ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475179.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 444 bits (224), Expect = e-121 Identities = 404/464 (87%) Strand = Plus / Plus Query: 114 cagctcgcctcctccctgcggccggcgcctccccctccgcccgatttgcaagcggcggat 173 |||||| |||||||||||||||| || |||||| || ||| ||||||||||||||||| Sbjct: 51 cagctcccctcctccctgcggcccccgtctccccttcgtcccaatttgcaagcggcggat 110 Query: 174 gagcgcgcaggcggagcccaggttctcccctctccccacagcgcggtccgaacctgatgc 233 |||| | |||||| ||||||| ||| ||||||||||||| |||| |||||| | ||||| Sbjct: 111 gagcacccaggcgcagcccagtttcgcccctctccccacggcgcaatccgaatccgatgc 170 Query: 234 cggggcagacgggcaccagttccggctggtttcctataatatactggcccaggtttatgt 293 ||||||| ||| |||||||||||||||||||||| || || |||||||||||||||| Sbjct: 171 aggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggtttatgt 230 Query: 294 aaagagcgcgttttttcctcattctccatccgcttctctcaagtggaaagctcgttccaa 353 ||||| |||||||| || ||||||||||| || | ||||||||||||| |||| || || Sbjct: 231 gaagagtgcgtttttcccgcattctccatctgcctgtctcaagtggaaaactcggtctaa 290 Query: 354 agctgttctaacagaactcaagagttttaatgctgacctcatgtgcatacaggagttgga 413 |||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 291 agctgttctatcagaactcaagagcttcgaagctgacctcatgtgcatacaggagttgga 350 Query: 414 tgaatatgagacattctataggaaaaacatggaaagttctggatattcaagtatttatgt 473 ||| ||||| || ||||| | |||||||||||| | ||||||||||||||||||||| | Sbjct: 351 tgagtatgataccttctacaagaaaaacatggagaattctggatattcaagtatttacat 410 Query: 474 ccagcgatctggggacaaacgggatggatgtggtatattctataaaccaaaaagcgtgga 533 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 411 tcaacgatctggggacaaacgggatggatgtggcatattctataaaccaaaaagcatgga 470 Query: 534 actgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 471 actggtccagaaggaagtactacattacaatgatttagtggaaa 514
>dbj|AK104776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B12, full insert sequence Length = 1430 Score = 444 bits (224), Expect = e-121 Identities = 404/464 (87%) Strand = Plus / Plus Query: 114 cagctcgcctcctccctgcggccggcgcctccccctccgcccgatttgcaagcggcggat 173 |||||| |||||||||||||||| || |||||| || ||| ||||||||||||||||| Sbjct: 200 cagctcccctcctccctgcggcccccgtctccccttcgtcccaatttgcaagcggcggat 259 Query: 174 gagcgcgcaggcggagcccaggttctcccctctccccacagcgcggtccgaacctgatgc 233 |||| | |||||| ||||||| ||| ||||||||||||| |||| |||||| | ||||| Sbjct: 260 gagcacccaggcgcagcccagtttcgcccctctccccacggcgcaatccgaatccgatgc 319 Query: 234 cggggcagacgggcaccagttccggctggtttcctataatatactggcccaggtttatgt 293 ||||||| ||| |||||||||||||||||||||| || || |||||||||||||||| Sbjct: 320 aggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggtttatgt 379 Query: 294 aaagagcgcgttttttcctcattctccatccgcttctctcaagtggaaagctcgttccaa 353 ||||| |||||||| || ||||||||||| || | ||||||||||||| |||| || || Sbjct: 380 gaagagtgcgtttttcccgcattctccatctgcctgtctcaagtggaaaactcggtctaa 439 Query: 354 agctgttctaacagaactcaagagttttaatgctgacctcatgtgcatacaggagttgga 413 |||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 440 agctgttctatcagaactcaagagcttcgaagctgacctcatgtgcatacaggagttgga 499 Query: 414 tgaatatgagacattctataggaaaaacatggaaagttctggatattcaagtatttatgt 473 ||| ||||| || ||||| | |||||||||||| | ||||||||||||||||||||| | Sbjct: 500 tgagtatgataccttctacaagaaaaacatggagaattctggatattcaagtatttacat 559 Query: 474 ccagcgatctggggacaaacgggatggatgtggtatattctataaaccaaaaagcgtgga 533 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 560 tcaacgatctggggacaaacgggatggatgtggcatattctataaaccaaaaagcatgga 619 Query: 534 actgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 620 actggtccagaaggaagtactacattacaatgatttagtggaaa 663
>dbj|AK098939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043C01, full insert sequence Length = 1540 Score = 444 bits (224), Expect = e-121 Identities = 404/464 (87%) Strand = Plus / Plus Query: 114 cagctcgcctcctccctgcggccggcgcctccccctccgcccgatttgcaagcggcggat 173 |||||| |||||||||||||||| || |||||| || ||| ||||||||||||||||| Sbjct: 172 cagctcccctcctccctgcggcccccgtctccccttcgtcccaatttgcaagcggcggat 231 Query: 174 gagcgcgcaggcggagcccaggttctcccctctccccacagcgcggtccgaacctgatgc 233 |||| | |||||| ||||||| ||| ||||||||||||| |||| |||||| | ||||| Sbjct: 232 gagcacccaggcgcagcccagtttcgcccctctccccacggcgcaatccgaatccgatgc 291 Query: 234 cggggcagacgggcaccagttccggctggtttcctataatatactggcccaggtttatgt 293 ||||||| ||| |||||||||||||||||||||| || || |||||||||||||||| Sbjct: 292 aggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggtttatgt 351 Query: 294 aaagagcgcgttttttcctcattctccatccgcttctctcaagtggaaagctcgttccaa 353 ||||| |||||||| || ||||||||||| || | ||||||||||||| |||| || || Sbjct: 352 gaagagtgcgtttttcccgcattctccatctgcctgtctcaagtggaaaactcggtctaa 411 Query: 354 agctgttctaacagaactcaagagttttaatgctgacctcatgtgcatacaggagttgga 413 |||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 412 agctgttctatcagaactcaagagcttcgaagctgacctcatgtgcatacaggagttgga 471 Query: 414 tgaatatgagacattctataggaaaaacatggaaagttctggatattcaagtatttatgt 473 ||| ||||| || ||||| | |||||||||||| | ||||||||||||||||||||| | Sbjct: 472 tgagtatgataccttctacaagaaaaacatggagaattctggatattcaagtatttacat 531 Query: 474 ccagcgatctggggacaaacgggatggatgtggtatattctataaaccaaaaagcgtgga 533 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 532 tcaacgatctggggacaaacgggatggatgtggcatattctataaaccaaaaagcatgga 591 Query: 534 actgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 592 actggtccagaaggaagtactacattacaatgatttagtggaaa 635
