ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF123608.1|AF123608 Triticum aestivum clone CYP73-TA cytochro... 68 3e-09
2gb|AY034143.1| Sorghum bicolor cinnamic acid 4-hydroxylase (C4H)... 44 0.046
3ref|XM_878506.1| PREDICTED: Bos taurus similar to Y55F3AM.9, tra... 42 0.18
4ref|XM_582056.2| PREDICTED: Bos taurus similar to Y55F3AM.9, tra... 42 0.18
5ref|XM_866425.1| PREDICTED: Bos taurus similar to Y55F3AM.9, tra... 42 0.18
6ref|XM_878405.1| PREDICTED: Bos taurus similar to Y55F3AM.9, tra... 42 0.18
7gb|BC105561.1| Bos taurus similar to Y55F3AM.9, transcript varia... 42 0.18
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 0.72
9gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 40 0.72
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.72
11dbj|AK109731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.72
12gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 0.72
13gb|AC162887.5| Mus musculus chromosome 19, clone RP23-414O6, com... 38 2.9
14ref|XM_851529.1| PREDICTED: Canis familiaris similar to chromoso... 38 2.9
15ref|XM_851488.1| PREDICTED: Canis familiaris similar to chromoso... 38 2.9
16ref|XM_540474.2| PREDICTED: Canis familiaris similar to chromoso... 38 2.9
17gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206... 38 2.9
18gb|L07634.1|PHVC4HYDRO Vigna radiata var. radiata cinnamate 4-hy... 38 2.9
19gb|AY104175.1| Zea mays PCO098406 mRNA sequence 38 2.9

>gb|AF123608.1|AF123608 Triticum aestivum clone CYP73-TA cytochrome P450 mRNA, complete
          cds
          Length = 1506

 Score = 67.9 bits (34), Expect = 3e-09
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 31 atggacgtcctcctcctggagaaagccctgctgggcctcttc 72
          ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1  atggacgtcctcctcctggagaaggccctcctgggcctcttc 42



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>gb|AY034143.1| Sorghum bicolor cinnamic acid 4-hydroxylase (C4H) mRNA, complete
           cds
          Length = 1762

 Score = 44.1 bits (22), Expect = 0.046
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 43  ctcctggagaaagccctgctgggcct 68
           ||||||||||| ||||||||||||||
Sbjct: 79  ctcctggagaaggccctgctgggcct 104



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>ref|XM_878506.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 4
           (LOC505719), mRNA
          Length = 1397

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ctcctcctggagaaagccctg 60
           |||||||||||||||||||||
Sbjct: 560 ctcctcctggagaaagccctg 540



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>ref|XM_582056.2| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 1
            (LOC505719), mRNA
          Length = 2673

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ctcctcctggagaaagccctg 60
            |||||||||||||||||||||
Sbjct: 1836 ctcctcctggagaaagccctg 1816



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>ref|XM_866425.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 2
            (LOC505719), mRNA
          Length = 2770

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ctcctcctggagaaagccctg 60
            |||||||||||||||||||||
Sbjct: 1933 ctcctcctggagaaagccctg 1913



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>ref|XM_878405.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 3
           (LOC505719), mRNA
          Length = 1753

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ctcctcctggagaaagccctg 60
           |||||||||||||||||||||
Sbjct: 916 ctcctcctggagaaagccctg 896



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>gb|BC105561.1| Bos taurus similar to Y55F3AM.9, transcript variant 1, mRNA (cDNA
            clone MGC:128936 IMAGE:8120515), complete cds
          Length = 2455

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ctcctcctggagaaagccctg 60
            |||||||||||||||||||||
Sbjct: 1476 ctcctcctggagaaagccctg 1456



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       gacgtcctcctcctggagaa 53
                ||||||||||||||||||||
Sbjct: 11055685 gacgtcctcctcctggagaa 11055666



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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    gacgtcctcctcctggagaa 53
             ||||||||||||||||||||
Sbjct: 77437 gacgtcctcctcctggagaa 77456



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       gacgtcctcctcctggagaa 53
                ||||||||||||||||||||
Sbjct: 11052448 gacgtcctcctcctggagaa 11052429



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>dbj|AK109731.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C01, full
           insert sequence
          Length = 1516

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  gacgtcctcctcctggagaa 53
           ||||||||||||||||||||
Sbjct: 626 gacgtcctcctcctggagaa 645



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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 40.1 bits (20), Expect = 0.72
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gacgtcctcctcctggagaa 53
             ||||||||||||||||||||
Sbjct: 99170 gacgtcctcctcctggagaa 99151



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>gb|AC162887.5| Mus musculus chromosome 19, clone RP23-414O6, complete sequence
          Length = 190704

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    agaaagccctgctgggcct 68
             |||||||||||||||||||
Sbjct: 35178 agaaagccctgctgggcct 35160



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>ref|XM_851529.1| PREDICTED: Canis familiaris similar to chromosome 17 open reading
           frame 27, transcript variant 4 (LOC483355), mRNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 45  cctggagaaagccctgctg 63
           |||||||||||||||||||
Sbjct: 116 cctggagaaagccctgctg 134



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>ref|XM_851488.1| PREDICTED: Canis familiaris similar to chromosome 17 open reading
          frame 27, transcript variant 3 (LOC483355), mRNA
          Length = 1397

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 45 cctggagaaagccctgctg 63
          |||||||||||||||||||
Sbjct: 58 cctggagaaagccctgctg 76



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>ref|XM_540474.2| PREDICTED: Canis familiaris similar to chromosome 17 open reading
            frame 27, transcript variant 1 (LOC483355), mRNA
          Length = 10707

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 45   cctggagaaagccctgctg 63
            |||||||||||||||||||
Sbjct: 8629 cctggagaaagccctgctg 8647



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>gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206M19, complete sequence
          Length = 198338

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    agaaagccctgctgggcct 68
             |||||||||||||||||||
Sbjct: 37408 agaaagccctgctgggcct 37426



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>gb|L07634.1|PHVC4HYDRO Vigna radiata var. radiata cinnamate 4-hydroxylase mRNA, complete
          cds
          Length = 1766

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                             
Query: 38 tcctcctcctggagaaagccctgctgggcctcttc 72
          ||||||||||||||||  |||| || |||||||||
Sbjct: 33 tcctcctcctggagaagaccctcctcggcctcttc 67



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>gb|AY104175.1| Zea mays PCO098406 mRNA sequence
          Length = 1755

 Score = 38.2 bits (19), Expect = 2.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 42  cctcctggagaaagccctgctgggcct 68
           |||||| ||||| ||||||||||||||
Sbjct: 74  cctcctagagaaggccctgctgggcct 100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 591,662
Number of Sequences: 3902068
Number of extensions: 591662
Number of successful extensions: 40256
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40215
Number of HSP's gapped (non-prelim): 41
length of query: 72
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 51
effective length of database: 17,151,101,840
effective search space: 874706193840
effective search space used: 874706193840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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