG-KTHGLLVAWNNKKFQLDNDWMLDYDNIL 214
>ANGEL_DROME (Q24239) Protein angel (Angel 39) (ANG39)| Length = 354 Score = 59.7 bits (143), Expect = 6e-09 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 9/120 (7%) Frame = +1 Query: 235 GADGHQ---FRLVSYNILAQVYVKSAFFPHS--PSASLKWKARSKAVLTELKSFNADLMC 399 G D H+ F++VSYNILAQ + F + P L W+ R + +L EL + D++C Sbjct: 59 GRDPHKCSSFKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILC 118 Query: 400 IQEL--DEYETFYRKNMESSG--YSSIYVQRSGDKRDGCGIFYKPKSVELLQKEVIHYND 567 +QE+ D ++ +G + +Y +++G + DGC I Y ELL + + D Sbjct: 119 LQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKTGCRTDGCAIVYDSSKFELLDHQAVELYD 178
>NOCT_XENLA (P79942) Nocturnin (Rhythmic message 1) (RM1)| Length = 388 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Frame = +1 Query: 253 FRLVSYNILAQVYVKSAF-FPHSPSASLKWKARSKAVLTELKSFNADLMCIQELDEYETF 429 FR++ +NILAQ + F P +LKW+ R +L E+ + D++C+QE+D Y Sbjct: 100 FRVMQWNILAQALGEGKDNFIMCPMEALKWEERKYLILEEILMYQPDVLCLQEVDHYFDT 159 Query: 430 YRKNMESSGYSSIYVQR---------SGDKRDGCGIFYKPKSVELLQKEVI 555 ++ + GY ++ + + DGC +F+ +L+ I Sbjct: 160 FQPILSRLGYQCTFLAKPWSPCLDVEHNNGPDGCALFFLQDRFQLVNSAKI 210
>NOCT_MOUSE (O35710) Nocturnin (CCR4 protein homolog)| Length = 429 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%) Frame = +1 Query: 229 DAGADGHQFRLVSYNILAQVYVKSAF-FPHSPSASLKWKARSKAVLTELKSFNADLMCIQ 405 D + R++ +NILAQ + F P +LKW+ R +L E+ ++ D++C+Q Sbjct: 133 DCSSSHSPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQ 192 Query: 406 ELDEYETFYRKNMESSGYSSIYVQR---------SGDKRDGCGIFYKPKSVELL 540 E+D Y ++ + GY + + + DGC +F+ +L+ Sbjct: 193 EVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLI 246
>NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)| Length = 431 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%) Frame = +1 Query: 256 RLVSYNILAQVYVKSAF-FPHSPSASLKWKARSKAVLTELKSFNADLMCIQELDEYETFY 432 R++ +NILAQ + F P +LKW+ R +L E+ ++ D++C+QE+D Y + Sbjct: 144 RVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTF 203 Query: 433 RKNMESSGYSSIYVQR---------SGDKRDGCGIFYKPKSVELL 540 + + GY + + + DGC +F+ +L+ Sbjct: 204 QPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLV 248
>NOCT_RAT (Q9ET55) Nocturnin (CCR4 protein homolog) (Fragment)| Length = 253 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 10/114 (8%) Frame = +1 Query: 229 DAGADGHQFRLVSYNILAQVYVKSAF-FPHSPSASLKWKARSKAVLTELKSFNADLMCIQ 405 D + R++ +NILAQ + F P +LKW+ R +L E+ ++ D++C+Q Sbjct: 59 DCSSSHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQ 118 Query: 406 ELDEYETFYRKNMESSGYSSIYVQR---------SGDKRDGCGIFYKPKSVELL 540 E+D Y + + GY + + + DGC +F+ +L+ Sbjct: 119 EVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLI 172
>NGL1_YEAST (Q08213) RNA exonuclease NGL1 (EC 3.1.-.-)| Length = 363 Score = 46.6 bits (109), Expect = 5e-05 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%) Frame = +1 Query: 250 QFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAVLTEL-KSFNADLMCIQELD--EY 420 +F L++YN+L+ Y+ + + W R + + EL +F AD+MC+QE+ +Y Sbjct: 26 RFTLLTYNMLSPSYMWPQVYTYVAEPYKNWSYRHRLLEKELLNTFKADIMCLQEMTARDY 85 Query: 421 ETFYRKNM-ESSGYSSIYVQRSGDK--------RDGCGIFYKPKSVELLQKEVIHYNDLV 573 E ++ ++ Y S ++ ++ K DG IFY + + I+ N L+ Sbjct: 86 EDYWHDSIGVDVNYGSKFISKTPPKYWKKPVKDMDGVSIFYNLAKFDFISSSGIYLNQLL 145
>MMP13_BOVIN (O77656) Collagenase 3 precursor (EC 3.4.24.-) (Matrix| metalloproteinase-13) (MMP-13) Length = 471 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +1 Query: 202 PLPTARSEPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPSASLKWKARSKAV--LTELK 375 PLP+ D + QF A+ Y+KS ++P +P+ LK A S + L E++ Sbjct: 21 PLPSDGDSEDLSEEDFQF--------AESYLKSYYYPQNPAGILKKTAASSVIDRLREMQ 72 Query: 376 SF 381 SF Sbjct: 73 SF 74
>LEU3_BACTN (Q8A6M0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 353 Score = 29.3 bits (64), Expect = 8.9 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Frame = +1 Query: 157 ICKRR----MSAQAEPRFSPLPTARSEPDAGADGHQFRLVSYNILAQVYVKSAFFPHSPS 324 +CK SA +P+F PTA+ P+ G + +L + + V SP Sbjct: 62 VCKNADAVLFSAVGDPKFDNDPTAKVRPEQGLLAMRKKLGLFANIRPVQTFKCLIHKSP- 120 Query: 325 ASLKWKARSKAVLTELKSFNADLMCIQELDEYETFYRKNMES-SGYSSIYVQR 480 +A L E NAD +CI+EL F K ++ Y + Y R Sbjct: 121 --------LRAELVE----NADFICIRELTGGMYFGEKYQDNDKAYDTNYYTR 161 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,180,853 Number of Sequences: 219361 Number of extensions: 1521970 Number of successful extensions: 4452 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4441 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