>dbj|AK060960.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H11, full insert sequence Length = 1430 Score = 444 bits (224), Expect = e-121 Identities = 404/464 (87%) Strand = Plus / Plus Query: 114 cagctcgcctcctccctgcggccggcgcctccccctccgcccgatttgcaagcggcggat 173 |||||| |||||||||||||||| || |||||| || ||| ||||||||||||||||| Sbjct: 200 cagctcccctcctccctgcggcccccgtctccccttcgtcccaatttgcaagcggcggat 259 Query: 174 gagcgcgcaggcggagcccaggttctcccctctccccacagcgcggtccgaacctgatgc 233 |||| | |||||| ||||||| ||| ||||||||||||| |||| |||||| | ||||| Sbjct: 260 gagcacccaggcgcagcccagtttcgcccctctccccacggcgcaatccgaatccgatgc 319 Query: 234 cggggcagacgggcaccagttccggctggtttcctataatatactggcccaggtttatgt 293 ||||||| ||| |||||||||||||||||||||| || || |||||||||||||||| Sbjct: 320 aggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggtttatgt 379 Query: 294 aaagagcgcgttttttcctcattctccatccgcttctctcaagtggaaagctcgttccaa 353 ||||| |||||||| || ||||||||||| || | ||||||||||||| |||| || || Sbjct: 380 gaagagtgcgtttttcccgcattctccatctgcctgtctcaagtggaaaactcggtctaa 439 Query: 354 agctgttctaacagaactcaagagttttaatgctgacctcatgtgcatacaggagttgga 413 |||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||| Sbjct: 440 agctgttctatcagaactcaagagcttcgaagctgacctcatgtgcatacaggagttgga 499 Query: 414 tgaatatgagacattctataggaaaaacatggaaagttctggatattcaagtatttatgt 473 ||| ||||| || ||||| | |||||||||||| | ||||||||||||||||||||| | Sbjct: 500 tgagtatgataccttctacaagaaaaacatggagaattctggatattcaagtatttacat 559 Query: 474 ccagcgatctggggacaaacgggatggatgtggtatattctataaaccaaaaagcgtgga 533 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct: 560 tcaacgatctggggacaaacgggatggatgtggcatattctataaaccaaaaagcatgga 619 Query: 534 actgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 620 actggtccagaaggaagtactacattacaatgatttagtggaaa 663
>dbj|AK122043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113K20, full insert sequence Length = 1058 Score = 210 bits (106), Expect = 4e-51 Identities = 166/186 (89%) Strand = Plus / Plus Query: 336 gtggaaagctcgttccaaagctgttctaacagaactcaagagttttaatgctgacctcat 395 ||||||| |||| || |||||||||||| ||||||||||||| || | ||||||||||| Sbjct: 873 gtggaaaactcggtctaaagctgttctatcagaactcaagagcttcgaagctgacctcat 932 Query: 396 gtgcatacaggagttggatgaatatgagacattctataggaaaaacatggaaagttctgg 455 ||||||||||||||||||||| ||||| || ||||| | |||||||||||| | |||||| Sbjct: 933 gtgcatacaggagttggatgagtatgataccttctacaagaaaaacatggagaattctgg 992 Query: 456 atattcaagtatttatgtccagcgatctggggacaaacgggatggatgtggtatattcta 515 ||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||| Sbjct: 993 atattcaagtatttacattcaacgatctggggacaaacgggatggatgtggcatattcta 1052 Query: 516 taaacc 521 |||||| Sbjct: 1053 taaacc 1058 Score = 178 bits (90), Expect = 1e-41 Identities = 180/210 (85%) Strand = Plus / Plus Query: 114 cagctcgcctcctccctgcggccggcgcctccccctccgcccgatttgcaagcggcggat 173 |||||| |||||||||||||||| || |||||| || ||| ||||||||||||||||| Sbjct: 159 cagctcccctcctccctgcggcccccgtctccccttcgtcccaatttgcaagcggcggat 218 Query: 174 gagcgcgcaggcggagcccaggttctcccctctccccacagcgcggtccgaacctgatgc 233 |||| | |||||| ||||||| ||| ||||||||||||| |||| |||||| | ||||| Sbjct: 219 gagcacccaggcgcagcccagtttcgcccctctccccacggcgcaatccgaatccgatgc 278 Query: 234 cggggcagacgggcaccagttccggctggtttcctataatatactggcccaggtttatgt 293 ||||||| ||| |||||||||||||||||||||| || || |||||||||||||||| Sbjct: 279 aggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggtttatgt 338 Query: 294 aaagagcgcgttttttcctcattctccatc 323 ||||| |||||||| || ||||||||||| Sbjct: 339 gaagagtgcgtttttcccgcattctccatc 368
>gb|AY112518.1| Zea mays CL340_1 mRNA sequence Length = 1575 Score = 192 bits (97), Expect = 9e-46 Identities = 200/236 (84%) Strand = Plus / Plus Query: 331 ctcaagtggaaagctcgttccaaagctgttctaacagaactcaagagttttaatgctgac 390 |||||||||||| |||| || |||| |||| |||||||| ||||| ||| |||||||| Sbjct: 242 ctcaagtggaaatctcgatcgggagctattcttacagaactaaagagctttgatgctgac 301 Query: 391 ctcatgtgcatacaggagttggatgaatatgagacattctataggaaaaacatggaaagt 450 ||||||||||||||||||||||||||||||| || ||||||| | |||||||| Sbjct: 302 ttcatgtgcatacaggagttggatgaatatgataccttctataagnnnnncatggaaaac 361 Query: 451 tctggatattcaagtatttatgtccagcgatctggggacaaacgggatggatgtggtata 510 |||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||| Sbjct: 362 tctggatattcaagtatttacattcagcgatctggagacaaacgagatggctgtggtata 421 Query: 511 ttctataaaccaaaaagcgtggaactgttacagaaggaagtaatacactacaatga 566 ||||||||||| ||||| | |||||| | ||||| |||||||||| |||||||| Sbjct: 422 ttctataaacctaaaagtgcagaactggtgcagaaagaagtaatactgtacaatga 477 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 160 tgcaagcggcggatgagcgcgcaggcggagcccaggttctcccctctccc 209 |||||||||||||||||| ||| |||| | |||||||| |||||||||| Sbjct: 65 tgcaagcggcggatgagcacgctggcgcatcccaggtttgcccctctccc 114 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Plus Query: 248 accagttccggctggtttcctataatatactggcccaggtttatgtaaagag 299 |||||||||||||||| || || || || |||||||||||||||| ||||| Sbjct: 159 accagttccggctggtctcttacaacatcttggcccaggtttatgttaagag 210
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 153 bits (77), Expect = 8e-34 Identities = 113/125 (90%) Strand = Plus / Minus Query: 403 caggagttggatgaatatgagacattctataggaaaaacatggaaagttctggatattca 462 |||||||||||||| ||||| || ||||| | |||||||||||| | ||||||||||||| Sbjct: 176904 caggagttggatgagtatgataccttctacaagaaaaacatggagaattctggatattca 176845 Query: 463 agtatttatgtccagcgatctggggacaaacgggatggatgtggtatattctataaacca 522 |||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 176844 agtatttacattcaacgatctggggacaaacgggatggatgtggcatattctataaacca 176785 Query: 523 aaaag 527 ||||| Sbjct: 176784 aaaag 176780 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 336 gtggaaagctcgttccaaagctgttctaacagaactcaagagttttaatgctgacctcat 395 ||||||| |||| || |||||||||||| ||||||||||||| || | ||||||||||| Sbjct: 177544 gtggaaaactcggtctaaagctgttctatcagaactcaagagcttcgaagctgacctcat 177485 Query: 396 gtgcatacagg 406 ||||||||||| Sbjct: 177484 gtgcatacagg 177474 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 530 tggaactgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||||||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 176640 tggaactggtccagaaggaagtactacattacaatgatttagtggaaa 176593
