Clone Name | bart10f04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY667409.1| Triticum aestivum TOM7-like protein mRNA, complete cds Length = 249 Score = 87.7 bits (44), Expect = 7e-15 Identities = 47/48 (97%) Strand = Plus / Plus Query: 1 ggagacgagcccaaacctagcttgctccagcttctgtctcccgtctga 48 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 202 ggagacgagcccaaacctagcttgctccagcttctgtcccccgtctga 249
>gb|AC175494.3| Mus musculus BAC clone RP24-75G20 from chromosome y, complete sequence Length = 229858 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 aagttttttatgtttgttggatctt 124 ||||||| ||||||||||||||||| Sbjct: 10254 aagttttctatgtttgttggatctt 10278
>gb|AC129595.3| Mus musculus BAC clone RP23-257H19 from chromosome 7, complete sequence Length = 214318 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 aagttttttatgtttgttggatctt 124 ||||||||||| ||||||||||||| Sbjct: 70832 aagttttttatctttgttggatctt 70808
>gb|AC159639.2| Mus musculus BAC clone RP24-79M15 from chromosome 12, complete sequence Length = 220032 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 aagttttttatgtttgttggatctt 124 ||||||| ||||||||||||||||| Sbjct: 355 aagttttctatgtttgttggatctt 331
>gb|AC155245.3| Mus musculus BAC clone RP24-314P16 from chromosome 12, complete sequence Length = 169249 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 aagttttttatgtttgttggatctt 124 ||||||| ||||||||||||||||| Sbjct: 5397 aagttttctatgtttgttggatctt 5421
>gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, complete sequence Length = 194728 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 aagttttttatgtttgttggatctt 124 ||||||||||| ||||||||||||| Sbjct: 151309 aagttttttatctttgttggatctt 151333
>emb|BX510358.4| Mouse DNA sequence from clone RP23-78G10 on chromosome X, complete sequence Length = 60208 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 aagttttttatgtttgttggatctt 124 ||||||||||| ||||||||||||| Sbjct: 58548 aagttttttatatttgttggatctt 58572
>emb|AL671915.8| Mouse DNA sequence from clone RP23-182N4 on chromosome X, complete sequence Length = 171014 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 aagttttttatgtttgttggatctt 124 ||||||||||| ||||||||||||| Sbjct: 340 aagttttttatatttgttggatctt 364
>gb|BC056709.1| Danio rerio heat shock cognate 70-kd protein, mRNA (cDNA clone MGC:65778 IMAGE:6789418), complete cds Length = 2375 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttttatgtttgttggatctt 124 |||||||||||||||||||| Sbjct: 107 ttttatgtttgttggatctt 88
>emb|AL021497.1|CEY51A2D Caenorhabditis elegans YAC Y51A2D, complete sequence Length = 139259 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctccagcttctgtctcccgt 44 |||||||||||||||||||| Sbjct: 107874 ctccagcttctgtctcccgt 107893
>emb|AL133472.12| Human DNA sequence from clone RP1-177C7 on chromosome 6 Contains the 5' end of the gene for a novel protein (FLJ30976) and the 5' end of the KIAA0274 gene (similar to the novel protein CG17840). Contains a CpG island, complete sequence Length = 87434 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 taaagttttttatgtttgtt 117 |||||||||||||||||||| Sbjct: 30985 taaagttttttatgtttgtt 30966
>emb|Z46727.1|SC9395 S.cerevisiae chromosome IV cosmid 9395 Length = 39334 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tttagtaactaaagtttttt 108 |||||||||||||||||||| Sbjct: 20513 tttagtaactaaagtttttt 20532
>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete sequence Length = 192470 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gctccagcttctgtctcccg 43 |||||||||||||||||||| Sbjct: 7368 gctccagcttctgtctcccg 7387
>gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, complete sequence Length = 147607 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 taactaaagttttttatgtttgtt 117 ||||||||||||||| |||||||| Sbjct: 129116 taactaaagttttttttgtttgtt 129093
>emb|BX511232.6| Zebrafish DNA sequence from clone CH211-11K18 in linkage group 3, complete sequence Length = 171843 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ttttatgtttgttggatctt 124 |||||||||||||||||||| Sbjct: 4172 ttttatgtttgttggatctt 4153
>emb|Y14279.1|SCSCC2 Saccharomyces cerevisiae scc2 gene Length = 10092 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tttagtaactaaagtttttt 108 |||||||||||||||||||| Sbjct: 3214 tttagtaactaaagtttttt 3233
>emb|AL845308.11| Mouse DNA sequence from clone RP23-31I2 on chromosome 2, complete sequence Length = 209309 Score = 40.1 bits (20), Expect = 1.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 ctaaagttttttatgtttgttggatctt 124 |||||||| ||||| ||||||||||||| Sbjct: 50587 ctaaagttctttatctttgttggatctt 50614
>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete sequence Length = 206286 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gctccagcttctgtctcccg 43 |||||||||||||||||||| Sbjct: 60495 gctccagcttctgtctcccg 60476
>gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, complete sequence Length = 190149 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 143416 taactaaagttgtttatgtttgt 143394
>gb|AC005682.2| Homo sapiens BAC clone RP11-84K19 from 7, complete sequence Length = 162139 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 22743 taactaaagttgtttatgtttgt 22765
>gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, complete sequence Length = 211780 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 96650 taactaaagttgtttatgtttgt 96672
