ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10e10 |
|---|---|
| Clone Library Name | barley_pub |
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 117 bits (294), Expect = 2e-26 Identities = 65/141 (46%), Positives = 86/141 (60%), Gaps = 8/141 (5%) Frame = +1 Query: 151 ERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG----RFHG 318 E+ RL+ L F +YA A+D SGPL+PGV++VE AV+ V G ++H Sbjct: 18 EKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHD 77 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASEARRSGV-- 492 VP +VL ++D+KVD +V EL+R +PP VK SAQA A P +AR +ASE RR+GV Sbjct: 78 VPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVE 137 Query: 493 --KGAAKDVYGMVEPVAKDLY 549 G AK VY EP AK+LY Sbjct: 138 TASGMAKSVYSKYEPAAKELY 158
>SRP_VITRI (Q9SW70) Stress-related protein| Length = 248 Score = 108 bits (271), Expect = 8e-24 Identities = 61/140 (43%), Positives = 79/140 (56%), Gaps = 8/140 (5%) Frame = +1 Query: 151 ERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG----RFHG 318 E RL+ L F LY A+++SGPL+PGV VE V+ V G +F+ Sbjct: 16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYD 75 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASEARRSGV-- 492 VPF++L FVDRKV+ ++ EL RH+P VK AS QA PELA +ASE +R GV Sbjct: 76 VPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVD 135 Query: 493 --KGAAKDVYGMVEPVAKDL 546 K K+VY EP AK+L Sbjct: 136 TAKNITKNVYSKCEPTAKEL 155
>Y1A7_ORYSA (Q9FRA7) Hypothetical protein P0001A07.13| Length = 253 Score = 106 bits (264), Expect = 5e-23 Identities = 68/167 (40%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Frame = +1 Query: 79 APTSFQKPPRSFDSRAMADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPL 258 AP S +P + AE RLR L F YA A+ +GPL Sbjct: 8 APIS-NRPEEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPL 66 Query: 259 RPGVDAVESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQAC 426 RPGVD VE V+ V G RFHGVP D+L F+DRKV +VQEL+R +PP VK A Sbjct: 67 RPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEA----- 121 Query: 427 HAVHAVPELAREIASEARRSGV----KGAAKDVYGMVEPVAKDLYVR 555 P LAR A+E R++G+ G AK EP A+DLY R Sbjct: 122 ------PGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTR 162
>SRPP_HEVBR (O82803) Small rubber particle protein (SRPP) (22 kDa rubber| particle protein) (22 kDa RPP) (Latex allergen Hev b 3) (27 kDa natural rubber allergen) Length = 204 Score = 89.4 bits (220), Expect = 6e-18 Identities = 46/138 (33%), Positives = 72/138 (52%) Frame = +1 Query: 139 SQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAGRFHG 318 +++ E RL+ L F LY A+D SGPL+PGVD +E+ V+ V + Sbjct: 2 AEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY 61 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASEARRSGVKG 498 +P + + FVD+ VD +V L+ +PP +K SAQ P + ++AS +GV+ Sbjct: 62 IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQE 121 Query: 499 AAKDVYGMVEPVAKDLYV 552 AK +Y +EP A+ V Sbjct: 122 GAKALYANLEPKAEQYAV 139
>REF_HEVBR (P15252) Rubber elongation factor protein (REF) (Allergen Hev b 1)| Length = 137 Score = 85.1 bits (209), Expect = 1e-16 Identities = 52/133 (39%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Frame = +1 Query: 133 DSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVA--- 303 + +QQ + L+ LGF +Y A+D SGPL+PGVD +E V+ VA Sbjct: 4 EDNQQGQGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPL 63 Query: 304 -GRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASEAR 480 RF +P L FVD V +V ++R LPP VK AS Q A+ A PE AR +AS + Sbjct: 64 YNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLAS-SL 122 Query: 481 RSGVKGAAKDVYG 519 K AK YG Sbjct: 123 PGQTKILAKVFYG 135
>SRP_PHAVU (Q41112) Stress-related protein (PvSRP)| Length = 167 Score = 80.9 bits (198), Expect = 2e-15 Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Frame = +1 Query: 223 LYALARDHSGPLRPGVDAVESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHL 390 LY+ A++ +GPL+PGV+ VE AV+ V RFH VP ++L + DRKV EL+RH+ Sbjct: 6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVG----ELDRHV 61 Query: 391 PPAVKSASAQACHAVHAVPELAREIASEARRSGVKGAAKDVYGMVEPVAKDLYV 552 P VK S+Q AR + SE RR GV AK VY EP A+ V Sbjct: 62 PSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAV 104