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 153 bits (77), Expect = 8e-34 Identities = 113/125 (90%) Strand = Plus / Minus Query: 403 caggagttggatgaatatgagacattctataggaaaaacatggaaagttctggatattca 462 |||||||||||||| ||||| || ||||| | |||||||||||| | ||||||||||||| Sbjct: 9192 caggagttggatgagtatgataccttctacaagaaaaacatggagaattctggatattca 9133 Query: 463 agtatttatgtccagcgatctggggacaaacgggatggatgtggtatattctataaacca 522 |||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 9132 agtatttacattcaacgatctggggacaaacgggatggatgtggcatattctataaacca 9073 Query: 523 aaaag 527 ||||| Sbjct: 9072 aaaag 9068 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 336 gtggaaagctcgttccaaagctgttctaacagaactcaagagttttaatgctgacctcat 395 ||||||| |||| || |||||||||||| ||||||||||||| || | ||||||||||| Sbjct: 9832 gtggaaaactcggtctaaagctgttctatcagaactcaagagcttcgaagctgacctcat 9773 Query: 396 gtgcatacagg 406 ||||||||||| Sbjct: 9772 gtgcatacagg 9762 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 157 atttgcaagcggcggatgagcgcgcaggcggagcccaggttctcccctctccccacagcg 216 ||||||||||||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| Sbjct: 10777 atttgcaagcggcggatgagcacccaggcgcagcccagtttcgcccctctccccacggcg 10718 Query: 217 c 217 | Sbjct: 10717 c 10717 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 283 caggtttatgtaaagagcgcgttttttcctcattctccatccgcttctctcaagt 337 ||||||||||| ||||| |||||||| || ||||||||||| || | |||||||| Sbjct: 10377 caggtttatgtgaagagtgcgtttttcccgcattctccatctgcctgtctcaagt 10323 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 235 ggggcagacgggcaccagttccggctggtttcctataatatactggcccaggt 287 ||||||| ||| |||||||||||||||||||||| || || |||||||||| Sbjct: 10560 ggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggt 10508 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 530 tggaactgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||||||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 8928 tggaactggtccagaaggaagtactacattacaatgatttagtggaaa 8881
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 153 bits (77), Expect = 8e-34 Identities = 113/125 (90%) Strand = Plus / Minus Query: 403 caggagttggatgaatatgagacattctataggaaaaacatggaaagttctggatattca 462 |||||||||||||| ||||| || ||||| | |||||||||||| | ||||||||||||| Sbjct: 18703789 caggagttggatgagtatgataccttctacaagaaaaacatggagaattctggatattca 18703730 Query: 463 agtatttatgtccagcgatctggggacaaacgggatggatgtggtatattctataaacca 522 |||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 18703729 agtatttacattcaacgatctggggacaaacgggatggatgtggcatattctataaacca 18703670 Query: 523 aaaag 527 ||||| Sbjct: 18703669 aaaag 18703665 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 336 gtggaaagctcgttccaaagctgttctaacagaactcaagagttttaatgctgacctcat 395 ||||||| |||| || |||||||||||| ||||||||||||| || | ||||||||||| Sbjct: 18704429 gtggaaaactcggtctaaagctgttctatcagaactcaagagcttcgaagctgacctcat 18704370 Query: 396 gtgcatacagg 406 ||||||||||| Sbjct: 18704369 gtgcatacagg 18704359 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 157 atttgcaagcggcggatgagcgcgcaggcggagcccaggttctcccctctccccacagcg 216 ||||||||||||||||||||| | |||||| ||||||| ||| ||||||||||||| ||| Sbjct: 18705374 atttgcaagcggcggatgagcacccaggcgcagcccagtttcgcccctctccccacggcg 18705315 Query: 217 c 217 | Sbjct: 18705314 c 18705314 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 283 caggtttatgtaaagagcgcgttttttcctcattctccatccgcttctctcaagt 337 ||||||||||| ||||| |||||||| || ||||||||||| || | |||||||| Sbjct: 18704974 caggtttatgtgaagagtgcgtttttcccgcattctccatctgcctgtctcaagt 18704920 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 235 ggggcagacgggcaccagttccggctggtttcctataatatactggcccaggt 287 ||||||| ||| |||||||||||||||||||||| || || |||||||||| Sbjct: 18705157 ggggcagctgggtaccagttccggctggtttcctacaacatcttggcccaggt 18705105 Score = 48.1 bits (24), Expect = 0.033 Identities = 42/48 (87%) Strand = Plus / Minus Query: 530 tggaactgttacagaaggaagtaatacactacaatgacttggtggaaa 577 |||||||| | |||||||||||| |||| |||||||| || ||||||| Sbjct: 18703525 tggaactggtccagaaggaagtactacattacaatgatttagtggaaa 18703478
>gb|BC085311.1| Mus musculus huntingtin interacting protein 2, mRNA (cDNA clone MGC:103385 IMAGE:30148009), complete cds Length = 971 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 81 ctcttcctccgccgccgcctcctccct 55
>ref|NM_016786.2| Mus musculus huntingtin interacting protein 2 (Hip2), mRNA Length = 4795 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 146 ctcttcctccgccgccgcctcctccct 120
>gb|AC136513.2| Mus musculus BAC clone RP23-477N9 from chromosome 5, complete sequence Length = 188517 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 4607 ctcttcctccgccgccgcctcctccct 4633
>emb|AL139230.25| Human DNA sequence from clone RP11-182M20 on chromosome 13 Contains the 5' end of the TBC1D4 gene for TBC1 domain family, member 4 (KIAA0603), a novel gene and a CpG island, complete sequence Length = 133362 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 501 atgtggtatattctataaaccaaaaag 527 |||||||| |||||||||||||||||| Sbjct: 7252 atgtggtacattctataaaccaaaaag 7278
>dbj|AK139564.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020004N20 product:huntingtin interacting protein 2, full insert sequence Length = 1634 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 172 ctcttcctccgccgccgcctcctccct 146
>dbj|AK166647.1| Mus musculus 1 cell embryo 1 cell cDNA, RIKEN full-length enriched library, clone:I0C0045H24 product:huntingtin interacting protein 2, full insert sequence Length = 1814 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 64 ctcttcctccgccgccgcctcctccct 38
>dbj|AK162142.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420435N04 product:huntingtin interacting protein 2, full insert sequence Length = 1545 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 96 ctcttcctccgccgccgcctcctccct 70
>dbj|AK160728.1| Mus musculus 12 days embryo head cDNA, RIKEN full-length enriched library, clone:3010095B19 product:huntingtin interacting protein 2, full insert sequence Length = 971 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 115 ctcttcctccgccgccgcctcctccct 89
>dbj|AK035371.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530026F20 product:huntingtin interacting protein 2, full insert sequence Length = 1485 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 140 ctcttcctccgccgccgcctcctccct 114
>dbj|AK031055.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5832447D15 product:huntingtin interacting protein 2, full insert sequence Length = 3216 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 96 ctcttcctccgccgccgcctcctccct 70
>dbj|AK018366.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030447B05 product:huntingtin interacting protein 2, full insert sequence Length = 1601 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 129 ctcttcctccgccgccgcctcctccct 103
>dbj|AK048194.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130040A15 product:huntingtin interacting protein 2, full insert sequence Length = 4795 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 146 ctcttcctccgccgccgcctcctccct 120
>gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, complete sequence Length = 189091 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 11475 ctcttcctccgccgccgcctcctccct 11449