>ref|XM_540012.2| PREDICTED: Canis familiaris similar to N-acylsphingosine amidohydrolase (acid ceramidase) 1 preproprotein isoform a (LOC482897), mRNA Length = 2158 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 87 cttttagtaactaaagtttttta 109 |||||||||||| |||||||||| Sbjct: 1990 cttttagtaacttaagtttttta 1968
>emb|BX950868.13| Zebrafish DNA sequence from clone DKEY-54I3 in linkage group 5, complete sequence Length = 204339 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 92 agtaactaaagttttttatgttt 114 |||| |||||||||||||||||| Sbjct: 159413 agtatctaaagttttttatgttt 159391
>gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosome 15, complete sequence Length = 162455 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 ctccagcttctgtctcccg 43 ||||||||||||||||||| Sbjct: 112017 ctccagcttctgtctcccg 111999
>emb|AL592285.7| Human DNA sequence from clone RP11-153I22 on chromosome 1 Contains part of the PDE4B gene for phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila), complete sequence Length = 152113 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ttttagtaactaaagtttt 106 ||||||||||||||||||| Sbjct: 67498 ttttagtaactaaagtttt 67516
>emb|AL390205.17| Human DNA sequence from clone RP11-15H7 on chromosome 6 Contains an ATP synthase H+ transporting mitochondrial F0 complex subunit b variant 1 (ATP5F1) pseudogene and a thyroid hormone receptor interactor 4 (TRIP4) pseudogene, complete sequence Length = 155680 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 gttttttatgtttgttgga 120 ||||||||||||||||||| Sbjct: 97069 gttttttatgtttgttgga 97087
>emb|CR858416.1| Pongo pygmaeus mRNA; cDNA DKFZp468N1212 (from clone DKFZp468N1212) Length = 3143 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 3086 taactaaagttgtttatgtttgt 3108
>dbj|AK054887.1| Homo sapiens cDNA FLJ30325 fis, clone BRACE2007153 Length = 1745 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 1640 taactaaagttgtttatgtttgt 1662
>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence Length = 139267 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 agcttctgtctcccgtctg 47 ||||||||||||||||||| Sbjct: 9379 agcttctgtctcccgtctg 9361
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 6.2 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 13 aaacctagcttgctccagcttctgtct 39 ||||||||||| ||||||||||||||| Sbjct: 13731359 aaacctagctt-ctccagcttctgtct 13731334
>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 177800 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 aaagttttttatgtttgtt 117 ||||||||||||||||||| Sbjct: 24948 aaagttttttatgtttgtt 24966
>ref|NM_032581.2| Homo sapiens down-regulated by Ctnnb1, a (DRCTNNB1A), mRNA Length = 3768 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 2835 taactaaagttgtttatgtttgt 2857
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 38.2 bits (19), Expect = 6.2 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 13 aaacctagcttgctccagcttctgtct 39 ||||||||||| ||||||||||||||| Sbjct: 129473 aaacctagctt-ctccagcttctgtct 129448
>emb|BX640757.1|HSM806836 Homo sapiens mRNA; cDNA DKFZp686H0325 (from clone DKFZp686H0325) Length = 6467 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 3155 taactaaagttgtttatgtttgt 3177
>gb|AC002071.1|AC002071 Human PAC clone RP1-2C6 from Xq23, complete sequence Length = 63726 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 agttttttatgtttgttgg 119 ||||||||||||||||||| Sbjct: 43650 agttttttatgtttgttgg 43632
>gb|BC018710.1| Homo sapiens down-regulated by Ctnnb1, a, mRNA (cDNA clone MGC:31772 IMAGE:4649785), complete cds Length = 3768 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 2835 taactaaagttgtttatgtttgt 2857
>gb|AC153591.4| Mus musculus 6 BAC RP23-301O22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211061 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 aaagttttttatgtttgtt 117 ||||||||||||||||||| Sbjct: 167483 aaagttttttatgtttgtt 167501
>gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome Length = 996422 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 actaaagttttttatgtttgttg 118 ||||||||||||||| ||||||| Sbjct: 928769 actaaagttttttatatttgttg 928747
>emb|AL450226.1|HSBC17A99 Homo sapiens chromosome 17 sequence from PAC RP5-1037N22 map 17q13.3 region D17S695-D17S654, complete sequence Length = 123454 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 agcttctgtctcccgtctg 47 ||||||||||||||||||| Sbjct: 2949 agcttctgtctcccgtctg 2967
>gb|AC140393.3| Mus musculus BAC clone RP24-179D17 from 14, complete sequence Length = 184279 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 gtaactaaagttttttatgtttg 115 ||||||||||||||| ||||||| Sbjct: 102085 gtaactaaagtttttaatgtttg 102107
>emb|AL833296.1|HSM804609 Homo sapiens mRNA; cDNA DKFZp451I149 (from clone DKFZp451I149) Length = 6325 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 taactaaagttttttatgtttgt 116 ||||||||||| ||||||||||| Sbjct: 3021 taactaaagttgtttatgtttgt 3043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,363,874 Number of Sequences: 3902068 Number of extensions: 1363874 Number of successful extensions: 124417 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 124308 Number of HSP's gapped (non-prelim): 111 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)