Clone Name | bart10f07 |
---|---|
Clone Library Name | barley_pub |
>gb|AF123608.1|AF123608 Triticum aestivum clone CYP73-TA cytochrome P450 mRNA, complete cds Length = 1506 Score = 67.9 bits (34), Expect = 3e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 31 atggacgtcctcctcctggagaaagccctgctgggcctcttc 72 ||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 1 atggacgtcctcctcctggagaaggccctcctgggcctcttc 42
>gb|AY034143.1| Sorghum bicolor cinnamic acid 4-hydroxylase (C4H) mRNA, complete cds Length = 1762 Score = 44.1 bits (22), Expect = 0.046 Identities = 25/26 (96%) Strand = Plus / Plus Query: 43 ctcctggagaaagccctgctgggcct 68 ||||||||||| |||||||||||||| Sbjct: 79 ctcctggagaaggccctgctgggcct 104
>ref|XM_878506.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 4 (LOC505719), mRNA Length = 1397 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctcctcctggagaaagccctg 60 ||||||||||||||||||||| Sbjct: 560 ctcctcctggagaaagccctg 540
>ref|XM_582056.2| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 1 (LOC505719), mRNA Length = 2673 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctcctcctggagaaagccctg 60 ||||||||||||||||||||| Sbjct: 1836 ctcctcctggagaaagccctg 1816
>ref|XM_866425.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 2 (LOC505719), mRNA Length = 2770 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctcctcctggagaaagccctg 60 ||||||||||||||||||||| Sbjct: 1933 ctcctcctggagaaagccctg 1913
>ref|XM_878405.1| PREDICTED: Bos taurus similar to Y55F3AM.9, transcript variant 3 (LOC505719), mRNA Length = 1753 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctcctcctggagaaagccctg 60 ||||||||||||||||||||| Sbjct: 916 ctcctcctggagaaagccctg 896
>gb|BC105561.1| Bos taurus similar to Y55F3AM.9, transcript variant 1, mRNA (cDNA clone MGC:128936 IMAGE:8120515), complete cds Length = 2455 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctcctcctggagaaagccctg 60 ||||||||||||||||||||| Sbjct: 1476 ctcctcctggagaaagccctg 1456
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gacgtcctcctcctggagaa 53 |||||||||||||||||||| Sbjct: 11055685 gacgtcctcctcctggagaa 11055666
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 gacgtcctcctcctggagaa 53 |||||||||||||||||||| Sbjct: 77437 gacgtcctcctcctggagaa 77456
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gacgtcctcctcctggagaa 53 |||||||||||||||||||| Sbjct: 11052448 gacgtcctcctcctggagaa 11052429
>dbj|AK109731.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C01, full insert sequence Length = 1516 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 gacgtcctcctcctggagaa 53 |||||||||||||||||||| Sbjct: 626 gacgtcctcctcctggagaa 645
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 40.1 bits (20), Expect = 0.72 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gacgtcctcctcctggagaa 53 |||||||||||||||||||| Sbjct: 99170 gacgtcctcctcctggagaa 99151
>gb|AC162887.5| Mus musculus chromosome 19, clone RP23-414O6, complete sequence Length = 190704 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 agaaagccctgctgggcct 68 ||||||||||||||||||| Sbjct: 35178 agaaagccctgctgggcct 35160
>ref|XM_851529.1| PREDICTED: Canis familiaris similar to chromosome 17 open reading frame 27, transcript variant 4 (LOC483355), mRNA Length = 1455 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctggagaaagccctgctg 63 ||||||||||||||||||| Sbjct: 116 cctggagaaagccctgctg 134
>ref|XM_851488.1| PREDICTED: Canis familiaris similar to chromosome 17 open reading frame 27, transcript variant 3 (LOC483355), mRNA Length = 1397 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctggagaaagccctgctg 63 ||||||||||||||||||| Sbjct: 58 cctggagaaagccctgctg 76
>ref|XM_540474.2| PREDICTED: Canis familiaris similar to chromosome 17 open reading frame 27, transcript variant 1 (LOC483355), mRNA Length = 10707 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctggagaaagccctgctg 63 ||||||||||||||||||| Sbjct: 8629 cctggagaaagccctgctg 8647
>gb|AC087098.8| Genomic sequence for Mus musculus, clone RP23-206M19, complete sequence Length = 198338 Score = 38.2 bits (19), Expect = 2.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 agaaagccctgctgggcct 68 ||||||||||||||||||| Sbjct: 37408 agaaagccctgctgggcct 37426
>gb|L07634.1|PHVC4HYDRO Vigna radiata var. radiata cinnamate 4-hydroxylase mRNA, complete cds Length = 1766 Score = 38.2 bits (19), Expect = 2.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 38 tcctcctcctggagaaagccctgctgggcctcttc 72 |||||||||||||||| |||| || ||||||||| Sbjct: 33 tcctcctcctggagaagaccctcctcggcctcttc 67
>gb|AY104175.1| Zea mays PCO098406 mRNA sequence Length = 1755 Score = 38.2 bits (19), Expect = 2.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 42 cctcctggagaaagccctgctgggcct 68 |||||| ||||| |||||||||||||| Sbjct: 74 cctcctagagaaggccctgctgggcct 100 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 591,662 Number of Sequences: 3902068 Number of extensions: 591662 Number of successful extensions: 40256 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40215 Number of HSP's gapped (non-prelim): 41 length of query: 72 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 51 effective length of database: 17,151,101,840 effective search space: 874706193840 effective search space used: 874706193840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)