>dbj|AB011081.1| Mus musculus mRNA for huntingtin interacting protein-2, complete cds Length = 955 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcctcctccct 105 ||||||||| ||||||||||||||||| Sbjct: 93 ctcttcctccgccgccgcctcctccct 67
>gb|AC003065.2| Homo sapiens Chromosome 2p13 BAC Clone h173, complete sequence Length = 90831 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 507 tatattctataaaccaaaaagc 528 |||||||||||||||||||||| Sbjct: 53570 tatattctataaaccaaaaagc 53549
>gb|AC006544.19| Homo sapiens chromosome 2 clone bac91a19 map 2p13, complete sequence Length = 234523 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 tatattctataaaccaaaaagc 528 |||||||||||||||||||||| Sbjct: 73607 tatattctataaaccaaaaagc 73628
>gb|AC006543.7| Homo sapiens chromosome 2 clone bac172k1 map 2p13, complete sequence Length = 126228 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 tatattctataaaccaaaaagc 528 |||||||||||||||||||||| Sbjct: 3864 tatattctataaaccaaaaagc 3885
>gb|AC005033.1| Homo sapiens BAC clone RP11-140K4 from 2, complete sequence Length = 113843 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 507 tatattctataaaccaaaaagc 528 |||||||||||||||||||||| Sbjct: 57509 tatattctataaaccaaaaagc 57488
>ref|XM_527244.1| PREDICTED: Pan troglodytes similar to SRY (sex determining region Y)-box 4; SRY-related HMG-box gene 4; ecotropic viral integration site 16 (LOC471866), mRNA Length = 1425 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 427 tcctcggccgccgcctcctcc 447
>ref|NM_003107.2| Homo sapiens SRY (sex determining region Y)-box 4 (SOX4), mRNA Length = 4912 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 1221 tcctcggccgccgcctcctcc 1241
>gb|AC116494.8| Mus musculus chromosome 7, clone RP24-291G23, complete sequence Length = 201187 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gcttccctccctctcttcctc 87 ||||||||||||||||||||| Sbjct: 23146 gcttccctccctctcttcctc 23166
>gb|BC072668.1| Homo sapiens SRY (sex determining region Y)-box 4, mRNA (cDNA clone MGC:71240 IMAGE:6584346), complete cds Length = 2107 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 1041 tcctcggccgccgcctcctcc 1061
>ref|NM_021143.1| Homo sapiens zinc finger protein 20 (ZNF20), mRNA Length = 2316 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 256 taggaaaaacatggaaagttc 276
>gb|AC154597.2| Mus musculus BAC clone RP23-355G2 from chromosome 14, complete sequence Length = 201544 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gcttccctccctctcttcctc 87 ||||||||||||||||||||| Sbjct: 104851 gcttccctccctctcttcctc 104871
>gb|AC164408.4| Mus musculus chromosome 3, clone RP23-384A11, complete sequence Length = 202604 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 45203 tcctcggccgccgcctcctcc 45223
>gb|BC036714.2| Homo sapiens cDNA clone IMAGE:4846514, partial cds Length = 2241 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 280 taggaaaaacatggaaagttc 300
>emb|AL353680.8| Human DNA sequence from clone RP11-252M21 on chromosome 13 Contains a novel FLJ31073 containing gene, six novel genes and a CpG island, complete sequence Length = 176930 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 aactgttacagaaggaagtaa 553 ||||||||||||||||||||| Sbjct: 115901 aactgttacagaaggaagtaa 115921
>emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chromosome 6 Contains the SOX4 gene for SRY (sex determining region Y)-box 4, a novel pseudogene and CpG islands, complete sequence Length = 128728 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 10659 tcctcggccgccgcctcctcc 10679
>emb|X70683.1|HSSOX4M H.sapiens mRNA for SOX-4 protein Length = 2797 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 777 tcctcggccgccgcctcctcc 797
>emb|AL080125.1|HSM800633 Homo sapiens mRNA; cDNA DKFZp572P0920 (from clone DKFZp572P0920) Length = 2188 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 234 taggaaaaacatggaaagttc 254
>gb|BC045814.1| Homo sapiens zinc finger protein 20 (KOX 13), mRNA (cDNA clone MGC:51138 IMAGE:4830061), complete cds Length = 2145 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 197 taggaaaaacatggaaagttc 217
>gb|AC131025.1| Homo sapiens chromosome 5 clone RP11-394O4, complete sequence Length = 179633 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 310 cctcattctccatccgcttctctca 334 |||||||||||||| |||||||||| Sbjct: 166935 cctcattctccatctgcttctctca 166911
>gb|AC119840.12| Mus musculus chromosome 3, clone RP24-112E5, complete sequence Length = 206159 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcctcggccgccgcctcctcc 103 ||||||||||||||||||||| Sbjct: 6685 tcctcggccgccgcctcctcc 6705
>dbj|AK096560.1| Homo sapiens cDNA FLJ39241 fis, clone OCBBF2008116, moderately similar to ZINC FINGER PROTEIN ZFP-36 Length = 2234 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 719 taggaaaaacatggaaagttc 739
>dbj|AK023094.1| Homo sapiens cDNA FLJ13032 fis, clone NT2RP3001120, moderately similar to ZINC FINGER PROTEIN 136 Length = 2316 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 256 taggaaaaacatggaaagttc 276
>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence Length = 164550 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 310 cctcattctccatccgcttctctca 334 |||||||||||||| |||||||||| Sbjct: 69977 cctcattctccatctgcttctctca 69953
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 cggcggatgagcgcgcaggcg 186 ||||||||||||||||||||| Sbjct: 4801071 cggcggatgagcgcgcaggcg 4801051
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ttccctccctctcttcctcgg 89 ||||||||||||||||||||| Sbjct: 15002453 ttccctccctctcttcctcgg 15002433
>gb|AC011752.2| Homo sapiens BAC clone RP11-531P14 from 2, complete sequence Length = 121227 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gcttccctccctctcttcctc 87 ||||||||||||||||||||| Sbjct: 76604 gcttccctccctctcttcctc 76624 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 76725 cttccctccctctcttcctc 76744
>gb|AC093915.2| Homo sapiens BAC clone RP11-785G17 from 2, complete sequence Length = 120416 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 gggcggcttccctccctctcttcct 86 |||| |||||||||||||||||||| Sbjct: 67877 gggctgcttccctccctctcttcct 67853