>Y2778_ARATH (O82246) Protein At2g47780| Length = 235 Score = 76.6 bits (187), Expect = 4e-14 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Frame = +1 Query: 100 PPRSFDSRAMADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAV 279 PP S S ++ + + +L+ L F LY LA+D++GPL+ GV+ + Sbjct: 22 PPSSSSSPSLV--VEDDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENI 79 Query: 280 ESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVP 447 E VR V +FH VPF +L FVDRKVD ++ ++P VK AS+QA Sbjct: 80 EDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL------- 132 Query: 448 ELAREIASEARRSGV----KGAAKDVYGMVEPVAK 540 +A+E +R+GV K A+ V EP A+ Sbjct: 133 ----TVATEVQRTGVVDTTKSIARSVRDKYEPAAE 163
>Y1736_ARATH (Q9FYF7) Protein At1g67360| Length = 240 Score = 63.2 bits (152), Expect = 5e-10 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Frame = +1 Query: 127 MADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG 306 M + ++ L+ L F LY A+ +SGPL+ V+ VE AV V Sbjct: 1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60 Query: 307 ----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASE 474 +F VP +L F+D KV + + H PP K QA ++ E A+ E Sbjct: 61 PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120 Query: 475 ARRSGVKGA 501 AR G K A Sbjct: 121 ARTGGPKAA 129
>DMD_CAEEL (Q9TW65) Dystrophin-1| Length = 3674 Score = 33.9 bits (76), Expect = 0.32 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%) Frame = +1 Query: 229 ALARDHSGPLRPGVDAVESAVRGVAGRFHGVPFDVLAFVDRK-VDGTVQELNR------- 384 A +RD +D++E R V R +G+ V+ R+ V+G ++++ R Sbjct: 2279 ATSRDTCDTFWADIDSLEQLARDVVRRANGIRMAVIYTPSRENVEGVLRDVQRLKMSIGD 2338 Query: 385 --------HLPPAVKSASAQACHAVHAVPELAREIA 468 +LPPA+K A A V + E A IA Sbjct: 2339 VKKRVQTANLPPAIKLAGKNAKRVVQVLTETATTIA 2374
>HIS4_WOLSU (Q7M9W9) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 240 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +1 Query: 298 VAGRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELA--REIAS 471 +A F VP D + D DGT++ +NR A+ AS H A LA EI Sbjct: 149 LAALFREVPLDAIICTDISKDGTLEGINREFTQAIAEASG---HYTIASGGLASEEEIPL 205 Query: 472 EARRSGVKG 498 A+ GV G Sbjct: 206 LAQAKGVDG 214
>CYPK_STRCM (P41178) Granaticin polyketide synthase bifunctional| cyclase/dehydratase (ORF4) Length = 304 Score = 30.8 bits (68), Expect = 2.7 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = +1 Query: 334 LAFVDRKVDGTVQELNRHLPPAVKSASAQACHAVHAVPELAREIASEARRSGVKGAAKDV 513 L ++DR VD T RHL A + ++ HA RE+ S + GAAKDV Sbjct: 122 LQWIDRAVDTT-----RHLELAALATTSNHAHAAEE-----RELLSFTDTCTIDGAAKDV 171 Query: 514 YGMV 525 + V Sbjct: 172 FDFV 175
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 4.6 Identities = 24/92 (26%), Positives = 28/92 (30%), Gaps = 3/92 (3%) Frame = -3 Query: 482 RXXXXXXXXXXSGXXXXXXXXXXXXXXXAGGRCRFSSCTVPSTFRSTKARTSKGTPWKRP 303 R SG G T P+ RST S+ +PW R Sbjct: 158 RRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPPSRASPWPRY 217 Query: 302 ATPLTADSTAS---TPGRSGPEWSLASA*SPA 216 TAS T R+G WS S S A Sbjct: 218 GRRWRTAGTASRTTTRTRTGRSWSTGSIVSAA 249
>CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| Length = 443 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 229 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 267
>CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Fragment) Length = 441 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 226 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 264
>RAD18_SCHPO (O74747) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) (RAD18 homolog) Length = 387 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 347 STKARTSKGTPWKRPATPLTADSTASTPGRSGPE 246 ST+ TS G P + PLT D T S G GP+ Sbjct: 353 STEPSTSNGFPATSVSPPLTIDLTNSQTGSDGPQ 386
>CLAP2_BRARE (Q6NYW6) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1288 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +1 Query: 403 KSASAQACHAVHAVPELAREIASEARRSGVKGAAK 507 + +SAQA V VP+ E AS +RR GAAK Sbjct: 21 RPSSAQAAFKVPKVPKKPAESASSSRRPSATGAAK 55
>PHTF1_HUMAN (Q9UMS5) Putative homeodomain transcription factor 1| Length = 762 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +1 Query: 376 LNRHLPPAVKSASAQACHAVH-----AVPELAREIASEARRSGVKGAAKDV 513 L+RHL VK + + CH V A E S+ RSGV G ++ + Sbjct: 312 LSRHLNSQVKKTTTRWCHIVRDSDSLAESEFESAAFSQGSRSGVSGGSRSL 362
>TRPF_HALMA (Q5V212) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)| (PRAI) Length = 214 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 271 DAVESAVRGVAGRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKS 408 DAV +A G HGVP D VD +GT + + +PP V S Sbjct: 16 DAVVTAGADAVGIIHGVPVDTPREVD---EGTAETIADGVPPFVTS 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,519,509 Number of Sequences: 219361 Number of extensions: 912358 Number of successful extensions: 4010 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3993 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