>gb|AC022415.5|AC022415 Homo sapiens chromosome 19 clone CTC-359D24, complete sequence Length = 180510 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 taggaaaaacatggaaagttc 452 ||||||||||||||||||||| Sbjct: 128410 taggaaaaacatggaaagttc 128390
>gb|AC078991.21| Homo sapiens Xp BAC RP11-459A10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169819 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gcttctctcaagtggaaagct 345 ||||||||||||||||||||| Sbjct: 158174 gcttctctcaagtggaaagct 158154
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0533E11 Length = 150678 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ttccctccctctcttcctcgg 89 ||||||||||||||||||||| Sbjct: 8234 ttccctccctctcttcctcgg 8214
>dbj|AP005654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0080M22 Length = 140743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 ttccctccctctcttcctcgg 89 ||||||||||||||||||||| Sbjct: 116311 ttccctccctctcttcctcgg 116291
>emb|BX005312.20| Zebrafish DNA sequence from clone DKEY-79N12 in linkage group 18, complete sequence Length = 207484 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gcttccctccctctcttcctc 87 ||||||||||||||||||||| Sbjct: 166662 gcttccctccctctcttcctc 166642
>gb|AC167117.5| Mus musculus chromosome 1, clone RP24-73D23, complete sequence Length = 166651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 6270 cttccctccctctcttcctc 6289
>gb|AC163612.3| Mus musculus BAC clone RP23-89N5 from chromosome 16, complete sequence Length = 207953 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 181005 cttccctccctctcttcctc 181024
>gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome 14, complete sequence Length = 203649 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 84027 cttccctccctctcttcctc 84008
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 73 ctccctctcttcctcggccgccgcctcctccc 104 ||||||||||||||| || |||||||||||| Sbjct: 12902 ctccctctcttcctccccctccgcctcctccc 12871
>gb|BC094356.1| Mus musculus RIKEN cDNA 1500009C09 gene, mRNA (cDNA clone IMAGE:6819610) Length = 1402 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 992 cttccctccctctcttcctc 973
>gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, complete sequence Length = 190369 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 87451 cttccctccctctcttcctc 87432
>gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0001I22, complete sequence Length = 162413 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 73 ctccctctcttcctcggccgccgcctcctccc 104 ||||||||||||||| || |||||||||||| Sbjct: 148843 ctccctctcttcctccccctccgcctcctccc 148812
>ref|XM_419845.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ10342 (LOC421821), mRNA Length = 1359 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 214 cctcggccgccgcctcctcc 233
>gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, complete sequence Length = 269788 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 243642 cttccctccctctcttcctc 243623
>gb|AC134869.4| Mus musculus BAC clone RP23-137C6 from chromosome 13, complete sequence Length = 213473 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ctcggccgccgcctcctccc 104 |||||||||||||||||||| Sbjct: 109830 ctcggccgccgcctcctccc 109811
>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete sequence Length = 200350 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 25509 cttccctccctctcttcctc 25528
>gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosome 18, complete sequence Length = 186205 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 13785 cttccctccctctcttcctc 13804
>gb|AC134546.4| Mus musculus BAC clone RP24-471H17 from chromosome 18, complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 193042 cttccctccctctcttcctc 193023
>gb|AC116695.12| Mus musculus chromosome 1, clone RP24-407C10, complete sequence Length = 199978 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 114344 cttccctccctctcttcctc 114363
>ref|XM_001003125.1| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 2 (1500009C09Rik), mRNA Length = 1552 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1154 cttccctccctctcttcctc 1135
>ref|XM_001003120.1| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 1 (1500009C09Rik), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1143 cttccctccctctcttcctc 1124
>ref|XM_921067.2| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 3 (1500009C09Rik), mRNA Length = 1552 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1154 cttccctccctctcttcctc 1135
>ref|XM_921073.2| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 4 (1500009C09Rik), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1143 cttccctccctctcttcctc 1124
>ref|XM_901682.2| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 1 (1500009C09Rik), mRNA Length = 1552 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1154 cttccctccctctcttcctc 1135
>ref|XM_901684.2| PREDICTED: Mus musculus RIKEN cDNA 1500009C09 gene, transcript variant 2 (1500009C09Rik), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1143 cttccctccctctcttcctc 1124
>ref|XM_535496.2| PREDICTED: Canis familiaris a disintegrin and metalloprotease domain 10, transcript variant 1 (ADAM10), mRNA Length = 4434 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 tcttcctcggccgccgcctcctcc 103 |||||| ||||||||||||||||| Sbjct: 27 tcttccgcggccgccgcctcctcc 4
>gb|AC122243.3| Mus musculus BAC clone RP23-148C10 from chromosome 17, complete sequence Length = 204584 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 201319 cttccctccctctcttcctc 201300
>gb|AC133601.3| Mus musculus BAC clone RP24-179O1 from chromosome 18, complete sequence Length = 180978 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1205 cttccctccctctcttcctc 1186
>gb|AC122336.4| Mus musculus BAC clone RP23-351K21 from chromosome 7, complete sequence Length = 189296 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 106326 cttccctccctctcttcctc 106345
>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete sequence Length = 179952 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 65749 cttccctccctctcttcctc 65768
>gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome 19, complete sequence Length = 205768 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 88997 cttccctccctctcttcctc 88978
>gb|AC124692.3| Mus musculus BAC clone RP24-159H19 from chromosome 3, complete sequence Length = 180230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 72600 cttccctccctctcttcctc 72619
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 ttacagaaggaagtaataca 557 |||||||||||||||||||| Sbjct: 167272 ttacagaaggaagtaataca 167291
>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence Length = 234834 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 70805 cttccctccctctcttcctc 70786
>gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complete sequence Length = 212177 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 60863 cttccctccctctcttcctc 60844
>gb|AC117196.3| Mus musculus BAC clone RP23-108H19 from 8, complete sequence Length = 185947 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 164558 cttccctccctctcttcctc 164577
>gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, complete sequence Length = 177899 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 132171 cttccctccctctcttcctc 132190
>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence Length = 213683 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 106171 cttccctccctctcttcctc 106190
>gb|AC025260.29| Homo sapiens 12 BAC RP11-356O22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164872 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gcttccctccctctcttcct 86 |||||||||||||||||||| Sbjct: 37364 gcttccctccctctcttcct 37345
>gb|AC102339.16| Mus musculus chromosome 18, clone RP24-573J7, complete sequence Length = 170154 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 9086 cttccctccctctcttcctc 9105
>gb|AC115737.9| Mus musculus chromosome 3, clone RP23-473G18, complete sequence Length = 179034 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 67856 cttccctccctctcttcctc 67875
>gb|AC102934.11| Mus musculus chromosome 3, clone RP24-209C11, complete sequence Length = 172970 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 55667 cttccctccctctcttcctc 55686
>gb|AC158905.4| Mus musculus chromosome 19, clone RP23-237A13, complete sequence Length = 171018 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 128699 cttccctccctctcttcctc 128718
>emb|AL390239.16| Human DNA sequence from clone RP11-58J3 on chromosome 9 Contains part of the PCA3 gene for prostate cancer antigen 3 (DD3), a novel gene (LOC158471) and a CpG island, complete sequence Length = 129109 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 81411 cttccctccctctcttcctc 81392
>emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on chromosome 13 Contains part of a novel gene (including KIAA0865), possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and a novel gene, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ctataggaaaaacatggaaa 448 |||||||||||||||||||| Sbjct: 143574 ctataggaaaaacatggaaa 143555
>emb|AL137027.17| Human DNA sequence from clone RP5-1125N11 on chromosome 1p34.2-35.3 Contains the 5' end of the gene for Lysosomal-associated multispanning membrane protein-5 (LAPTM5), a novel gene and the 5' end of a novel gene, complete sequence Length = 101143 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 58918 cttccctccctctcttcctc 58899
>emb|AL136100.12| Human DNA sequence from clone RP11-534P19 on chromosome 6 Contains a pseudogene similar to zinc finger proteins, complete sequence Length = 172212 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 78775 cttccctccctctcttcctc 78756
>emb|AL118522.32|HSDJ781B1 Human DNA sequence from clone RP4-781B1 on chromosome 20 Contains the 5' end of a novel gene, the KCNK15 gene for potassium channel subfamily K member 15, a novel gene, the RIMS4 gene for regulating synaptic membrane exocytosis 4 and three CpG islands, complete sequence Length = 107109 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 93387 cttccctccctctcttcctc 93406
>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13 Contains the C20orf96 gene, the C20orf99 gene, a novel gene, the SOX12 gene for SRY (sex-determining region Y)-box 12, the C20orf98 gene for chromosome 20 open reading frame 98 (similar to mouse VMP, FLJ23329), the C20orf97 gene for a novel kinase domain-containing protein similar to phosphoprotein C8FW and rat NIPK, the gene for a novel defensin protein (DEFB32, UNQ827, KFLL827) and five CpG islands, complete sequence Length = 153170 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 64828 cttccctccctctcttcctc 64847
>gb|AC157581.2| Mus musculus chromosome 18, clone RP24-249P15, complete sequence Length = 176836 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 141716 cttccctccctctcttcctc 141697
>gb|AC105586.5| Rattus norvegicus 3 BAC CH230-239D4 (Children's Hospital Oakland Research Institute) complete sequence Length = 235468 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ttccctccctctcttcctcg 88 |||||||||||||||||||| Sbjct: 99598 ttccctccctctcttcctcg 99617
>gb|AC123540.3| Oryctolagus cuniculus clone LB1-151A4, complete sequence Length = 187337 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgttctaacagaactcaaga 376 |||||||||||||||||||| Sbjct: 85783 tgttctaacagaactcaaga 85802
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gcaagcggcggatgagcgcg 180 |||||||||||||||||||| Sbjct: 2268946 gcaagcggcggatgagcgcg 2268965
>gb|AC121159.2| Homo sapiens BAC clone RP11-728C16 from 4, complete sequence Length = 16532 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 15624 cttccctccctctcttcctc 15643
>gb|AC104325.28| Mus musculus strain C57BL/6J clone rp23-204m3 map 15, complete sequence Length = 224086 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 109271 cttccctccctctcttcctc 109252
>emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3 Length = 250050 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 tatattctataaaccaaaaa 526 |||||||||||||||||||| Sbjct: 49929 tatattctataaaccaaaaa 49910
>emb|AL607007.3|OSJN00118 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018J12, complete sequence Length = 120004 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctcccctctccccacagcg 216 |||||||||||||||||||| Sbjct: 94823 tctcccctctccccacagcg 94842
>gb|AC116158.5| Homo sapiens chromosome , clone RP11-102L12, complete sequence Length = 159236 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 122096 cttccctccctctcttcctc 122115
>gb|AC108910.18| Mus musculus chromosome 18, clone RP24-550O15, complete sequence Length = 206978 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 176204 cttccctccctctcttcctc 176223
>gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, complete sequence Length = 207258 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 122857 cttccctccctctcttcctc 122876
>gb|AF351806.1|F351799S08 Mus musculus Abcg8 gene, partial sequence Length = 626 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 150 cttccctccctctcttcctc 169
>gb|AC160129.2| Mus musculus BAC clone RP23-253N17 from chromosome 9, complete sequence Length = 205094 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 67461 cttccctccctctcttcctc 67442
>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence Length = 214250 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1131 cttccctccctctcttcctc 1150
>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence Length = 155839 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 92632 cttccctccctctcttcctc 92651
>gb|AC027287.21| Homo sapiens 12 BAC RP11-616L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202703 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 atatgagacattctataggaaaaa 440 |||||||||||||| ||||||||| Sbjct: 141148 atatgagacattctttaggaaaaa 141125
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 1967130 cctcggccgccgcctcctcc 1967111
>gb|AC091020.10| Homo sapiens chromosome 18, clone RP11-701C7, complete sequence Length = 184164 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 76327 cttccctccctctcttcctc 76308
>gb|AC011804.6| Homo sapiens chromosome 18, clone RP11-71F23, complete sequence Length = 205174 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 110308 cttccctccctctcttcctc 110289
>ref|XM_945390.1| PREDICTED: Homo sapiens hypothetical protein LOC652289 (LOC652289), mRNA Length = 636 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 tccagcagctcgcctcctccctgc 132 ||||||| |||||||||||||||| Sbjct: 314 tccagcacctcgcctcctccctgc 337
>ref|XM_934371.1| PREDICTED: Homo sapiens hypothetical protein LOC647104 (LOC647104), mRNA Length = 636 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 tccagcagctcgcctcctccctgc 132 ||||||| |||||||||||||||| Sbjct: 314 tccagcacctcgcctcctccctgc 337
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 ctcttcctcggccgccgcct 98 |||||||||||||||||||| Sbjct: 1392908 ctcttcctcggccgccgcct 1392889
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 tgttctaacagaactcaaga 376 |||||||||||||||||||| Sbjct: 1328759 tgttctaacagaactcaaga 1328778
>gb|AC152401.6| Mus musculus chromosome 3, clone RP23-287A2, complete sequence Length = 217151 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 40150 cttccctccctctcttcctc 40131
>emb|BX664627.16| Zebrafish DNA sequence from clone DKEYP-55D11 in linkage group 6, complete sequence Length = 206408 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 agcccaggttctcccctctc 207 |||||||||||||||||||| Sbjct: 24740 agcccaggttctcccctctc 24759
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 841186 cctcggccgccgcctcctcc 841205
>gb|AC131664.3| Mus musculus BAC clone RP23-274J16 from chromosome 5, complete sequence Length = 189996 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 48599 cttccctccctctcttcctc 48580
>emb|CR387510.1| Gallus gallus finished cDNA, clone ChEST950a3 Length = 994 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 164 cctcggccgccgcctcctcc 183
>gb|BC023061.1| Mus musculus RIKEN cDNA 1500009C09 gene, mRNA (cDNA clone IMAGE:5358202), partial cds Length = 1462 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1046 cttccctccctctcttcctc 1027
>dbj|AK005178.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500009C09 product:hypothetical protein, full insert sequence Length = 1446 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1056 cttccctccctctcttcctc 1037
>dbj|AK042407.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630089J12 product:unclassifiable, full insert sequence Length = 1621 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 ttacagaaggaagtaataca 557 |||||||||||||||||||| Sbjct: 696 ttacagaaggaagtaataca 677
>emb|BX934526.2| Gallus gallus finished cDNA, clone ChEST607j7 Length = 1015 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 191 cctcggccgccgcctcctcc 210
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctcccctctccccacagcg 216 |||||||||||||||||||| Sbjct: 10114339 tctcccctctccccacagcg 10114358
>gb|AF284062.1|AF284062 Penicillium marneffei homeodomain transcription factor StlA (stlA) gene, complete cds; and unknown gene Length = 5857 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 1298 cttccctccctctcttcctc 1317
>gb|AC009501.4| Homo sapiens BAC clone RP11-511I11 from 2, complete sequence Length = 157173 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 tccagcagctcgcctcctccctgc 132 ||||||| |||||||||||||||| Sbjct: 46793 tccagcacctcgcctcctccctgc 46816
>gb|AC105399.3| Homo sapiens BAC clone RP11-715P7 from 2, complete sequence Length = 172435 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 135038 cttccctccctctcttcctc 135019
>gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156886 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gcttccctccctctcttcct 86 |||||||||||||||||||| Sbjct: 116181 gcttccctccctctcttcct 116162
>gb|AC078994.3|AC078994 Homo sapiens chromosome 2 clone RP11-16B4 containing NRXN1 gene, partial cds, complete sequence Length = 179616 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 2441 cttccctccctctcttcctc 2422
>gb|AC084375.11| Homo sapiens 12 BAC RP11-664D1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 96775 cttccctccctctcttcctc 96756
>gb|AC013469.8| Homo sapiens BAC clone RP11-463B12 from 2, complete sequence Length = 171419 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ggcttccctccctctcttcc 85 |||||||||||||||||||| Sbjct: 3704 ggcttccctccctctcttcc 3723
>gb|AC069550.4|AC069550 Sequence of chromosome 2 clone RP11-471B2 containing Homo sapiens NRXNI gene, partial cds, complete sequence Length = 166054 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 165185 cttccctccctctcttcctc 165166
>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202478 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 10394 cttccctccctctcttcctc 10413
>gb|AC102797.5| Homo sapiens chromosome 18, clone RP11-157P23, complete sequence Length = 179632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 2643 cttccctccctctcttcctc 2662
>ref|XM_215963.3| PREDICTED: Rattus norvegicus laminin, alpha 5 (Lama5), mRNA Length = 11318 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 acgcagcggccgccgatgct 41 |||||||||||||||||||| Sbjct: 973 acgcagcggccgccgatgct 954
>gb|AC012599.9| Homo sapiens 12 PAC RP5-1185J21 (Roswell Park Cancer INstitute Human PAC Library) complete sequence Length = 98027 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 69051 cttccctccctctcttcctc 69032
>gb|AY062256.2| Homo sapiens otospiralin gene, complete cds Length = 1630 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ggcttccctccctctcttcc 85 |||||||||||||||||||| Sbjct: 1084 ggcttccctccctctcttcc 1103
>gb|AC153505.6| Mus musculus 10 BAC RP23-336I13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190636 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 aatgctgacctcatgtgcatacag 405 ||||| |||||||||||||||||| Sbjct: 155022 aatgcagacctcatgtgcatacag 155045
>ref|XM_309655.2| Anopheles gambiae str. PEST ENSANGP00000019714 (ENSANGG00000017225), partial mRNA Length = 3480 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 13 cttccctccctctcttcctc 32
>gb|AC154752.2| Mus musculus BAC clone RP24-402K18 from 16, complete sequence Length = 174112 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 3761 cttccctccctctcttcctc 3742
>dbj|AK071042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080C02, full insert sequence Length = 1626 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tctcccctctccccacagcg 216 |||||||||||||||||||| Sbjct: 105 tctcccctctccccacagcg 124
>ref|NM_210322.1| Eremothecium gossypii AER108Cp (AER108C), mRNA Length = 801 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcggccgccgcctcctcc 103 |||||||||||||||||||| Sbjct: 394 cctcggccgccgcctcctcc 375
>gb|AC154386.2| Mus musculus BAC clone RP23-27A13 from 13, complete sequence Length = 170110 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 15466 cttccctccctctcttcctc 15485
>gb|AC153792.4| Mus musculus BAC clone RP23-435D23 from 7, complete sequence Length = 224041 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 180873 cttccctccctctcttcctc 180892
>gb|AC099636.8| Mus musculus chromosome 19, clone RP24-149H13, complete sequence Length = 141121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 115741 cttccctccctctcttcctc 115722
>gb|AC121544.9| Mus musculus chromosome 3, clone RP24-483I22, complete sequence Length = 134800 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 86666 cttccctccctctcttcctc 86647
>gb|AF109465.1|AF109465 Feline calicivirus strain F65 complete genome Length = 7681 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ccctaaatccagcagctcgc 121 |||||||||||||||||||| Sbjct: 7548 ccctaaatccagcagctcgc 7529
>dbj|AP002768.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-673F18, complete sequence Length = 186084 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 98074 cttccctccctctcttcctc 98093
>gb|AC105358.7| Mus musculus chromosome 15, clone RP24-291F2, complete sequence Length = 179508 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 19305 cttccctccctctcttcctc 19324
>dbj|AP002800.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832A4, complete sequence Length = 215441 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 38028 cttccctccctctcttcctc 38009
>emb|AL954176.9| Zebrafish DNA sequence from clone CH211-222J14, complete sequence Length = 185925 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 agcccaggttctcccctctc 207 |||||||||||||||||||| Sbjct: 149022 agcccaggttctcccctctc 149003
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 73 ctccctctcttcctcggccgccgcctcctccc 104 ||||||||||||||| || |||||||||||| Sbjct: 18313586 ctccctctcttcctccccctccgcctcctccc 18313555
>gb|AC124428.4| Mus musculus BAC clone RP24-239M23 from 5, complete sequence Length = 167334 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 58324 cttccctccctctcttcctc 58343
>gb|AC151409.2| Mus musculus BAC clone RP24-541K8 from 18, complete sequence Length = 179265 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 72618 cttccctccctctcttcctc 72599
>gb|AC165360.3| Mus musculus BAC clone RP23-110L20 from chromosome 17, complete sequence Length = 217732 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 116953 cttccctccctctcttcctc 116972
>gb|AC149593.5| Mus musculus BAC clone RP23-34O23 from 7, complete sequence Length = 231000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 36497 cttccctccctctcttcctc 36516
>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete sequence Length = 176581 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 97838 cttccctccctctcttcctc 97819
>emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chromosome 13, complete sequence Length = 182622 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 170506 cttccctccctctcttcctc 170525
>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence Length = 198860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 117910 cttccctccctctcttcctc 117929
>gb|AC163341.5| Mus musculus BAC clone RP24-138G13 from chromosome 6, complete sequence Length = 179417 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 86226 cttccctccctctcttcctc 86245
>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete sequence Length = 191638 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 28799 cttccctccctctcttcctc 28780
>emb|AL645543.13| Mouse DNA sequence from clone RP23-204P15 on chromosome X, complete sequence Length = 188023 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 cttccctccctctcttcctc 87 |||||||||||||||||||| Sbjct: 129818 cttccctccctctcttcctc 129799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,953,127 Number of Sequences: 3902068 Number of extensions: 5953127 Number of successful extensions: 164949 Number of sequences better than 10.0: 169 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 163978 Number of HSP's gapped (non-prelim): 971 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
